mRNA_M-pyrifera_M_contig100613.135.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100613.135.1
Unique NamemRNA_M-pyrifera_M_contig100613.135.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100613.135.1 vs. uniprot
Match: A0A6H5KAV0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAV0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.270e-10
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 GVSGTFITPHEVLLLEAFSLGKTVRMLAVLDGLILLINCASFPVLLLLIVW 153
            GV+G F+ PHE  L+EA SL KT+R LAV DGLIL+INC  FP+LLLL++W
Sbjct:   88 GVAG-FMAPHEAKLMEASSLAKTIRWLAVFDGLILVINCGYFPMLLLLLLW 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100613.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAV0_9PHAE3.270e-1064.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100613contigM-pyrifera_M_contig100613:293..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005480.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.9927404-CDS-M-pyrifera_M_contig100613:292..4451622815502.9927404-CDS-M-pyrifera_M_contig100613:292..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100613 293..445 +
1692277440.6968255-CDS-M-pyrifera_M_contig100613:292..4451692277440.6968255-CDS-M-pyrifera_M_contig100613:292..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100613 293..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100613.135.1prot_M-pyrifera_M_contig100613.135.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100613 293..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100613.135.1

>prot_M-pyrifera_M_contig100613.135.1 ID=prot_M-pyrifera_M_contig100613.135.1|Name=mRNA_M-pyrifera_M_contig100613.135.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
GVSGTFITPHEVLLLEAFSLGKTVRMLAVLDGLILLINCASFPVLLLLIV
W
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mRNA from alignment at M-pyrifera_M_contig100613:293..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100613.135.1 ID=mRNA_M-pyrifera_M_contig100613.135.1|Name=mRNA_M-pyrifera_M_contig100613.135.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig100613:293..445+ (Macrocystis pyrifera P11B4 male)
GGCGTGTCGGGAACGTTCATTACGCCGCACGAGGTTTTACTTTTGGAGGC
GTTTTCGCTGGGCAAGACGGTTCGAATGCTAGCGGTGCTTGACGGTCTGA
TACTGCTGATCAACTGCGCCTCCTTTCCGGTGCTGCTCCTGCTCATCGTG
TGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100613:293..445+

>mRNA_M-pyrifera_M_contig100613.135.1 ID=mRNA_M-pyrifera_M_contig100613.135.1|Name=mRNA_M-pyrifera_M_contig100613.135.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig100613:293..445+ (Macrocystis pyrifera P11B4 male)
GGCGTGTCGGGAACGTTCATTACGCCGCACGAGGTTTTACTTTTGGAGGC
GTTTTCGCTGGGCAAGACGGTTCGAATGCTAGCGGTGCTTGACGGTCTGA
TACTGCTGATCAACTGCGCCTCCTTTCCGGTGCTGCTCCTGCTCATCGTG
TGGGGCGTGTCGGGAACGTTCATTACGCCGCACGAGGTTTTACTTTTGGA
GGCGTTTTCGCTGGGCAAGACGGTTCGAATGCTAGCGGTGCTTGACGGTC
TGATACTGCTGATCAACTGCGCCTCCTTTCCGGTGCTGCTCCTGCTCATC
GTGTGG
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