mRNA_M-pyrifera_M_contig68584.16500.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68584.16500.1
Unique NamemRNA_M-pyrifera_M_contig68584.16500.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: A0A2P4XVZ1_9STRA (Magnesium transporter n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4XVZ1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.900e-11
Identity = 37/109 (33.94%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  142 ERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFFLLYSRN 468
            E AE+L+E+YL    +     + ++  +   E  + L+L + RN LL ++++ +L + +L++   + G+FGMNLASGVE +  WF GVA+S V+A + +    +L+ R 
Sbjct:  329 EEAEVLIETYLQDIFSTRTKADLMQHRITNTESLVMLKLDSMRNYLLRVDLVFSLVTISLSVGTLLAGVFGMNLASGVEEAWGWFWGVAISCVVAFVVITIVGILFFRQ 437          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: G4YYG1_PHYSP (Magnesium transporter n=4 Tax=Phytophthora TaxID=4783 RepID=G4YYG1_PHYSP)

HSP 1 Score: 69.7 bits (169), Expect = 6.490e-11
Identity = 37/109 (33.94%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  142 ERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFFLLYSRN 468
            E AE+L+E+YL    +     + ++  +   E  + L+L + RN LL ++++ +L + +L++   + G+FGMNLASGVE +  WF GVA++ V+A I +    +L+ R 
Sbjct:  321 EEAEVLIENYLQDIFSTRTQADLMQHRITNTESLVMLKLDSMRNYLLRVDLVFSLMTISLSVGTLLAGVFGMNLASGVEEAWGWFWGVAITCVVAFIVITAIGILFFRQ 429          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: A0A3R7K695_9STRA (Magnesium transporter n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K695_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.570e-11
Identity = 37/109 (33.94%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  142 ERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFFLLYSRN 468
            E AE+L+E+YL    +     E ++  +   E  + L+L + RN LL ++++ +L + +L++   + G+FGMNLASGVE +  WF GVA++ V+A I +    +L+ + 
Sbjct:  331 EEAEVLIENYLQDIFSTRTQAELMQHRITNTESLVMLKLDSMRNYLLRVDLVFSLMTISLSVGTLLAGVFGMNLASGVEEAWGWFWGVAITCVVAFIVITLAGILFFKQ 439          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: D0NXE8_PHYIT (Magnesium transporter n=17 Tax=Phytophthora TaxID=4783 RepID=D0NXE8_PHYIT)

HSP 1 Score: 68.9 bits (167), Expect = 1.200e-10
Identity = 36/109 (33.03%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  142 ERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFFLLYSRN 468
            E AE+L+E+YL    +     + ++  +   E  + L+L + RN LL ++++ +L + +L++   + G+FGMNLASGVE +  WF GVA++ V+  I +    +L+ R 
Sbjct:  315 EEAEVLIENYLQDIFSTRTKADLMQQRITNTESLVMLKLDSMRNYLLRVDLIFSLVTISLSVGTLLAGVFGMNLASGVEEAWGWFWGVAITCVVVFIVITAIGILFFRQ 423          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: H3GFC9_PHYRM (Magnesium transporter n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFC9_PHYRM)

HSP 1 Score: 68.2 bits (165), Expect = 2.280e-10
Identity = 34/109 (31.19%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  142 ERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFFLLYSRN 468
            E AE+L+E+YL    +     + ++  +   E  + L+L + RN LL ++++ +L + +L++   + G+FGMNLASGVE +  WF GVA++ V+A + +    +++ + 
Sbjct:  339 EEAEVLIENYLQDIFSTRTKADLMQHRITNTESLVMLKLDSMRNYLLRVDLVFSLVTISLSVGTLLAGVFGMNLASGVEDAWGWFWGVAITCVVAFVVITLMGVMFFKQ 447          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: A0A2G5BEV8_COERN (Magnesium transporter n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BEV8_COERN)

