mRNA_M-pyrifera_M_contig71624.17075.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71624.17075.1
Unique NamemRNA_M-pyrifera_M_contig71624.17075.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A1Y5HYX4_OSTTA (RRM domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5HYX4_OSTTA)

HSP 1 Score: 115 bits (287), Expect = 5.490e-28
Identity = 58/114 (50.88%), Postives = 73/114 (64.04%), Query Frame = 1
Query:  187 GGSGEGEK-----KGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 513
            GGSG G +     K + R A G  WED  L+EWPEND+RIF+G+L  E T E L   F++YPSFA A+ V  K  PG+N+G+GFVSFL   D   A+ E   K IG RPVK+K+
Sbjct:   94 GGSGVGARFKPIGKSLARAAGGERWEDSSLAEWPENDYRIFVGDLGNECTDEMLARAFAKYPSFAKAKVVMDKQNPGKNKGYGFVSFLDVVDYSTAMKEMNGKFIGNRPVKLKK 207          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: UPI001CB9276B (RNA-binding protein 42 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9276B)

HSP 1 Score: 114 bits (285), Expect = 6.920e-28
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKRVK 519
            E +KK V R AAG  WED  L+EWPENDFRIF G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++ K
Sbjct:   91 ETKKKSVPRKAAGQAWEDPTLAEWPENDFRIFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFANPTDLASALKEMNGKYVGNRPIKLRKSK 196          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A2I0WP77_9ASPA (Polyadenylate-binding protein RBP47 n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WP77_9ASPA)

HSP 1 Score: 114 bits (285), Expect = 1.270e-27
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 513
            E +KK + R AAG  WED  L++WPENDFR+F G+L  EV  + L++ FSR+PSFAMAR V  K   G+ RGFGFVSF  P+D+  A+ E   K++G RP+K+++
Sbjct:  117 ETKKKSIPRKAAGQTWEDPTLADWPENDFRLFCGDLGNEVNDDVLSKAFSRFPSFAMARVVRDK-RTGKTRGFGFVSFTNPSDLAAALKEMNGKYVGNRPIKLRK 220          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A5A7Q7E2_STRAF (RNA-binding protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q7E2_STRAF)

HSP 1 Score: 113 bits (283), Expect = 2.100e-27
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 513
            E +KK + RTAAG  WED  L+EWPEND+R+F G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD + A+ E   K++G RP+K+++
Sbjct:  109 ETKKKAIPRTAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFSNPTDCVAAIKEMNGKYVGNRPIKLRK 212          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: UPI0011D20DC9 (RNA-binding protein 42 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D20DC9)

HSP 1 Score: 112 bits (280), Expect = 2.710e-27
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 513
            E +KK + R AAG  WED  LSEWPEND+R+F G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++
Sbjct:   77 EAKKKAIPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRK 180          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: B9I5N8_POPTR (RRM domain-containing protein n=6 Tax=Saliceae TaxID=238069 RepID=B9I5N8_POPTR)

HSP 1 Score: 113 bits (282), Expect = 2.880e-27
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 513
            E +KK V R AAGL WED  L+EWPEND+R+F G+L  EV  + L++ FSR+PSF +AR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++
Sbjct:  108 ETKKKAVPRKAAGLTWEDPTLAEWPENDYRVFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRS-GKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRK 211          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A2J6JPV6_LACSA (RRM domain-containing protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6JPV6_LACSA)

HSP 1 Score: 113 bits (282), Expect = 4.130e-27
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKRVK 519
            E +KK + R AAG  WED  L+EWPENDFR+F G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++ K
Sbjct:  124 ETKKKAIPRKAAGQAWEDPTLAEWPENDFRLFCGDLGNEVNDDVLSKTFSRFPSFNMARVVRDK-RTGKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRKSK 229          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A803N5Q2_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803N5Q2_CHEQI)

HSP 1 Score: 110 bits (276), Expect = 4.330e-27
Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKRV--KEEVGMYKGDGEQKQIAKLRKVVDKS 594
            E +KK V R AAG  WED  L+EWPEND+R+F G+L  EV  + L++ FSR+PSF MA+ V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++   KE +     + ++ Q  K  K+  KS
Sbjct:   42 ETKKKAVPRRAAGQAWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDK-RTGKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRKSNWKERIDQEALERQKHQSYKKPKLAKKS 174          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A1J6HXQ5_NICAT (Oligouridylate-binding protein 1a n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1J6HXQ5_NICAT)

