mRNA_M-pyrifera_M_contig71449.17035.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71449.17035.1
Unique NamemRNA_M-pyrifera_M_contig71449.17035.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: A0A0D2ND78_9CHLO (RING-type domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2ND78_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 2.080e-12
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:  178 CPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQLEDDAPALIYGDGRGTFV 357
            CPIC+ AP  P+ L  C H+FCEDC+AEW+ER   CP CR  ++   P L +GDG  T +
Sbjct:  326 CPICRDAPTAPIRL-DCSHVFCEDCLAEWLEREPTCPMCRCNVKP--PGLNFGDGSTTLL 382          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: D8M8E8_BLAHO (RING-type domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M8E8_BLAHO)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-11
Identity = 36/102 (35.29%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   67 RLFLVLHSCFFPALSWRRRLSPEDLLSRAQSNETDPICPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQLEDDAPALIYGDGRGTFVLTVAW 372
            +LF ++ S F   L + +R+S ++ +      E +  CPIC      P  L PCDH+FCE CIA+W+E +  CP CR++L       I+G+G  + V    W
Sbjct:  140 KLFKMIISLFTSNLMYGKRISVQEAMQ-----EGNACCPICMETVKYPTKL-PCDHVFCETCIAQWLETNQTCPVCRSKLNRSGD-WIHGNGSRSNVFLFIW 234          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: A0A2J7ZW35_9CHLO (RING finger and transmembrane domain-containing protein 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZW35_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 2.070e-11
Identity = 44/102 (43.14%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    1 FRMAFAWSYLGLKAAALLLLLRRLFLVLHSCFFPALSWRRRLSPEDLLSRAQSNETDPI--CPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRA 300
            F   FA  YL LKA+A+L  LR L+L L +      + RR       + R +++ET     CP+CQ     PV L  C HIFCE+CI EW+ER   CP CRA
Sbjct:  330 FASTFAGFYLTLKASAVLSRLRLLWLALRT------ATRRGALYGTYMRRDEASETGTFGACPVCQDPVTTPVRL-DCGHIFCEECILEWLERDRTCPLCRA 424          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: A0A0D2L643_9CHLO (RING-type domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2L643_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 2.730e-11
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query:  172 PICPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQLEDDAPALIYGDGRGTFV 357
            P+CPICQ     P+ L  C H+FCEDC+AEW+ER   CP CR  ++   P    GDG  T +
Sbjct:  353 PVCPICQDPCAAPIRL-DCSHVFCEDCLAEWLEREPTCPMCRCNVKP--PGFTLGDGSTTLL 411          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: UPI001F03EAF1 (E3 ubiquitin-protein ligase RNFT1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03EAF1)

HSP 1 Score: 67.8 bits (164), Expect = 9.590e-11
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:  145 SRAQSNETDPICPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQL 306
            S+ Q N+    CPICQ    RP++LR C HIFCEDCI+ W +R   CP CRA++
Sbjct:  351 SKEQINKLGNTCPICQEEFCRPISLRGCRHIFCEDCISLWFDREQTCPLCRAKV 404          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: A0A3M7A401_HORWE (RING-type domain-containing protein n=8 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7A401_HORWE)

HSP 1 Score: 65.1 bits (157), Expect = 5.710e-10
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:  127 SPEDLLSRAQSNETDPICPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQL 306
            +PEDL    + N     CPIC      P    PC HI+C +C+  W+ER+ NCPTCRA+L
Sbjct:   34 TPEDLSRLTEGNPDSDSCPICYQTFTEPTKT-PCGHIYCRECLEAWLERTNNCPTCRARL 92          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: A0A7S2S9Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9Z2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.240e-10
Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 1
Query:   13 FAWSYLGLKAAALLLLLRRLFLVLHSCFFPALSWRRRLSPEDLLSRAQSNETDPICPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQLEDDAPALIYGDGRG 348
            F   YL LKA      L+ LFL++ +     L   R  S +++   A++   D  CPIC    + PV L PC H+FCE+C+ EW+ER   CP CRA   D   + +    RG
Sbjct:  311 FLGVYLCLKAMVASSYLKVLFLMVKASLTTDLEIGRLASSQEV---AEAGHPD--CPICYDEMVSPVLL-PCGHLFCEECVLEWLEREKTCPLCRA---DTPTSPLLASSRG 413          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: UPI001263A689 (RING finger and transmembrane domain-containing protein 2-like n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001263A689)

