mRNA_M-pyrifera_M_contig100538.120.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100538.120.1
Unique NamemRNA_M-pyrifera_M_contig100538.120.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A7K1Z6V6_9ACTN (FtsX-like permease family protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z6V6_9ACTN)

HSP 1 Score: 216 bits (549), Expect = 3.760e-61
Identity = 123/221 (55.66%), Postives = 160/221 (72.40%), Query Frame = 1
Query:    1 ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDLVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVGVAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVPSAMKSNARMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQQSP 663
            ISP LARP+SN +GRWPLA+LLGI GV+T   G  A +G + L+  S+ DL++ FD A +    GA   + +  ++++VG+R VDA+FIMGW  R V+ GV +FL GA GA+ +L GL  +LT  W   + + +G VI  +   LR ++P  +KSNARMARENAGR+PRR+A+AAAALMIGLALVSTA VV SSFKATFA+VLE SVTSDWF+SPS+   P
Sbjct:  504 ISPMLARPLSNIIGRWPLAILLGITGVVTAAAGGLATLGVLFLLITSVIDLISGFDGAALARLLGALALIPVTLSIVLVGVRGVDAAFIMGWKLRWVVAGVGLFLFGAAGAVLLLTGLVAILTAEWGSVVLMPVGVVILGLVVFLRGWLPKTLKSNARMARENAGRNPRRSASAAAALMIGLALVSTAAVVASSFKATFADVLEESVTSDWFVSPSSGGGP 724          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E8L8F2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L8F2_9ACTN)

HSP 1 Score: 184 bits (466), Expect = 7.840e-50
Identity = 119/222 (53.60%), Postives = 147/222 (66.22%), Query Frame = 1
Query:    1 ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDLVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVGVAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVPSAMKSNARMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQQSPT 666
            ISP  A  +   LGRWPLA+LL + G   TLLG AA IG  VL  I    L+TD   A  +   G    +  A  +L +G+R +D SFI+GW   QV   + +FLVGAVG +  L GLAGLLT    +   L +G V+F  A  LRRF+P++M++NARMAREN+ R+P RTA+AA ALMIGLALVSTATVV SSFKATFA++L  SVTSDWFIS + Q  PT
Sbjct:  503 ISPMWAPGIVGALGRWPLAILLLLVGGPLTLLGAAATIGCAVLFAIRFVVLLTDPGFAAGVEVVGFGFAITFALGLLALGLRCIDTSFILGWRVPQVFAAIFVFLVGAVGVVLTLTGLAGLLTLETAEIALLPVGVVLFGAATWLRRFLPTSMRANARMARENSRRNPDRTASAATALMIGLALVSTATVVASSFKATFADILSDSVTSDWFISGNAQGDPT 724          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A7X5WNM9_9ACTN (FtsX-like permease family protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WNM9_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 1.700e-17
Identity = 62/161 (38.51%), Postives = 91/161 (56.52%), Query Frame = 1
Query:    1 ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDLVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVGVAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVPSAMKSNARMAR 483
            +SP LA+PVS+ + RWPLA++LG+ GV+  +LG AA              L+ +F    + G     +       + +VG RAVDASFIMGW +  V+ GV +FL+G +G +  L G+ G +TG   D +A+ IG  +  +A      +P  MK+NARMAR
Sbjct:  248 VSPLLAKPVSDVIARWPLAIMLGVIGVLL-ILGPAA----------GFLMLLVEFAKDPLAGLAPLILATPFLVLIALVGRRAVDASFIMGWHWSSVVGGVVVFLLGLIGGVLALNGILGAITGDPADLVAVPIGIALLVLARVANSGLPRRMKANARMAR 397          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E0T2F5_9ACTN (FtsX domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T2F5_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 1.710e-15
Identity = 64/172 (37.21%), Postives = 89/172 (51.74%), Query Frame = 1
Query:    1 ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDLVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVGVAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVPSAMKSNARMARENAGRSPRRTA 516
            ISP  A  +   LGRWPLA+LL + GV  T+L  AA +       I    L TD   A  +      + L +A  +L VG+R +D SFI+GW F QV+  + +FL                      +   L +G V+   A  LRRF+P++M++NARMAREN+ R+P RTA
Sbjct:  503 ISPTWAPGIVGALGRWPLAILLLLVGVPLTMLSAAASLSFAGFFVIRFVALFTDPGFAAGIEVGAWGLVLTVALILLAVGLRCIDTSFILGWRFPQVIAAILVFLXXXXXXXXXXXXXXXXXXXXXXEIALLPMGVVLLGPATWLRRFLPTSMRANARMARENSRRNPDRTA 674          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E4XJU7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XJU7_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 1.570e-9
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  472 RMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSN 651
            +MAR NAGRSP RTA AA+ALMIGLALV+T +V++ S KAT +E+LE  V SDW++   N
Sbjct:  527 KMARRNAGRSPERTATAASALMIGLALVATVSVISESLKATVSEILEEDVISDWWVQGQN 586          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A538CUP5_9ACTN (ABC transporter permease n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CUP5_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 2.130e-9
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  475 MARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQQSPT 666
            + RENA R+PRRTA+ AAALMIGLALVS A VV  S K +F   L+++V +DWFI PSN  +PT
Sbjct:  536 LGRENAARNPRRTASTAAALMIGLALVSMAAVVGESLKKSFLGTLDNAVEADWFIRPSNNFNPT 599          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A3M2H3E0_ACTSX (ABC transporter permease n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H3E0_ACTSX)