HSP 1 Score: 112 bits (279), Expect = 6.340e-27
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKRVK 519
            E +KK V R AAG  WED  L++WPEND+RIF GNL  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  P+D++ A+ E   K++G RPV++++ K
Sbjct:   98 EAKKKAVPRKAAGQTWEDPTLADWPENDYRIFCGNLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFSNPSDLVTALKETNGKYVGNRPVQLRKSK 203          
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Match: A0A5N6PYM5_9ASTR (RRM domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PYM5_9ASTR)

HSP 1 Score: 113 bits (282), Expect = 6.730e-27
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  199 EGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLGNLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDMLRAVDEWQMKHIGLRPVKIKR 513
            E +KK + R AAG  WED  L+EWPENDFR+F G+L  EV  + L++ FSR+PSF MAR V  K   G+ +G+GFVSF  PTD+  A+ E   K++G RP+K+++
Sbjct:  102 ETKKKAIPRKAAGQAWEDPTLAEWPENDFRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK-RTGKTKGYGFVSFANPTDLASAIKEMNGKYVGNRPIKLRK 205          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71624.17075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y5HYX4_OSTTA5.490e-2850.88RRM domain-containing protein n=2 Tax=Ostreococcus... [more]
UPI001CB9276B6.920e-2852.34RNA-binding protein 42 n=1 Tax=Erigeron canadensis... [more]
A0A2I0WP77_9ASPA1.270e-2751.43Polyadenylate-binding protein RBP47 n=3 Tax=Epiden... [more]
A0A5A7Q7E2_STRAF2.100e-2750.48RNA-binding protein n=1 Tax=Striga asiatica TaxID=... [more]
UPI0011D20DC92.710e-2750.48RNA-binding protein 42 n=1 Tax=Syzygium oleosum Ta... [more]
B9I5N8_POPTR2.880e-2750.48RRM domain-containing protein n=6 Tax=Saliceae Tax... [more]
A0A2J6JPV6_LACSA4.130e-2750.47RRM domain-containing protein n=3 Tax=Lactuca TaxI... [more]
A0A803N5Q2_CHEQI4.330e-2744.03RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A0A1J6HXQ5_NICAT6.340e-2750.47Oligouridylate-binding protein 1a n=4 Tax=Nicotian... [more]
A0A5N6PYM5_9ASTR6.730e-2750.48RRM domain-containing protein n=1 Tax=Mikania micr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71624contigM-pyrifera_M_contig71624:155..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score115.2
Seed ortholog evalue3.8e-23
Seed eggNOG ortholog70448.A0A090N2U9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA recognition motif
EggNOG OGs34I7E@3041,37Q3K@33090,KOG0226@1,KOG0226@2759
COG Functional cat.A
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size630
Cds size630
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.6516762-CDS-M-pyrifera_M_contig71624:154..7841622816611.6516762-CDS-M-pyrifera_M_contig71624:154..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71624 155..784 +
1692278076.8028889-CDS-M-pyrifera_M_contig71624:154..7841692278076.8028889-CDS-M-pyrifera_M_contig71624:154..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71624 155..784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71624.17075.1prot_M-pyrifera_M_contig71624.17075.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71624 155..784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71624.17075.1

>prot_M-pyrifera_M_contig71624.17075.1 ID=prot_M-pyrifera_M_contig71624.17075.1|Name=mRNA_M-pyrifera_M_contig71624.17075.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
VGGIGPAPPPPVRAVVAPTPGMLMMGKMSHMPAVGVGLKRGRDAGMMKMT
NVGSTEGRKSGTGGSGEGEKKGVLRTAAGLVWEDKKLSEWPENDFRIFLG
NLSPEVTTEQLTEIFSRYPSFAMARAVPSKTEPGRNRGFGFVSFLAPTDM
LRAVDEWQMKHIGLRPVKIKRVKEEVGMYKGDGEQKQIAKLRKVVDKSDP
AAKHKKKVE*
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mRNA from alignment at M-pyrifera_M_contig71624:155..784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71624.17075.1 ID=mRNA_M-pyrifera_M_contig71624.17075.1|Name=mRNA_M-pyrifera_M_contig71624.17075.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig71624:155..784+ (Macrocystis pyrifera P11B4 male)
GTTGGGGGAATTGGACCAGCTCCTCCACCTCCAGTGCGTGCTGTAGTGGC CCCGACCCCAGGTATGCTGATGATGGGAAAGATGAGTCACATGCCAGCAG TTGGGGTGGGGTTGAAGCGGGGAAGAGATGCAGGAATGATGAAAATGACC AACGTCGGGAGTACTGAGGGGAGGAAGAGTGGAACAGGTGGAAGTGGTGA GGGAGAGAAGAAAGGAGTATTGCGTACTGCTGCAGGGTTGGTGTGGGAGG ATAAAAAGTTGTCGGAATGGCCAGAAAATGATTTTCGCATTTTTCTCGGA AATCTCAGTCCAGAGGTCACAACGGAACAGCTCACTGAAATCTTCTCTCG TTATCCATCATTTGCAATGGCAAGGGCTGTTCCAAGTAAAACAGAGCCAG GTAGAAATCGTGGATTTGGGTTCGTGTCCTTTCTAGCACCCACTGACATG CTTCGGGCAGTGGATGAGTGGCAGATGAAGCACATTGGGCTCCGACCTGT GAAGATTAAGCGCGTCAAAGAGGAAGTTGGCATGTACAAAGGGGATGGGG AGCAGAAACAAATTGCAAAGCTCCGAAAAGTGGTTGACAAGTCAGATCCA GCAGCAAAGCATAAGAAAAAAGTGGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71624:155..784+