HSP 1 Score: 64.3 bits (155), Expect = 1.600e-9
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1
Query:  154 QSNETDPICPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQLEDDAPALIYGDG 342
            Q N    +C ICQ     PV LR C HIFCEDC++EW+ER   CP CRA L   A    +GDG
Sbjct:  371 QVNAAGDLCAICQEKMHVPVLLR-CKHIFCEDCVSEWLERERTCPLCRA-LVKAADLRSFGDG 431          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: A0A482SDI8_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDI8_9ARCH)

HSP 1 Score: 62.8 bits (151), Expect = 2.990e-9
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  151 AQSNETDPI-----CPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQLEDDAPAL 327
            A+++E DP+     CPIC  +P + V L  C HIFCE C+ EW+E+   CP CR +++  A AL
Sbjct:  175 ARTSEYDPLTSTYDCPICFDSPKKAVVLN-CSHIFCEQCVYEWLEKEKTCPVCRQEVQSAAQAL 237          
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Match: A0A445B634_ARAHY (RING-type domain-containing protein n=5 Tax=Arachis TaxID=3817 RepID=A0A445B634_ARAHY)

HSP 1 Score: 63.5 bits (153), Expect = 3.040e-9
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:  145 SRAQSNETDPICPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQLEDDAPALIYGDG 342
            ++ Q      +C ICQ     P+ L  C H+FCE+C++EW+ER   CP CRA ++  A  L YGDG
Sbjct:  414 TKEQVKSAGDMCAICQEKMRAPLLLH-CKHLFCEECVSEWLERERTCPLCRANVKS-ADLLTYGDG 477          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71449.17035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2ND78_9CHLO2.080e-1250.00RING-type domain-containing protein n=1 Tax=Monora... [more]
D8M8E8_BLAHO1.280e-1135.29RING-type domain-containing protein n=1 Tax=Blasto... [more]
A0A2J7ZW35_9CHLO2.070e-1143.14RING finger and transmembrane domain-containing pr... [more]
A0A0D2L643_9CHLO2.730e-1146.77RING-type domain-containing protein n=1 Tax=Monora... [more]
UPI001F03EAF19.590e-1151.85E3 ubiquitin-protein ligase RNFT1-like n=1 Tax=Xen... [more]
A0A3M7A401_HORWE5.710e-1045.00RING-type domain-containing protein n=8 Tax=Hortae... [more]
A0A7S2S9Z2_9STRA6.240e-1036.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001263A6891.600e-950.79RING finger and transmembrane domain-containing pr... [more]
A0A482SDI8_9ARCH2.990e-943.75RING-type domain-containing protein n=1 Tax=archae... [more]
A0A445B634_ARAHY3.040e-942.42RING-type domain-containing protein n=5 Tax=Arachi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71449contigM-pyrifera_M_contig71449:768..1142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.6
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog4641.GSMUA_Achr8P01560_001
KEGG koko:K22379
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Ring finger and transmembrane domain-containing protein
EggNOG OGs37JYN@33090,3GEK6@35493,KOG4638@1,KOG4638@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size375
Cds size369
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.0308-CDS-M-pyrifera_M_contig71449:767..11361622816609.0308-CDS-M-pyrifera_M_contig71449:767..1136Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71449 768..1136 -
1692278075.214462-CDS-M-pyrifera_M_contig71449:767..11361692278075.214462-CDS-M-pyrifera_M_contig71449:767..1136Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71449 768..1136 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.0414202-UTR-M-pyrifera_M_contig71449:1136..11421622816609.0414202-UTR-M-pyrifera_M_contig71449:1136..1142Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71449 1137..1142 -
1692278075.2273126-UTR-M-pyrifera_M_contig71449:1136..11421692278075.2273126-UTR-M-pyrifera_M_contig71449:1136..1142Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71449 1137..1142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71449.17035.1prot_M-pyrifera_M_contig71449.17035.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71449 768..1136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71449.17035.1