HSP 1 Score: 67.4 bits (163), Expect = 4.400e-10
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  115 AEHEINSAQERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFFLLYSRNSLE 477
            A H      E  E+++E+YL     +++  E++  +++  ED +N+ L + RNSLL LE+ LT+ + AL+    + G+FGMNL +  ES PN F  V+  ++ + IAL    L   R  L 
Sbjct:  399 ATHRETDDHEEVELMMETYLKQVEEIVNHIESVSSHVRTTEDVVNIILDSQRNSLLLLEIRLTILTVALSSGTFLSGLFGMNLINSFESHPNAFIAVSAIALFSIIALTVTGLRSMRKVLR 519          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: A0A250XNN5_9CHLO (Magnesium transporter n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XNN5_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 7.670e-10
Identity = 35/112 (31.25%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  127 INSAQERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFFLLYS 462
            + S     E+LLE+Y   +    +  + L   +K  ED +N++L   RN L+  +++LT  +  +A+I  I G+FGMNL SG++ SPN F  V +++ +  + L   F++++
Sbjct:  313 VESEVAEVEMLLETYFMHYDNTYNRLKTLNEYIKDTEDLVNIKLDQHRNQLITTDLILTALTCGMAIITTISGIFGMNLDSGLQVSPNVFNEVTIATCLGALILFVAFIIFA 424          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: A0A662WV23_9STRA (Magnesium transporter n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WV23_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.050e-9
Identity = 34/109 (31.19%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  142 ERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFFLLYSRN 468
            E AE+L+E+YL          + ++  +   E  + L+L + RN LL ++++ +L   +L++   I G+FGMNLASG+E +  WF GV +++V+A + +    +L+ + 
Sbjct:  322 EEAEVLIENYLQDIFTTRTKADLMQHRITNTESLVMLKLDSMRNYLLGVDLIFSLIVISLSVGTLIAGVFGMNLASGIEDAGGWFWGVVITTVVAFLVITTIGILFFKQ 430          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: A0A7S2ZZK0_9RHOD (Magnesium transporter n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZZK0_9RHOD)

HSP 1 Score: 65.5 bits (158), Expect = 1.760e-9
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  142 ERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFF-----FLLYSR 465
            E  E++ E+YL    ++L+   ++   +++ E+ + +RL AARN +L LEV L L + +LA  A   G+FGMNL SG E  P  F    VSS + G +++FF     +L Y R
Sbjct:  259 EDVEMMFETYLKQVDSILNEIRSIAKEVEVTENVIQIRLDAARNKILRLEVYLNLATMSLAAGALFAGLFGMNLTSGYEEHPYAF--YIVSSSLLGSSVLFFKGSMAYLRYKR 369          
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Match: A0A2T9YN22_9FUNG (Magnesium transporter n=1 Tax=Furculomyces boomerangus TaxID=61424 RepID=A0A2T9YN22_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 2.460e-9
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  136 AQERAEILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLLTLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFF 447
            + E  E+LLE+YL     + +  E++   LK  ED +N+ L + RNSL+ LE+ LT+ + AL +   I  +FGMNL SG E  P  F  + + ++   + L  F
Sbjct:   65 SHEEIELLLEAYLKQVEEIANQVESISSQLKTTEDVVNIILDSQRNSLMLLEIRLTVLAVALGVGTFITSLFGMNLFSGFEEHPVAFYSITLVTITLALTLAGF 168          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68584.16500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4XVZ1_9STRA1.900e-1133.94Magnesium transporter n=2 Tax=Phytophthora TaxID=4... [more]
G4YYG1_PHYSP6.490e-1133.94Magnesium transporter n=4 Tax=Phytophthora TaxID=4... [more]
A0A3R7K695_9STRA6.570e-1133.94Magnesium transporter n=3 Tax=Phytophthora kernovi... [more]
D0NXE8_PHYIT1.200e-1033.03Magnesium transporter n=17 Tax=Phytophthora TaxID=... [more]
H3GFC9_PHYRM2.280e-1031.19Magnesium transporter n=1 Tax=Phytophthora ramorum... [more]
A0A2G5BEV8_COERN4.400e-1033.88Magnesium transporter n=1 Tax=Coemansia reversa (s... [more]
A0A250XNN5_9CHLO7.670e-1031.25Magnesium transporter n=1 Tax=Chlamydomonas eustig... [more]
A0A662WV23_9STRA1.050e-931.19Magnesium transporter n=2 Tax=Nothophytophthora sp... [more]
A0A7S2ZZK0_9RHOD1.760e-937.17Magnesium transporter n=2 Tax=Rhodosorus marinus T... [more]
A0A2T9YN22_9FUNG2.460e-935.58Magnesium transporter n=1 Tax=Furculomyces boomera... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68584contigM-pyrifera_M_contig68584:713..1201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.6
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog3067.XP_002950686.1
KEGG koko:K16075
KEGG TC1.A.35.5
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1903830
EggNOG free text desc.Mg2 transporter protein
EggNOG OGs34P59@3041,37J41@33090,KOG2662@1,KOG2662@2759
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size489
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.9777944-CDS-M-pyrifera_M_contig68584:712..12011622816577.9777944-CDS-M-pyrifera_M_contig68584:712..1201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68584 713..1201 -
1692278057.4689558-CDS-M-pyrifera_M_contig68584:712..12011692278057.4689558-CDS-M-pyrifera_M_contig68584:712..1201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68584 713..1201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68584.16500.1prot_M-pyrifera_M_contig68584.16500.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68584 713..1201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68584.16500.1

