prot_M-pyrifera_M_contig65793.15978.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig65793.15978.1
Unique Nameprot_M-pyrifera_M_contig65793.15978.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length64
Homology
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A7X5WPS9_9ACTN (DNA replication and repair protein RecF (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WPS9_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 1.670e-24
Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = 0
Query:    3 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            +L+R+LEL++FRSYE+A +    GLTAI+GENGQGKTNLLEAIGWIAG+GSFRGVPDDAL+R
Sbjct:    1 MLLRSLELRDFRSYESADIEFGPGLTAIIGENGQGKTNLLEAIGWIAGLGSFRGVPDDALVR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A2E0T4N1_9ACTN (DNA replication and repair protein RecF (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T4N1_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 1.080e-19
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    5 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            IR+L L ++RSY +  ++  DGLTA+VGENG GKTNL+E+I W++G GSFRG PDDAL+R
Sbjct:    3 IRSLSLTDWRSYRSVEVSFGDGLTAVVGENGHGKTNLIESIAWMSGAGSFRGAPDDALVR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A2D8LWR9_9ACTN (DNA replication and repair protein RecF n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LWR9_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 4.630e-18
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 0
Query:    5 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            IR+L L ++RSY +  ++  DGLTAIVGENG GKTNL+E+I W++G+GSFRG PDDALIR
Sbjct:    3 IRSLSLTDWRSYRSVEVSFXDGLTAIVGENGHGKTNLIESIAWMSGVGSFRGAPDDALIR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A6B1AUV1_9ACTN (DNA replication and repair protein RecF n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AUV1_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 2.360e-17
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    5 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            I+TLEL +FR Y  A++    GLT IVGENGQGKT+LLEAI WIAG GSFRGV DD+LIR
Sbjct:    3 IQTLELLDFRIYTQAAVEFDPGLTVIVGENGQGKTSLLEAISWIAGRGSFRGVADDSLIR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A6I3FK88_9ACTN (AAA family ATPase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3FK88_9ACTN)

HSP 1 Score: 76.6 bits (187), Expect = 5.210e-17
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    5 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            +R L L +FRSY +A LT + GLTA++G NGQGKTN++EA+G++A + SFRG P+DAL+R
Sbjct:    3 LRQLWLTDFRSYPSAELTFAPGLTALLGANGQGKTNVMEAVGYLATLSSFRGAPNDALVR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A8F4FQ08_9ACTN (DNA replication and repair protein RecF n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FQ08_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 4.330e-16
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    5 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            +R L L +FR Y  A +T + GLTA+VG NGQGKTNLLEA+G++A +GSFRG P+DALIR
Sbjct:    3 LRRLWLTDFRGYHEADVTFAPGLTAVVGPNGQGKTNLLEAVGYLATLGSFRGAPNDALIR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A4P5RE52_9ACTN (DNA replication and repair protein RecF n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5RE52_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 6.350e-16
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0
Query:    3 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            ++I+ LEL NFR+Y A ++ L+ G+TA+VG NGQGKTNL+EA+G++A + SFRGVP +ALIR
Sbjct:    1 MIIQHLELTNFRNYAATTIDLTSGVTAVVGNNGQGKTNLVEALGYLATLKSFRGVPTEALIR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A7V9GFD8_9ACTN (DNA replication and repair protein RecF (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GFD8_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 6.450e-16
Identity = 36/62 (58.06%), Postives = 52/62 (83.87%), Query Frame = 0
Query:    3 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            +L+RT+ L +FRSY +A+LTL+ GLTA++G+NG+GK+NLLEA+ W A + SFRG P +AL+R
Sbjct:    1 MLVRTVWLTDFRSYPSATLTLAPGLTAVLGDNGRGKSNLLEAVAWPATLSSFRGAPTEALVR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A0R2QQJ5_9ACTN (DNA replication and repair protein RecF n=6 Tax=root TaxID=1 RepID=A0A0R2QQJ5_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.170e-15
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    3 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            ++I+ LEL +FR+Y +A +TL+DG+TA++G NGQGKTNL+EA+ ++A + SFRGVP +A+IR
Sbjct:    1 MIIQHLELTDFRNYASAQITLTDGVTAVIGNNGQGKTNLVEALSYLATLKSFRGVPTEAMIR 62          
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A7K0LDS9_9ACTN (DNA replication and repair protein RecF n=6 Tax=root TaxID=1 RepID=A0A7K0LDS9_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 4.360e-15
Identity = 36/62 (58.06%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    3 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 64
            ++I+ LEL NFR+Y +A+++L+ G+TAIVG NGQGKTNL EA+ ++A + SFRGVP++A+IR
Sbjct:    1 MIIQHLELTNFRNYASATISLTTGVTAIVGNNGQGKTNLTEALSFLATLKSFRGVPNEAMIR 62          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WPS9_9ACTN1.670e-2475.81DNA replication and repair protein RecF (Fragment)... [more]
A0A2E0T4N1_9ACTN1.080e-1961.67DNA replication and repair protein RecF (Fragment)... [more]
A0A2D8LWR9_9ACTN4.630e-1865.00DNA replication and repair protein RecF n=5 Tax=Ac... [more]
A0A6B1AUV1_9ACTN2.360e-1770.00DNA replication and repair protein RecF n=1 Tax=Ac... [more]
A0A6I3FK88_9ACTN5.210e-1758.33AAA family ATPase (Fragment) n=1 Tax=Actinomycetia... [more]
A0A8F4FQ08_9ACTN4.330e-1663.33DNA replication and repair protein RecF n=1 Tax=Aq... [more]
A0A4P5RE52_9ACTN6.350e-1659.68DNA replication and repair protein RecF n=1 Tax=Ac... [more]
A0A7V9GFD8_9ACTN6.450e-1658.06DNA replication and repair protein RecF (Fragment)... [more]
A0A0R2QQJ5_9ACTN1.170e-1556.45DNA replication and repair protein RecF n=6 Tax=ro... [more]
A0A7K0LDS9_9ACTN4.360e-1558.06DNA replication and repair protein RecF n=6 Tax=ro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038729Rad50/SbcC-type AAA domainPFAMPF13476AAA_23coord: 8..50
e-value: 5.6E-14
score: 53.1
NoneNo IPR availableGENE3D3.40.50.300coord: 2..64
e-value: 7.3E-20
score: 73.8
NoneNo IPR availablePANTHERPTHR32182FAMILY NOT NAMEDcoord: 5..64
IPR001238DNA-binding, RecFPANTHERPTHR32182:SF0DNA REPLICATION AND REPAIR PROTEIN RECFcoord: 5..64
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65793contigM-pyrifera_M_contig65793:3..194 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65793.15978.1mRNA_M-pyrifera_M_contig65793.15978.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig65793 3..194 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig65793.15978.1 ID=prot_M-pyrifera_M_contig65793.15978.1|Name=mRNA_M-pyrifera_M_contig65793.15978.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
RSVLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAG
MGSFRGVPDDALIR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038729Rad50/SbcC_AAA
IPR001238DNA-binding_RecF
IPR027417P-loop_NTPase