>prot_M-pyrifera_M_contig71449.17035.1 ID=prot_M-pyrifera_M_contig71449.17035.1|Name=mRNA_M-pyrifera_M_contig71449.17035.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MAFAWSYLGLKAAALLLLLRRLFLVLHSCFFPALSWRRRLSPEDLLSRAQ
SNETDPICPICQSAPIRPVALRPCDHIFCEDCIAEWVERSGNCPTCRAQL
EDDAPALIYGDGRGTFVLTVAW*
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mRNA from alignment at M-pyrifera_M_contig71449:768..1142-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71449.17035.1 ID=mRNA_M-pyrifera_M_contig71449.17035.1|Name=mRNA_M-pyrifera_M_contig71449.17035.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig71449:768..1142- (Macrocystis pyrifera P11B4 male)
TTTCGAATGGCTTTTGCTTGGTCCTATTTGGGCCTCAAGGCTGCAGCGCT CCTGCTGTTGCTGCGCCGGCTCTTTTTGGTCCTCCACTCTTGCTTCTTCC CGGCTCTCTCCTGGCGACGCCGGCTCTCTCCGGAAGACCTCCTCTCCCGC GCCCAATCCAACGAAACAGACCCCATCTGCCCCATCTGCCAATCGGCGCC GATTCGACCCGTTGCCCTCCGGCCCTGTGACCACATCTTCTGCGAAGACT GCATCGCAGAGTGGGTCGAGCGATCCGGAAACTGCCCCACGTGCAGGGCG CAACTCGAGGATGACGCGCCCGCTCTCATTTATGGAGATGGAAGAGGCAC GTTTGTACTCACCGTTGCCTGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71449:768..1142-

>mRNA_M-pyrifera_M_contig71449.17035.1 ID=mRNA_M-pyrifera_M_contig71449.17035.1|Name=mRNA_M-pyrifera_M_contig71449.17035.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig71449:768..1142- (Macrocystis pyrifera P11B4 male)
ATGGCTTTTGCTTGGTCCTATTTGGGCCTCAAGGCTGCAGCGCTCCTGCT
GTTGCTGCGCCGGCTCTTTTTGGTCCTCCACTCTTGCTTCTTCCCGGCTC
TCTCCTGGCGACGCCGGCTCTCTCCGGAAGACCTCCTCTCCCGCGCCCAA
TCCAACGAAACAGACCCCATCTGCCCCATCTGCCAATCGGCGCCGATTCG
ACCCGTTGCCCTCCGGCCCTGTGACCACATCTTCTGCGAAGACTGCATCG
CAGAGTGGGTCGAGCGATCCGGAAACTGCCCCACGTGCAGGGCGCAACTC
GAGGATGACGCGCCCGCTCTCATTTATGGAGATGGAAGAGGCACGTTTGT
ACTCACCGTTGCCTGGTAGATGGCTTTTGCTTGGTCCTATTTGGGCCTCA
AGGCTGCAGCGCTCCTGCTGTTGCTGCGCCGGCTCTTTTTGGTCCTCCAC
TCTTGCTTCTTCCCGGCTCTCTCCTGGCGACGCCGGCTCTCTCCGGAAGA
CCTCCTCTCCCGCGCCCAATCCAACGAAACAGACCCCATCTGCCCCATCT
GCCAATCGGCGCCGATTCGACCCGTTGCCCTCCGGCCCTGTGACCACATC
TTCTGCGAAGACTGCATCGCAGAGTGGGTCGAGCGATCCGGAAACTGCCC
CACGTGCAGGGCGCAACTCGAGGATGACGCGCCCGCTCTCATTTATGGAG
ATGGAAGAGGCACGTTTGTACTCACCGTTGCCTGGTAG
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