mRNA_M-pyrifera_M_contig100538.120.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A7K1Z6V6_9ACTN (FtsX-like permease family protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z6V6_9ACTN) HSP 1 Score: 216 bits (549), Expect = 3.760e-61 Identity = 123/221 (55.66%), Postives = 160/221 (72.40%), Query Frame = 1 Query: 1 ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDLVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVGVAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVPSAMKSNARMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQQSP 663 ISP LARP+SN +GRWPLA+LLGI GV+T G A +G + L+ S+ DL++ FD A + GA + + ++++VG+R VDA+FIMGW R V+ GV +FL GA GA+ +L GL +LT W + + +G VI + LR ++P +KSNARMARENAGR+PRR+A+AAAALMIGLALVSTA VV SSFKATFA+VLE SVTSDWF+SPS+ P Sbjct: 504 ISPMLARPLSNIIGRWPLAILLGITGVVTAAAGGLATLGVLFLLITSVIDLISGFDGAALARLLGALALIPVTLSIVLVGVRGVDAAFIMGWKLRWVVAGVGLFLFGAAGAVLLLTGLVAILTAEWGSVVLMPVGVVILGLVVFLRGWLPKTLKSNARMARENAGRNPRRSASAAAALMIGLALVSTAAVVASSFKATFADVLEESVTSDWFVSPSSGGGP 724
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E8L8F2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L8F2_9ACTN) HSP 1 Score: 184 bits (466), Expect = 7.840e-50 Identity = 119/222 (53.60%), Postives = 147/222 (66.22%), Query Frame = 1 Query: 1 ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDLVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVGVAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVPSAMKSNARMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQQSPT 666 ISP A + LGRWPLA+LL + G TLLG AA IG VL I L+TD A + G + A +L +G+R +D SFI+GW QV + +FLVGAVG + L GLAGLLT + L +G V+F A LRRF+P++M++NARMAREN+ R+P RTA+AA ALMIGLALVSTATVV SSFKATFA++L SVTSDWFIS + Q PT Sbjct: 503 ISPMWAPGIVGALGRWPLAILLLLVGGPLTLLGAAATIGCAVLFAIRFVVLLTDPGFAAGVEVVGFGFAITFALGLLALGLRCIDTSFILGWRVPQVFAAIFVFLVGAVGVVLTLTGLAGLLTLETAEIALLPVGVVLFGAATWLRRFLPTSMRANARMARENSRRNPDRTASAATALMIGLALVSTATVVASSFKATFADILSDSVTSDWFISGNAQGDPT 724
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A7X5WNM9_9ACTN (FtsX-like permease family protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WNM9_9ACTN) HSP 1 Score: 90.1 bits (222), Expect = 1.700e-17 Identity = 62/161 (38.51%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 1 ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDLVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVGVAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVPSAMKSNARMAR 483 +SP LA+PVS+ + RWPLA++LG+ GV+ +LG AA L+ +F + G + + +VG RAVDASFIMGW + V+ GV +FL+G +G + L G+ G +TG D +A+ IG + +A +P MK+NARMAR Sbjct: 248 VSPLLAKPVSDVIARWPLAIMLGVIGVLL-ILGPAA----------GFLMLLVEFAKDPLAGLAPLILATPFLVLIALVGRRAVDASFIMGWHWSSVVGGVVVFLLGLIGGVLALNGILGAITGDPADLVAVPIGIALLVLARVANSGLPRRMKANARMAR 397
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E0T2F5_9ACTN (FtsX domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T2F5_9ACTN) HSP 1 Score: 85.1 bits (209), Expect = 1.710e-15 Identity = 64/172 (37.21%), Postives = 89/172 (51.74%), Query Frame = 1 Query: 1 ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDLVTDFDLAGVLGFFGAFIPLAIAAAVLMVGIRAVDASFIMGWTFRQVLVGVAIFLVGAVGALNVLVGLAGLLTGAWEDTIALAIGAVIFAVAWALRRFVPSAMKSNARMARENAGRSPRRTA 516 ISP A + LGRWPLA+LL + GV T+L AA + I L TD A + + L +A +L VG+R +D SFI+GW F QV+ + +FL + L +G V+ A LRRF+P++M++NARMAREN+ R+P RTA Sbjct: 503 ISPTWAPGIVGALGRWPLAILLLLVGVPLTMLSAAASLSFAGFFVIRFVALFTDPGFAAGIEVGAWGLVLTVALILLAVGLRCIDTSFILGWRFPQVIAAILVFLXXXXXXXXXXXXXXXXXXXXXXEIALLPMGVVLLGPATWLRRFLPTSMRANARMARENSRRNPDRTA 674