HSP 1 Score: 65.9 bits (159), Expect = 7.050e-9
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  286 QVLVGVAIFLVGAVGALNVLVG-------LAGLLTGAWEDTIALAIGAVIFA--VAWALRRFVPSAMKSNARMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQ 654
            ++LVG A+ +VGAV     L G       +A L+ GA    I + I +  FA  V   L R V        R+ARENA R+PRRT++ AAALMIGLALVS A V+  S +ATF + +++SV + +F+SP N+
Sbjct:  408 RLLVGGALVVVGAVALAFGLFGGFATVALVALLVVGALGVFIGVTIASPAFARPVVQTLGRPVARLFGVPGRLARENAARTPRRTSSTAAALMIGLALVSMAAVIGDSIRATFLDTIDNSVKAQYFLSPVNR 539          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A6L7JI98_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7JI98_9ACTN)

HSP 1 Score: 65.9 bits (159), Expect = 7.160e-9
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  472 RMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQQSP 663
            R+AR+NA RSPRRTA+ A+ALMIGLALVS  TV+  SFK T A+VL+ +V SDW I  ++ + P
Sbjct:  564 RIARQNAARSPRRTASTASALMIGLALVSMVTVLGESFKKTLADVLDDAVNSDWLICVASCEDP 627          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E3JA95_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E3JA95_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-8
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  472 RMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSN 651
            +MAR NAGR+P RTA AA+ALMIGLALV+T +V++ S KAT  ++LE  V SDW++   N
Sbjct:  527 KMARRNAGRNPERTATAASALMIGLALVATVSVISESLKATVGDILEEDVISDWWVQGEN 586          
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E9LBG9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LBG9_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-8
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  472 RMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSN 651
            +MAR NAGR+P RTA AA+ALMIGLALV+T +VV+ S KAT +++LE  V SDW++   N
Sbjct:  527 KMARSNAGRNPDRTATAASALMIGLALVATVSVVSESLKATVSDILEEDVISDWWVQGEN 586          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1Z6V6_9ACTN3.760e-6155.66FtsX-like permease family protein n=2 Tax=Acidimic... [more]
A0A2E8L8F2_9ACTN7.840e-5053.60Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X5WNM9_9ACTN1.700e-1738.51FtsX-like permease family protein (Fragment) n=1 T... [more]
A0A2E0T2F5_9ACTN1.710e-1537.21FtsX domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2E4XJU7_9ACTN1.570e-961.67Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A538CUP5_9ACTN2.130e-960.94ABC transporter permease n=1 Tax=Actinomycetia bac... [more]
A0A3M2H3E0_ACTSX7.050e-943.18ABC transporter permease n=1 Tax=Actinomyces sp. T... [more]
A0A6L7JI98_9ACTN7.160e-959.38ABC transporter permease n=1 Tax=Acidimicrobiia ba... [more]
A0A2E3JA95_9ACTN1.300e-858.33Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E9LBG9_9ACTN1.300e-860.00Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100538contigM-pyrifera_M_contig100538:7..672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog1313172.YM304_34360
KEGG koko:K02004
KEGG TC3.A.1
KEGG ModuleM00258
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ABC-type antimicrobial peptide transport system, permease component
EggNOG OGs2GJTZ@201174,COG0577@1,COG0577@2
COG Functional cat.V
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size666
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.0864778-CDS-M-pyrifera_M_contig100538:6..6721622815502.0864778-CDS-M-pyrifera_M_contig100538:6..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100538 7..672 -
1692277440.3687394-CDS-M-pyrifera_M_contig100538:6..6721692277440.3687394-CDS-M-pyrifera_M_contig100538:6..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100538 7..672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100538.120.1prot_M-pyrifera_M_contig100538.120.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100538 7..672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100538.120.1

