prot_M-pyrifera_M_contig71624.17075.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig71624.17075.1
Unique Name	prot_M-pyrifera_M_contig71624.17075.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	210

Homology

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A1Y5HYX4_OSTTA (RRM domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5HYX4_OSTTA)

HSP 1 Score: 115 bits (287), Expect = 5.490e-28
Identity = 58/114 (50.88%), Postives = 73/114 (64.04%), Query Frame = 0

Query:   63 GGSGEGEK-----KGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 171
            GGSG G +     K + R A G  WED  L+EWPEND+RIF+G+L  E T E L   F++YPSFA A+ V  K  PG+N+G+GFVSFL   D   A+ E   K IG RPVK+K+
Sbjct:   94 GGSGVGARFKPIGKSLARAAGGERWEDSSLAEWPENDYRIFVGDLGNECTDEMLARAFAKYPSFAKAKVVMDKQNPGKNKGYGFVSFLDVVDYSTAMKEMNGKFIGNRPVKLKK 207

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: UPI001CB9276B (RNA-binding protein 42 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9276B)

HSP 1 Score: 114 bits (285), Expect = 6.920e-28
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKRVK 173
            E +KK V R AAG  WED  L+EWPENDFRIF G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++ K
Sbjct:   91 ETKKKSVPRKAAGQAWEDPTLAEWPENDFRIFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFANPTDLASALKEMNGKYVGNRPIKLRKSK 196

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A2I0WP77_9ASPA (Polyadenylate-binding protein RBP47 n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WP77_9ASPA)

HSP 1 Score: 114 bits (285), Expect = 1.270e-27
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 171
            E +KK + R AAG  WED  L++WPENDFR+F G+L  EV  + L++ FSR+PSFAMAR V  K   G+ RGFGFVSF  P+D+  A+ E   K++G RP+K+++
Sbjct:  117 ETKKKSIPRKAAGQTWEDPTLADWPENDFRLFCGDLGNEVNDDVLSKAFSRFPSFAMARVVRDK-RTGKTRGFGFVSFTNPSDLAAALKEMNGKYVGNRPIKLRK 220

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A5A7Q7E2_STRAF (RNA-binding protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q7E2_STRAF)

HSP 1 Score: 113 bits (283), Expect = 2.100e-27
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 171
            E +KK + RTAAG  WED  L+EWPEND+R+F G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD + A+ E   K++G RP+K+++
Sbjct:  109 ETKKKAIPRTAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFSNPTDCVAAIKEMNGKYVGNRPIKLRK 212

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: UPI0011D20DC9 (RNA-binding protein 42 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D20DC9)

HSP 1 Score: 112 bits (280), Expect = 2.710e-27
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 171
            E +KK + R AAG  WED  LSEWPEND+R+F G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++
Sbjct:   77 EAKKKAIPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRK 180

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: B9I5N8_POPTR (RRM domain-containing protein n=6 Tax=Saliceae TaxID=238069 RepID=B9I5N8_POPTR)

HSP 1 Score: 113 bits (282), Expect = 2.880e-27
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 171
            E +KK V R AAGL WED  L+EWPEND+R+F G+L  EV  + L++ FSR+PSF +AR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++
Sbjct:  108 ETKKKAVPRKAAGLTWEDPTLAEWPENDYRVFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRS-GKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRK 211

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A2J6JPV6_LACSA (RRM domain-containing protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6JPV6_LACSA)

HSP 1 Score: 113 bits (282), Expect = 4.130e-27
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKRVK 173
            E +KK + R AAG  WED  L+EWPENDFR+F G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++ K
Sbjct:  124 ETKKKAIPRKAAGQAWEDPTLAEWPENDFRLFCGDLGNEVNDDVLSKTFSRFPSFNMARVVRDK-RTGKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRKSK 229

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A803N5Q2_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803N5Q2_CHEQI)

