mRNA_M-pyrifera_M_contig106924.1484.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106924.1484.1
Unique NamemRNA_M-pyrifera_M_contig106924.1484.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: A0A0M0K731_9EUKA (Wd40 repeat-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K731_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 1.120e-18
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDVAAAAP 237
            VRDVQ+ P      RFAAAL+NGA+Q +D+R  ++P+    AH   +  L WHP    +LATGGRD+ VRVWD++AA P
Sbjct:  142 VRDVQFCPH--APTRFAAALENGAVQFFDVRSNKQPLLQLQAHQGPVYCLEWHPEERNVLATGGRDKAVRVWDLSAALP 218          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: UPI000D72C5EE (GATOR complex protein WDR24-like isoform X4 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72C5EE)

HSP 1 Score: 88.2 bits (217), Expect = 1.720e-18
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDVA 225
            VRD+Q+ P   G   FAAA +NG +Q+WD+R+P R    F+AHN+ + +L WHP     LAT GRD++++VWDV+
Sbjct:  220 VRDIQFSPPNLGYFTFAAAYENGIVQIWDMRRPDRCEKQFTAHNEPVFSLDWHPEDKSWLATAGRDKMIKVWDVS 294          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: A0A2T7PAR7_POMCA (GATOR complex protein WDR24 n=4 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PAR7_POMCA)

HSP 1 Score: 88.2 bits (217), Expect = 1.740e-18
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDVA 225
            VRD+Q+ P   G   FAAA +NG +Q+WD+R+P R    F+AHN+ + +L WHP     LAT GRD++++VWDV+
Sbjct:  210 VRDIQFSPPNLGYFTFAAAYENGIVQIWDMRRPDRCEKQFTAHNEPVFSLDWHPEDKSWLATAGRDKMIKVWDVS 284          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: A0A5D6XR99_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR99_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.550e-17
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDV 222
            VRDV+  P      RFAAA +NG +QVWD+R+  +P   F+AH  +++AL WHP  P +LA+GGRDR V++WD+
Sbjct:  152 VRDVRMSPF--DPHRFAAAFENGIVQVWDIRKNAQPQLKFTAHKGLVLALDWHPTRPHVLASGGRDRYVKIWDL 223          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: A0A067BHR4_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BHR4_SAPPC)

HSP 1 Score: 83.6 bits (205), Expect = 2.140e-17
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDV 222
            VRDV++ P   G+ +FAAA +NG ++VW+L   ++P   F+AH   I++L WHP  P ++ATG RDR V++WD+
Sbjct:  157 VRDVKFSPY--GDTKFAAAFENGTVEVWELGNNKKPEITFTAHQGHILSLDWHPTQPSVIATGSRDRSVKIWDL 228          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: A0A0L8HFI6_OCTBM (GATOR complex protein WDR24 n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8HFI6_OCTBM)

HSP 1 Score: 84.7 bits (208), Expect = 2.860e-17
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDV 222
            VRDVQ+ P   G  RFAA L+NG +Q WD+R+P RP    +AH   +  L W+P     LATGGRDR ++VWD+
Sbjct:  169 VRDVQFCPQSSGYFRFAAGLENGIVQEWDIRRPDRPDREITAHTGPVFTLDWNPMDKNWLATGGRDRAIKVWDM 242          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: A0A7E6FFZ1_OCTVU (GATOR complex protein WDR24 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6FFZ1_OCTVU)

HSP 1 Score: 84.3 bits (207), Expect = 3.800e-17
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDV 222
            VRDVQ+ P   G  RFAA L+NG +Q WD+R+P RP     AH   +  L W+P     LATGGRDR +RVWD+
Sbjct:   49 VRDVQFCPHSSGYFRFAAGLENGIVQEWDIRRPDRPDREIIAHTGPVFTLDWNPMDKNWLATGGRDRAIRVWDM 122          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: A0A812D905_SEPPH (GATOR complex protein WDR24 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D905_SEPPH)

HSP 1 Score: 84.3 bits (207), Expect = 3.920e-17
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHP---NWPGILATGGRDRVVRVWDV 222
            VRDVQ+ P   G  RFAA L+NG +Q WD+R+P RP    +AH   +  L W+P   NW   LATGGRDR ++VWD+
Sbjct:  179 VRDVQFCPQTDGYFRFAAGLENGIVQEWDIRRPDRPEREITAHTGPVFTLDWNPIDKNW---LATGGRDRAIKVWDL 252          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: UPI001401DF19 (GATOR complex protein WDR24 isoform X1 n=3 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001401DF19)

HSP 1 Score: 84.0 bits (206), Expect = 5.340e-17
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 VRDVQWDPSRGGEC-RFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDVAAA 231
            VRDVQ+ P    +C  FAA  +NG +Q+WD+R+  R    F+AHN  +    WHP+  G LATGGRD++V+VWDVA+A
Sbjct:  212 VRDVQFSPR---DCFSFAATFENGNVQLWDIRRSDRAERMFTAHNGPVFTCDWHPDERGWLATGGRDKLVKVWDVASA 286          
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Match: A0A8C4R702_EPTBU (GATOR complex protein WDR24 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R702_EPTBU)

