mRNA_M-pyrifera_M_contig65793.15978.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65793.15978.1
Unique NamemRNA_M-pyrifera_M_contig65793.15978.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A7X5WPS9_9ACTN (DNA replication and repair protein RecF (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WPS9_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 1.670e-24
Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    7 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            +L+R+LEL++FRSYE+A +    GLTAI+GENGQGKTNLLEAIGWIAG+GSFRGVPDDAL+R
Sbjct:    1 MLLRSLELRDFRSYESADIEFGPGLTAIIGENGQGKTNLLEAIGWIAGLGSFRGVPDDALVR 62
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BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A2E0T4N1_9ACTN (DNA replication and repair protein RecF (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T4N1_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 1.080e-19
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   13 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            IR+L L ++RSY +  ++  DGLTA+VGENG GKTNL+E+I W++G GSFRG PDDAL+R
Sbjct:    3 IRSLSLTDWRSYRSVEVSFGDGLTAVVGENGHGKTNLIESIAWMSGAGSFRGAPDDALVR 62
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BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A2D8LWR9_9ACTN (DNA replication and repair protein RecF n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LWR9_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 4.630e-18
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   13 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            IR+L L ++RSY +  ++  DGLTAIVGENG GKTNL+E+I W++G+GSFRG PDDALIR
Sbjct:    3 IRSLSLTDWRSYRSVEVSFXDGLTAIVGENGHGKTNLIESIAWMSGVGSFRGAPDDALIR 62
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BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A6B1AUV1_9ACTN (DNA replication and repair protein RecF n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AUV1_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 2.360e-17
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   13 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            I+TLEL +FR Y  A++    GLT IVGENGQGKT+LLEAI WIAG GSFRGV DD+LIR
Sbjct:    3 IQTLELLDFRIYTQAAVEFDPGLTVIVGENGQGKTSLLEAISWIAGRGSFRGVADDSLIR 62
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BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A6I3FK88_9ACTN (AAA family ATPase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3FK88_9ACTN)

HSP 1 Score: 76.6 bits (187), Expect = 5.210e-17
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   13 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            +R L L +FRSY +A LT + GLTA++G NGQGKTN++EA+G++A + SFRG P+DAL+R
Sbjct:    3 LRQLWLTDFRSYPSAELTFAPGLTALLGANGQGKTNVMEAVGYLATLSSFRGAPNDALVR 62
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BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A8F4FQ08_9ACTN (DNA replication and repair protein RecF n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FQ08_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 4.330e-16
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   13 IRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            +R L L +FR Y  A +T + GLTA+VG NGQGKTNLLEA+G++A +GSFRG P+DALIR
Sbjct:    3 LRRLWLTDFRGYHEADVTFAPGLTAVVGPNGQGKTNLLEAVGYLATLGSFRGAPNDALIR 62
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BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A4P5RE52_9ACTN (DNA replication and repair protein RecF n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5RE52_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 6.350e-16
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    7 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            ++I+ LEL NFR+Y A ++ L+ G+TA+VG NGQGKTNL+EA+G++A + SFRGVP +ALIR
Sbjct:    1 MIIQHLELTNFRNYAATTIDLTSGVTAVVGNNGQGKTNLVEALGYLATLKSFRGVPTEALIR 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A7V9GFD8_9ACTN (DNA replication and repair protein RecF (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GFD8_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 6.450e-16
Identity = 36/62 (58.06%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    7 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            +L+RT+ L +FRSY +A+LTL+ GLTA++G+NG+GK+NLLEA+ W A + SFRG P +AL+R
Sbjct:    1 MLVRTVWLTDFRSYPSATLTLAPGLTAVLGDNGRGKSNLLEAVAWPATLSSFRGAPTEALVR 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A0R2QQJ5_9ACTN (DNA replication and repair protein RecF n=6 Tax=root TaxID=1 RepID=A0A0R2QQJ5_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.170e-15
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    7 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            ++I+ LEL +FR+Y +A +TL+DG+TA++G NGQGKTNL+EA+ ++A + SFRGVP +A+IR
Sbjct:    1 MIIQHLELTDFRNYASAQITLTDGVTAVIGNNGQGKTNLVEALSYLATLKSFRGVPTEAMIR 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Match: A0A7K0LDS9_9ACTN (DNA replication and repair protein RecF n=6 Tax=root TaxID=1 RepID=A0A7K0LDS9_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 4.360e-15
Identity = 36/62 (58.06%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    7 VLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAGMGSFRGVPDDALIR 192
            ++I+ LEL NFR+Y +A+++L+ G+TAIVG NGQGKTNL EA+ ++A + SFRGVP++A+IR
Sbjct:    1 MIIQHLELTNFRNYASATISLTTGVTAIVGNNGQGKTNLTEALSFLATLKSFRGVPNEAMIR 62
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65793.15978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WPS9_9ACTN1.670e-2475.81DNA replication and repair protein RecF (Fragment)... [more]
A0A2E0T4N1_9ACTN1.080e-1961.67DNA replication and repair protein RecF (Fragment)... [more]
A0A2D8LWR9_9ACTN4.630e-1865.00DNA replication and repair protein RecF n=5 Tax=Ac... [more]
A0A6B1AUV1_9ACTN2.360e-1770.00DNA replication and repair protein RecF n=1 Tax=Ac... [more]
A0A6I3FK88_9ACTN5.210e-1758.33AAA family ATPase (Fragment) n=1 Tax=Actinomycetia... [more]
A0A8F4FQ08_9ACTN4.330e-1663.33DNA replication and repair protein RecF n=1 Tax=Aq... [more]
A0A4P5RE52_9ACTN6.350e-1659.68DNA replication and repair protein RecF n=1 Tax=Ac... [more]
A0A7V9GFD8_9ACTN6.450e-1658.06DNA replication and repair protein RecF (Fragment)... [more]
A0A0R2QQJ5_9ACTN1.170e-1556.45DNA replication and repair protein RecF n=6 Tax=ro... [more]
A0A7K0LDS9_9ACTN4.360e-1558.06DNA replication and repair protein RecF n=6 Tax=ro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65793contigM-pyrifera_M_contig65793:3..194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog1313172.YM304_00030
Preferred namerecF
KEGG koko:K03629,ko:K07459
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0018130,GO:0019438,GO:0031668,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
EggNOG OGs2GJCS@201174,4CN4M@84992,COG1195@1,COG1195@2
COG Functional cat.L
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.1503975-CDS-M-pyrifera_M_contig65793:2..1941622816546.1503975-CDS-M-pyrifera_M_contig65793:2..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65793 3..194 -
1692278038.9287944-CDS-M-pyrifera_M_contig65793:2..1941692278038.9287944-CDS-M-pyrifera_M_contig65793:2..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65793 3..194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65793.15978.1prot_M-pyrifera_M_contig65793.15978.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65793 3..194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65793.15978.1