>mRNA_M-pyrifera_M_contig71624.17075.1 ID=mRNA_M-pyrifera_M_contig71624.17075.1|Name=mRNA_M-pyrifera_M_contig71624.17075.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig71624:155..784+ (Macrocystis pyrifera P11B4 male)
GTTGGGGGAATTGGACCAGCTCCTCCACCTCCAGTGCGTGCTGTAGTGGC
CCCGACCCCAGGTATGCTGATGATGGGAAAGATGAGTCACATGCCAGCAG
TTGGGGTGGGGTTGAAGCGGGGAAGAGATGCAGGAATGATGAAAATGACC
AACGTCGGGAGTACTGAGGGGAGGAAGAGTGGAACAGGTGGAAGTGGTGA
GGGAGAGAAGAAAGGAGTATTGCGTACTGCTGCAGGGTTGGTGTGGGAGG
ATAAAAAGTTGTCGGAATGGCCAGAAAATGATTTTCGCATTTTTCTCGGA
AATCTCAGTCCAGAGGTCACAACGGAACAGCTCACTGAAATCTTCTCTCG
TTATCCATCATTTGCAATGGCAAGGGCTGTTCCAAGTAAAACAGAGCCAG
GTAGAAATCGTGGATTTGGGTTCGTGTCCTTTCTAGCACCCACTGACATG
CTTCGGGCAGTGGATGAGTGGCAGATGAAGCACATTGGGCTCCGACCTGT
GAAGATTAAGCGCGTCAAAGAGGAAGTTGGCATGTACAAAGGGGATGGGG
AGCAGAAACAAATTGCAAAGCTCCGAAAAGTGGTTGACAAGTCAGATCCA
GCAGCAAAGCATAAGAAAAAAGTGGAGTAAGTTGGGGGAATTGGACCAGC
TCCTCCACCTCCAGTGCGTGCTGTAGTGGCCCCGACCCCAGGTATGCTGA
TGATGGGAAAGATGAGTCACATGCCAGCAGTTGGGGTGGGGTTGAAGCGG
GGAAGAGATGCAGGAATGATGAAAATGACCAACGTCGGGAGTACTGAGGG
GAGGAAGAGTGGAACAGGTGGAAGTGGTGAGGGAGAGAAGAAAGGAGTAT
TGCGTACTGCTGCAGGGTTGGTGTGGGAGGATAAAAAGTTGTCGGAATGG
CCAGAAAATGATTTTCGCATTTTTCTCGGAAATCTCAGTCCAGAGGTCAC
AACGGAACAGCTCACTGAAATCTTCTCTCGTTATCCATCATTTGCAATGG
CAAGGGCTGTTCCAAGTAAAACAGAGCCAGGTAGAAATCGTGGATTTGGG
TTCGTGTCCTTTCTAGCACCCACTGACATGCTTCGGGCAGTGGATGAGTG
GCAGATGAAGCACATTGGGCTCCGACCTGTGAAGATTAAGCGCGTCAAAG
AGGAAGTTGGCATGTACAAAGGGGATGGGGAGCAGAAACAAATTGCAAAG
CTCCGAAAAGTGGTTGACAAGTCAGATCCAGCAGCAAAGCATAAGAAAAA
AGTGGAGTAA
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