HSP 1 Score: 83.6 bits (205), Expect = 7.210e-17
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVALAWHPNWPGILATGGRDRVVRVWDVAAAAP 237
            VRDVQ+ P       FAA+ +NG +Q+WDLR+  R    F+AHN  + +  WHP   G LATGGRD++V+VWD+A+A P
Sbjct:  160 VRDVQFSPR--DYFAFAASFENGNVQLWDLRRSDRCERMFTAHNGPVFSCDWHPEDRGWLATGGRDKMVKVWDMASARP 236          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106924.1484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0M0K731_9EUKA1.120e-1850.63Wd40 repeat-containing protein n=1 Tax=Chrysochrom... [more]
UPI000D72C5EE1.720e-1848.00GATOR complex protein WDR24-like isoform X4 n=1 Ta... [more]
A0A2T7PAR7_POMCA1.740e-1848.00GATOR complex protein WDR24 n=4 Tax=Pomacea canali... [more]
A0A5D6XR99_9STRA1.550e-1750.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067BHR4_SAPPC2.140e-1745.95Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A0L8HFI6_OCTBM2.860e-1750.00GATOR complex protein WDR24 n=2 Tax=Octopus TaxID=... [more]
A0A7E6FFZ1_OCTVU3.800e-1751.35GATOR complex protein WDR24 n=1 Tax=Octopus vulgar... [more]
A0A812D905_SEPPH3.920e-1750.65GATOR complex protein WDR24 n=1 Tax=Sepia pharaoni... [more]
UPI001401DF195.340e-1750.00GATOR complex protein WDR24 isoform X1 n=3 Tax=Pet... [more]
A0A8C4R702_EPTBU7.210e-1749.37GATOR complex protein WDR24 n=1 Tax=Eptatretus bur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106924contigM-pyrifera_M_contig106924:171..428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue7.8e-15
Seed eggNOG ortholog42099.EPrPV00000014090
KEGG koko:K20408
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD repeat
EggNOG OGs1MF7Z@121069,KOG0269@1,KOG0269@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.0823658-CDS-M-pyrifera_M_contig106924:170..4281622815579.0823658-CDS-M-pyrifera_M_contig106924:170..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106924 171..428 +
1692277472.562236-CDS-M-pyrifera_M_contig106924:170..4281692277472.562236-CDS-M-pyrifera_M_contig106924:170..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106924 171..428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106924.1484.1prot_M-pyrifera_M_contig106924.1484.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106924 171..428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106924.1484.1

>prot_M-pyrifera_M_contig106924.1484.1 ID=prot_M-pyrifera_M_contig106924.1484.1|Name=mRNA_M-pyrifera_M_contig106924.1484.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
VRDVQWDPSRGGECRFAAALDNGAIQVWDLRQPRRPVGYFSAHNDMIVAL
AWHPNWPGILATGGRDRVVRVWDVAAAAPTILSTLP
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mRNA from alignment at M-pyrifera_M_contig106924:171..428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106924.1484.1 ID=mRNA_M-pyrifera_M_contig106924.1484.1|Name=mRNA_M-pyrifera_M_contig106924.1484.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig106924:171..428+ (Macrocystis pyrifera P11B4 male)
GTGCGGGATGTGCAATGGGATCCCAGTAGGGGTGGAGAGTGTAGGTTTGC GGCAGCTCTGGACAATGGTGCGATTCAAGTGTGGGACTTGCGGCAACCAA GACGGCCTGTGGGATACTTTAGTGCTCACAATGACATGATTGTGGCATTG GCTTGGCATCCCAACTGGCCTGGGATTCTGGCCACTGGAGGCAGAGATCG AGTGGTCAGAGTGTGGGATGTAGCAGCTGCCGCACCCACCATCCTCTCCA CTCTCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106924:171..428+

>mRNA_M-pyrifera_M_contig106924.1484.1 ID=mRNA_M-pyrifera_M_contig106924.1484.1|Name=mRNA_M-pyrifera_M_contig106924.1484.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig106924:171..428+ (Macrocystis pyrifera P11B4 male)
GTGCGGGATGTGCAATGGGATCCCAGTAGGGGTGGAGAGTGTAGGTTTGC
GGCAGCTCTGGACAATGGTGCGATTCAAGTGTGGGACTTGCGGCAACCAA
GACGGCCTGTGGGATACTTTAGTGCTCACAATGACATGATTGTGGCATTG
GCTTGGCATCCCAACTGGCCTGGGATTCTGGCCACTGGAGGCAGAGATCG
AGTGGTCAGAGTGTGGGATGTAGCAGCTGCCGCACCCACCATCCTCTCCA
CTCTCCCCGTGCGGGATGTGCAATGGGATCCCAGTAGGGGTGGAGAGTGT
AGGTTTGCGGCAGCTCTGGACAATGGTGCGATTCAAGTGTGGGACTTGCG
GCAACCAAGACGGCCTGTGGGATACTTTAGTGCTCACAATGACATGATTG
TGGCATTGGCTTGGCATCCCAACTGGCCTGGGATTCTGGCCACTGGAGGC
AGAGATCGAGTGGTCAGAGTGTGGGATGTAGCAGCTGCCGCACCCACCAT
CCTCTCCACTCTCCCC
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