prot_M-pyrifera_M_contig100613.135.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig100613.135.1
Unique Nameprot_M-pyrifera_M_contig100613.135.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length51
Homology
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BLAST of mRNA_M-pyrifera_M_contig100613.135.1 vs. uniprot
Match: A0A6H5KAV0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAV0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.270e-10
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0 
Query:    1 GVSGTFITPHEVLLLEAFSLGKTVRMLAVLDGLILLINCASFPVLLLLIVW 51
            GV+G F+ PHE  L+EA SL KT+R LAV DGLIL+INC  FP+LLLL++W
Sbjct:   88 GVAG-FMAPHEAKLMEASSLAKTIRWLAVFDGLILVINCGYFPMLLLLLLW 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100613.135.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAV0_9PHAE3.270e-1064.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..51
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100613contigM-pyrifera_M_contig100613:293..445 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100613.135.1mRNA_M-pyrifera_M_contig100613.135.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig100613 293..445 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig100613.135.1 ID=prot_M-pyrifera_M_contig100613.135.1|Name=mRNA_M-pyrifera_M_contig100613.135.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
GVSGTFITPHEVLLLEAFSLGKTVRMLAVLDGLILLINCASFPVLLLLIV
W
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