>prot_M-pyrifera_M_contig65793.15978.1 ID=prot_M-pyrifera_M_contig65793.15978.1|Name=mRNA_M-pyrifera_M_contig65793.15978.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
RSVLIRTLELQNFRSYEAASLTLSDGLTAIVGENGQGKTNLLEAIGWIAG
MGSFRGVPDDALIR
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mRNA from alignment at M-pyrifera_M_contig65793:3..194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65793.15978.1 ID=mRNA_M-pyrifera_M_contig65793.15978.1|Name=mRNA_M-pyrifera_M_contig65793.15978.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig65793:3..194- (Macrocystis pyrifera P11B4 male)
CGGTCTGTGCTGATCCGGACGCTCGAACTCCAGAACTTCCGGTCCTACGA
AGCAGCCTCGCTGACGCTGTCCGACGGCCTCACCGCGATCGTCGGCGAGA
ACGGTCAGGGCAAGACCAACCTGCTCGAAGCGATCGGCTGGATCGCAGGG
ATGGGGTCGTTTCGTGGAGTTCCCGACGATGCACTCATCCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65793:3..194-

>mRNA_M-pyrifera_M_contig65793.15978.1 ID=mRNA_M-pyrifera_M_contig65793.15978.1|Name=mRNA_M-pyrifera_M_contig65793.15978.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig65793:3..194- (Macrocystis pyrifera P11B4 male)
CGGTCTGTGCTGATCCGGACGCTCGAACTCCAGAACTTCCGGTCCTACGA
AGCAGCCTCGCTGACGCTGTCCGACGGCCTCACCGCGATCGTCGGCGAGA
ACGGTCAGGGCAAGACCAACCTGCTCGAAGCGATCGGCTGGATCGCAGGG
ATGGGGTCGTTTCGTGGAGTTCCCGACGATGCACTCATCCGGCGGTCTGT
GCTGATCCGGACGCTCGAACTCCAGAACTTCCGGTCCTACGAAGCAGCCT
CGCTGACGCTGTCCGACGGCCTCACCGCGATCGTCGGCGAGAACGGTCAG
GGCAAGACCAACCTGCTCGAAGCGATCGGCTGGATCGCAGGGATGGGGTC
GTTTCGTGGAGTTCCCGACGATGCACTCATCCGG
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