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E4XJU7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XJU7_9ACTN) HSP 1 Score: 67.8 bits (164), Expect = 1.570e-9 Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 472 RMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSN 651 +MAR NAGRSP RTA AA+ALMIGLALV+T +V++ S KAT +E+LE V SDW++ N Sbjct: 527 KMARRNAGRSPERTATAASALMIGLALVATVSVISESLKATVSEILEEDVISDWWVQGQN 586
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A538CUP5_9ACTN (ABC transporter permease n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CUP5_9ACTN) HSP 1 Score: 67.4 bits (163), Expect = 2.130e-9 Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 475 MARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQQSPT 666 + RENA R+PRRTA+ AAALMIGLALVS A VV S K +F L+++V +DWFI PSN +PT Sbjct: 536 LGRENAARNPRRTASTAAALMIGLALVSMAAVVGESLKKSFLGTLDNAVEADWFIRPSNNFNPT 599
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A3M2H3E0_ACTSX (ABC transporter permease n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H3E0_ACTSX) HSP 1 Score: 65.9 bits (159), Expect = 7.050e-9 Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 286 QVLVGVAIFLVGAVGALNVLVG-------LAGLLTGAWEDTIALAIGAVIFA--VAWALRRFVPSAMKSNARMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQ 654 ++LVG A+ +VGAV L G +A L+ GA I + I + FA V L R V R+ARENA R+PRRT++ AAALMIGLALVS A V+ S +ATF + +++SV + +F+SP N+ Sbjct: 408 RLLVGGALVVVGAVALAFGLFGGFATVALVALLVVGALGVFIGVTIASPAFARPVVQTLGRPVARLFGVPGRLARENAARTPRRTSSTAAALMIGLALVSMAAVIGDSIRATFLDTIDNSVKAQYFLSPVNR 539
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A6L7JI98_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7JI98_9ACTN) HSP 1 Score: 65.9 bits (159), Expect = 7.160e-9 Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 472 RMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSNQQSP 663 R+AR+NA RSPRRTA+ A+ALMIGLALVS TV+ SFK T A+VL+ +V SDW I ++ + P Sbjct: 564 RIARQNAARSPRRTASTASALMIGLALVSMVTVLGESFKKTLADVLDDAVNSDWLICVASCEDP 627
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E3JA95_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E3JA95_9ACTN) HSP 1 Score: 65.1 bits (157), Expect = 1.300e-8 Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 Query: 472 RMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSN 651 +MAR NAGR+P RTA AA+ALMIGLALV+T +V++ S KAT ++LE V SDW++ N Sbjct: 527 KMARRNAGRNPERTATAASALMIGLALVATVSVISESLKATVGDILEEDVISDWWVQGEN 586
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Match: A0A2E9LBG9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LBG9_9ACTN) HSP 1 Score: 65.1 bits (157), Expect = 1.300e-8 Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 472 RMARENAGRSPRRTAAAAAALMIGLALVSTATVVTSSFKATFAEVLESSVTSDWFISPSN 651 +MAR NAGR+P RTA AA+ALMIGLALV+T +VV+ S KAT +++LE V SDW++ N Sbjct: 527 KMARSNAGRNPDRTATAASALMIGLALVATVSVVSESLKATVSDILEEDVISDWWVQGEN 586 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100538.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig100538.120.1 >prot_M-pyrifera_M_contig100538.120.1 ID=prot_M-pyrifera_M_contig100538.120.1|Name=mRNA_M-pyrifera_M_contig100538.120.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp ISPALARPVSNFLGRWPLAMLLGIGGVITTLLGVAAVIGAVVLIGISLFDback to top mRNA from alignment at M-pyrifera_M_contig100538:7..672- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig100538.120.1 ID=mRNA_M-pyrifera_M_contig100538.120.1|Name=mRNA_M-pyrifera_M_contig100538.120.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig100538:7..672- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig100538:7..672- >mRNA_M-pyrifera_M_contig100538.120.1 ID=mRNA_M-pyrifera_M_contig100538.120.1|Name=mRNA_M-pyrifera_M_contig100538.120.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig100538:7..672- (Macrocystis pyrifera P11B4 male)back to top |