>prot_M-pyrifera_M_contig100538.120.1 ID=prot_M-pyrifera_M_contig100538.120.1|Name=mRNA_M-pyrifera_M_contig100538.120.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFD
LVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVG
VAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVP
SAMKSNARMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFA
EVLESSVTSDWFISPSNQQSPT
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mRNA from alignment at M-pyrifera_M_contig100538:7..672-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100538.120.1 ID=mRNA_M-pyrifera_M_contig100538.120.1|Name=mRNA_M-pyrifera_M_contig100538.120.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig100538:7..672- (Macrocystis pyrifera P11B4 male)
ATCAGTCCGGCGTTGGCCCGGCCCGTCAGCAACTTCCTGGGCCGGTGGCC GCTCGCCATGCTGCTGGGCATCGGTGGAGTGATCACCACGCTGCTCGGTG TTGCCGCCGTCATCGGAGCCGTGGTGCTCATCGGCATCTCGCTGTTCGAT CTCGTCACCGACTTCGACCTGGCTGGAGTGCTGGGCTTCTTCGGTGCCTT CATCCCCCTGGCCATCGCTGCCGCGGTGTTGATGGTGGGCATTCGCGCCG TCGACGCGTCGTTCATCATGGGTTGGACCTTCCGCCAGGTCCTGGTGGGC GTGGCGATCTTCCTCGTGGGTGCCGTGGGTGCGCTCAACGTGCTCGTCGG CCTCGCCGGGCTCCTCACCGGGGCGTGGGAGGACACCATCGCTCTGGCCA TCGGTGCCGTGATCTTCGCGGTCGCCTGGGCGCTGCGGCGCTTCGTGCCG TCGGCCATGAAGTCCAACGCCCGTATGGCCCGCGAAAACGCCGGTCGCAG CCCGCGCCGTACCGCGGCGGCCGCTGCCGCGCTGATGATCGGCCTCGCGC TCGTGAGCACGGCCACGGTGGTCACCTCATCGTTCAAGGCGACCTTCGCC GAGGTACTGGAGTCATCGGTCACCTCCGACTGGTTCATCTCGCCGAGCAA TCAGCAGAGCCCCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100538:7..672-

>mRNA_M-pyrifera_M_contig100538.120.1 ID=mRNA_M-pyrifera_M_contig100538.120.1|Name=mRNA_M-pyrifera_M_contig100538.120.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig100538:7..672- (Macrocystis pyrifera P11B4 male)
ATCAGTCCGGCGTTGGCCCGGCCCGTCAGCAACTTCCTGGGCCGGTGGCC
GCTCGCCATGCTGCTGGGCATCGGTGGAGTGATCACCACGCTGCTCGGTG
TTGCCGCCGTCATCGGAGCCGTGGTGCTCATCGGCATCTCGCTGTTCGAT
CTCGTCACCGACTTCGACCTGGCTGGAGTGCTGGGCTTCTTCGGTGCCTT
CATCCCCCTGGCCATCGCTGCCGCGGTGTTGATGGTGGGCATTCGCGCCG
TCGACGCGTCGTTCATCATGGGTTGGACCTTCCGCCAGGTCCTGGTGGGC
GTGGCGATCTTCCTCGTGGGTGCCGTGGGTGCGCTCAACGTGCTCGTCGG
CCTCGCCGGGCTCCTCACCGGGGCGTGGGAGGACACCATCGCTCTGGCCA
TCGGTGCCGTGATCTTCGCGGTCGCCTGGGCGCTGCGGCGCTTCGTGCCG
TCGGCCATGAAGTCCAACGCCCGTATGGCCCGCGAAAACGCCGGTCGCAG
CCCGCGCCGTACCGCGGCGGCCGCTGCCGCGCTGATGATCGGCCTCGCGC
TCGTGAGCACGGCCACGGTGGTCACCTCATCGTTCAAGGCGACCTTCGCC
GAGGTACTGGAGTCATCGGTCACCTCCGACTGGTTCATCTCGCCGAGCAA
TCAGCAGAGCCCCACCATCAGTCCGGCGTTGGCCCGGCCCGTCAGCAACT
TCCTGGGCCGGTGGCCGCTCGCCATGCTGCTGGGCATCGGTGGAGTGATC
ACCACGCTGCTCGGTGTTGCCGCCGTCATCGGAGCCGTGGTGCTCATCGG
CATCTCGCTGTTCGATCTCGTCACCGACTTCGACCTGGCTGGAGTGCTGG
GCTTCTTCGGTGCCTTCATCCCCCTGGCCATCGCTGCCGCGGTGTTGATG
GTGGGCATTCGCGCCGTCGACGCGTCGTTCATCATGGGTTGGACCTTCCG
CCAGGTCCTGGTGGGCGTGGCGATCTTCCTCGTGGGTGCCGTGGGTGCGC
TCAACGTGCTCGTCGGCCTCGCCGGGCTCCTCACCGGGGCGTGGGAGGAC
ACCATCGCTCTGGCCATCGGTGCCGTGATCTTCGCGGTCGCCTGGGCGCT
GCGGCGCTTCGTGCCGTCGGCCATGAAGTCCAACGCCCGTATGGCCCGCG
AAAACGCCGGTCGCAGCCCGCGCCGTACCGCGGCGGCCGCTGCCGCGCTG
ATGATCGGCCTCGCGCTCGTGAGCACGGCCACGGTGGTCACCTCATCGTT
CAAGGCGACCTTCGCCGAGGTACTGGAGTCATCGGTCACCTCCGACTGGT
TCATCTCGCCGAGCAATCAGCAGAGCCCCACC
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