HSP 1 Score: 110 bits (276), Expect = 4.330e-27
Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKRV--KEEVGMYKGDGEQKQIAKLRKVVDKS 198
            E +KK V R AAG  WED  L+EWPEND+R+F G+L  EV  + L++ FSR+PSF MA+ V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++   KE +     + ++ Q  K  K+  KS
Sbjct:   42 ETKKKAVPRRAAGQAWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDK-RTGKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRKSNWKERIDQEALERQKHQSYKKPKLAKKS 174

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A1J6HXQ5_NICAT (Oligouridylate-binding protein 1a n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1J6HXQ5_NICAT)

HSP 1 Score: 112 bits (279), Expect = 6.340e-27
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKRVK 173
            E +KK V R AAG  WED  L++WPEND+RIF GNL  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  P+D++ A+ E   K++G RPV++++ K
Sbjct:   98 EAKKKAVPRKAAGQTWEDPTLADWPENDYRIFCGNLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFSNPSDLVTALKETNGKYVGNRPVQLRKSK 203

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BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A5N6PYM5_9ASTR (RRM domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PYM5_9ASTR)

HSP 1 Score: 113 bits (282), Expect = 6.730e-27
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 0

Query:   67 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 171
            E +KK + R AAG  WED  L+EWPENDFR+F G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++
Sbjct:  102 ETKKKAIPRKAAGQAWEDPTLAEWPENDFRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFANPTDLASAIKEMNGKYVGNRPIKLRK 205

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1Y5HYX4_OSTTA	5.490e-28	50.88	RRM domain-containing protein n=2 Tax=Ostreococcus...	[more]
UPI001CB9276B	6.920e-28	52.34	RNA-binding protein 42 n=1 Tax=Erigeron canadensis...	[more]
A0A2I0WP77_9ASPA	1.270e-27	51.43	Polyadenylate-binding protein RBP47 n=3 Tax=Epiden...	[more]
A0A5A7Q7E2_STRAF	2.100e-27	50.48	RNA-binding protein n=1 Tax=Striga asiatica TaxID=...	[more]
UPI0011D20DC9	2.710e-27	50.48	RNA-binding protein 42 n=1 Tax=Syzygium oleosum Ta...	[more]
B9I5N8_POPTR	2.880e-27	50.48	RRM domain-containing protein n=6 Tax=Saliceae Tax...	[more]
A0A2J6JPV6_LACSA	4.130e-27	50.47	RRM domain-containing protein n=3 Tax=Lactuca TaxI...	[more]
A0A803N5Q2_CHEQI	4.330e-27	44.03	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
A0A1J6HXQ5_NICAT	6.340e-27	50.47	Oligouridylate-binding protein 1a n=4 Tax=Nicotian...	[more]
A0A5N6PYM5_9ASTR	6.730e-27	50.48	RRM domain-containing protein n=1 Tax=Mikania micr...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..170 e-value: 7.7E-13 score: 58.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 97..167 e-value: 3.1E-12 score: 46.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 95..174 score: 14.471
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 64..188 e-value: 2.3E-16 score: 61.9
None	No IPR available	PANTHER	PTHR47640	FAMILY NOT NAMED	coord: 66..192
None	No IPR available	PANTHER	PTHR47640:SF11		coord: 66..192
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 80..176

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig71624	contig	M-pyrifera_M_contig71624:155..784 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig71624.17075.1	mRNA_M-pyrifera_M_contig71624.17075.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig71624 155..784 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig71624.17075.1 ID=prot_M-pyrifera_M_contig71624.17075.1|Name=mRNA_M-pyrifera_M_contig71624.17075.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
VGGIGPAPPPPVRAVVAPTPGMLMMGKMSHMPAVGVGLKRGRDAGMMKMT
NVGSTEGRKSGTGGSGEGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLG
NLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDM
LRAVDEWQMKHIGLRPVKIKRVKEEVGMYKGDGEQKQIAKLRKVVDKSDP
AAKHKKKVE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf