mRNA_M-pyrifera_M_contig107227.1553.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107227.1553.1
Unique NamemRNA_M-pyrifera_M_contig107227.1553.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107227.1553.1 vs. uniprot
Match: A0A661GVL5_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GVL5_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 4.270e-5
Identity = 25/39 (64.10%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 RQAAEQGSATAQFNLGSAYSLGTGVTQSDTEAASWYLLA 117
            R  A+QG+ATAQFNLG  Y LG GV   D EA  WYLLA
Sbjct:   52 RDLAQQGNATAQFNLGQLYRLGNGVKADDREALKWYLLA 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107227.1553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A661GVL5_9GAMM4.270e-564.10Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107227contigM-pyrifera_M_contig107227:229..621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.5766375-CDS-M-pyrifera_M_contig107227:228..6211622815582.5766375-CDS-M-pyrifera_M_contig107227:228..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107227 229..621 -
1692277474.1041083-CDS-M-pyrifera_M_contig107227:228..6211692277474.1041083-CDS-M-pyrifera_M_contig107227:228..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107227 229..621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107227.1553.1prot_M-pyrifera_M_contig107227.1553.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107227 229..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107227.1553.1

>prot_M-pyrifera_M_contig107227.1553.1 ID=prot_M-pyrifera_M_contig107227.1553.1|Name=mRNA_M-pyrifera_M_contig107227.1553.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
RQAAEQGSATAQFNLGSAYSLGTGVTQSDTEAASWYLLAAEQGDPGAQLN
LGNMYYQGRGVERSMEKSTQWYRLSAEQGKPDAQYFLAEAFAEGRGVSQD
FSKAVHWYLRAAQNGDNDAKEDLQKLAEQGV
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mRNA from alignment at M-pyrifera_M_contig107227:229..621-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107227.1553.1 ID=mRNA_M-pyrifera_M_contig107227.1553.1|Name=mRNA_M-pyrifera_M_contig107227.1553.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig107227:229..621- (Macrocystis pyrifera P11B4 male)
CGACAAGCGGCCGAACAAGGTAGTGCTACCGCACAGTTCAATTTAGGGTC
TGCTTATTCCCTAGGTACTGGAGTAACTCAAAGTGATACGGAGGCCGCTT
CTTGGTATTTGTTGGCTGCAGAACAAGGAGATCCTGGTGCCCAGCTTAAC
CTTGGAAATATGTATTATCAGGGCCGCGGCGTCGAGCGTAGTATGGAAAA
ATCAACTCAGTGGTATCGACTTTCAGCTGAGCAGGGCAAGCCCGATGCTC
AGTATTTTTTGGCTGAAGCTTTTGCAGAAGGCAGAGGGGTTTCCCAAGAC
TTTTCGAAAGCAGTTCACTGGTACTTACGAGCAGCACAGAATGGCGATAA
TGACGCAAAAGAGGATTTACAAAAACTTGCTGAGCAGGGAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107227:229..621-

>mRNA_M-pyrifera_M_contig107227.1553.1 ID=mRNA_M-pyrifera_M_contig107227.1553.1|Name=mRNA_M-pyrifera_M_contig107227.1553.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig107227:229..621- (Macrocystis pyrifera P11B4 male)
CGACAAGCGGCCGAACAAGGTAGTGCTACCGCACAGTTCAATTTAGGGTC
TGCTTATTCCCTAGGTACTGGAGTAACTCAAAGTGATACGGAGGCCGCTT
CTTGGTATTTGTTGGCTGCAGAACAAGGAGATCCTGGTGCCCAGCTTAAC
CTTGGAAATATGTATTATCAGGGCCGCGGCGTCGAGCGTAGTATGGAAAA
ATCAACTCAGTGGTATCGACTTTCAGCTGAGCAGGGCAAGCCCGATGCTC
AGTATTTTTTGGCTGAAGCTTTTGCAGAAGGCAGAGGGGTTTCCCAAGAC
TTTTCGAAAGCAGTTCACTGGTACTTACGAGCAGCACAGAATGGCGATAA
TGACGCAAAAGAGGATTTACAAAAACTTGCTGAGCAGGGAGTACGACAAG
CGGCCGAACAAGGTAGTGCTACCGCACAGTTCAATTTAGGGTCTGCTTAT
TCCCTAGGTACTGGAGTAACTCAAAGTGATACGGAGGCCGCTTCTTGGTA
TTTGTTGGCTGCAGAACAAGGAGATCCTGGTGCCCAGCTTAACCTTGGAA
ATATGTATTATCAGGGCCGCGGCGTCGAGCGTAGTATGGAAAAATCAACT
CAGTGGTATCGACTTTCAGCTGAGCAGGGCAAGCCCGATGCTCAGTATTT
TTTGGCTGAAGCTTTTGCAGAAGGCAGAGGGGTTTCCCAAGACTTTTCGA
AAGCAGTTCACTGGTACTTACGAGCAGCACAGAATGGCGATAATGACGCA
AAAGAGGATTTACAAAAACTTGCTGAGCAGGGAGTA
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