>prot_M-pyrifera_M_contig68584.16500.1 ID=prot_M-pyrifera_M_contig68584.16500.1|Name=mRNA_M-pyrifera_M_contig68584.16500.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MGLLHRSMSMGSAEEERVGLPSGEEVCERLGLPRTPADAEHEINSAQERA
EILLESYLSSFGAVLHLGEALEGNLKMAEDQLNLRLAAARNSLLHLEVLL
TLTSTALALIAAIGGMFGMNLASGVESSPNWFTGVAVSSVIAGIALVFFF
LLYSRNSLEGAD*
back to top

mRNA from alignment at M-pyrifera_M_contig68584:713..1201-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68584.16500.1 ID=mRNA_M-pyrifera_M_contig68584.16500.1|Name=mRNA_M-pyrifera_M_contig68584.16500.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig68584:713..1201- (Macrocystis pyrifera P11B4 male)
ATGGGGTTGTTGCACAGATCCATGTCGATGGGAAGTGCGGAGGAGGAGAG GGTGGGACTGCCGAGTGGGGAGGAGGTGTGTGAGAGGCTGGGATTGCCCA GGACGCCAGCTGATGCGGAACATGAGATAAATTCCGCACAGGAGCGTGCG GAAATTCTCCTCGAATCCTACCTCTCCTCCTTCGGCGCAGTGCTCCATCT TGGAGAAGCTCTCGAAGGAAACCTCAAAATGGCTGAAGATCAACTCAATC TGCGTCTAGCAGCTGCAAGAAATTCTCTCCTCCACCTCGAAGTGCTTCTC ACCCTCACCTCCACCGCCCTCGCACTCATCGCCGCCATCGGAGGAATGTT CGGAATGAACCTCGCTTCTGGCGTCGAATCCAGCCCAAACTGGTTCACTG GAGTCGCAGTCTCATCCGTCATCGCTGGAATCGCCCTCGTCTTCTTCTTC CTCCTCTACTCCAGAAACTCACTCGAAGGTGCTGATTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68584:713..1201-

>mRNA_M-pyrifera_M_contig68584.16500.1 ID=mRNA_M-pyrifera_M_contig68584.16500.1|Name=mRNA_M-pyrifera_M_contig68584.16500.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig68584:713..1201- (Macrocystis pyrifera P11B4 male)
ATGGGGTTGTTGCACAGATCCATGTCGATGGGAAGTGCGGAGGAGGAGAG
GGTGGGACTGCCGAGTGGGGAGGAGGTGTGTGAGAGGCTGGGATTGCCCA
GGACGCCAGCTGATGCGGAACATGAGATAAATTCCGCACAGGAGCGTGCG
GAAATTCTCCTCGAATCCTACCTCTCCTCCTTCGGCGCAGTGCTCCATCT
TGGAGAAGCTCTCGAAGGAAACCTCAAAATGGCTGAAGATCAACTCAATC
TGCGTCTAGCAGCTGCAAGAAATTCTCTCCTCCACCTCGAAGTGCTTCTC
ACCCTCACCTCCACCGCCCTCGCACTCATCGCCGCCATCGGAGGAATGTT
CGGAATGAACCTCGCTTCTGGCGTCGAATCCAGCCCAAACTGGTTCACTG
GAGTCGCAGTCTCATCCGTCATCGCTGGAATCGCCCTCGTCTTCTTCTTC
CTCCTCTACTCCAGAAACTCACTCGAAGGTGCTGATTGAATGGGGTTGTT
GCACAGATCCATGTCGATGGGAAGTGCGGAGGAGGAGAGGGTGGGACTGC
CGAGTGGGGAGGAGGTGTGTGAGAGGCTGGGATTGCCCAGGACGCCAGCT
GATGCGGAACATGAGATAAATTCCGCACAGGAGCGTGCGGAAATTCTCCT
CGAATCCTACCTCTCCTCCTTCGGCGCAGTGCTCCATCTTGGAGAAGCTC
TCGAAGGAAACCTCAAAATGGCTGAAGATCAACTCAATCTGCGTCTAGCA
GCTGCAAGAAATTCTCTCCTCCACCTCGAAGTGCTTCTCACCCTCACCTC
CACCGCCCTCGCACTCATCGCCGCCATCGGAGGAATGTTCGGAATGAACC
TCGCTTCTGGCGTCGAATCCAGCCCAAACTGGTTCACTGGAGTCGCAGTC
TCATCCGTCATCGCTGGAATCGCCCTCGTCTTCTTCTTCCTCCTCTACTC
CAGAAACTCACTCGAAGGTGCTGATTGA
back to top