mRNA_M-pyrifera_M_contig10047.98.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10047.98.1
Unique NamemRNA_M-pyrifera_M_contig10047.98.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10047.98.1 vs. uniprot
Match: A0A6H5K108_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K108_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.290e-17
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 QEVCTTYGDMDNAKRLFSFGFVTLSQHGQRSVSPFDR------LSLPTESFCDVSFPAVSTDPLLDFKESVIQECGREAEDGVS 234
            +EVCTTYGDMDNAKRLFSFGFVTL QH   +  PF R      L+LPTE+FCDV     +TD L   KE+V +E  R A D +S
Sbjct:  344 EEVCTTYGDMDNAKRLFSFGFVTLKQH---AAQPFQRRLTGNMLALPTEAFCDVELTIAATDALRVVKETVFRE--RRAGDDLS 422
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BLAST of mRNA_M-pyrifera_M_contig10047.98.1 vs. uniprot
Match: D7G231_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G231_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 4.480e-17
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 QEVCTTYGDMDNAKRLFSFGFVTLSQHGQRSVSPFDR------LSLPTESFCDVSFPAVSTDPLLDFKESVIQECGREA-EDGVS 234
            +EVCTTYGDMDNAKRLFSFGFVTL QH   +  P  R      L LPTE+FCDV     +TD L  FKE+V++E  R+A ED VS
Sbjct:  344 EEVCTTYGDMDNAKRLFSFGFVTLKQH---AAQPSQRRPAGNMLPLPTEAFCDVELTIAATDELRVFKEAVLRE--RQAGEDLVS 423
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10047.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K108_9PHAE1.290e-1757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G231_ECTSI4.480e-1758.82SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10047contigM-pyrifera_M_contig10047:2601..2846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D7G231
Hectar predicted targeting categoryother localisation
EggNOG OGs2D17T@1,2SH13@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size248
Cds size219
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.7013566-UTR-M-pyrifera_M_contig10047:2600..26271622815500.7013566-UTR-M-pyrifera_M_contig10047:2600..2627Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10047 2601..2627 +
1692277439.6538434-UTR-M-pyrifera_M_contig10047:2600..26271692277439.6538434-UTR-M-pyrifera_M_contig10047:2600..2627Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10047 2601..2627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.7136-CDS-M-pyrifera_M_contig10047:2627..28461622815500.7136-CDS-M-pyrifera_M_contig10047:2627..2846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10047 2628..2846 +
1692277439.665725-CDS-M-pyrifera_M_contig10047:2627..28461692277439.665725-CDS-M-pyrifera_M_contig10047:2627..2846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10047 2628..2846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10047.98.1prot_M-pyrifera_M_contig10047.98.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10047 2628..2846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10047.98.1

>prot_M-pyrifera_M_contig10047.98.1 ID=prot_M-pyrifera_M_contig10047.98.1|Name=mRNA_M-pyrifera_M_contig10047.98.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MDNAKRLFSFGFVTLSQHGQRSVSPFDRLSLPTESFCDVSFPAVSTDPLL
DFKESVIQECGREAEDGVSLLGA
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mRNA from alignment at M-pyrifera_M_contig10047:2601..2846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10047.98.1 ID=mRNA_M-pyrifera_M_contig10047.98.1|Name=mRNA_M-pyrifera_M_contig10047.98.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig10047:2601..2846+ (Macrocystis pyrifera P11B4 male)
CAAGAGGTGTGCACGACGTACGGCGACATGGATAACGCAAAGAGGCTCTT
CTCCTTCGGGTTCGTGACCCTATCTCAGCACGGTCAGCGGTCCGTGTCTC
CTTTCGACCGGCTCTCTCTACCGACTGAATCATTTTGCGACGTTTCGTTT
CCCGCGGTTTCTACCGACCCTTTACTCGACTTCAAGGAGAGCGTCATTCA
AGAATGCGGGCGCGAAGCCGAGGATGGCGTGTCGTTGCTAGGTGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10047:2601..2846+

>mRNA_M-pyrifera_M_contig10047.98.1 ID=mRNA_M-pyrifera_M_contig10047.98.1|Name=mRNA_M-pyrifera_M_contig10047.98.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig10047:2601..2846+ (Macrocystis pyrifera P11B4 male)
ATGGATAACGCAAAGAGGCTCTTCTCCTTCGGGTTCGTGACCCTATCTCA
GCACGGTCAGCGGTCCGTGTCTCCTTTCGACCGGCTCTCTCTACCGACTG
AATCATTTTGCGACGTTTCGTTTCCCGCGGTTTCTACCGACCCTTTACTC
GACTTCAAGGAGAGCGTCATTCAAGAATGCGGGCGCGAAGCCGAGGATGG
CGTGTCGTTGCTAGGTGCGATGGATAACGCAAAGAGGCTCTTCTCCTTCG
GGTTCGTGACCCTATCTCAGCACGGTCAGCGGTCCGTGTCTCCTTTCGAC
CGGCTCTCTCTACCGACTGAATCATTTTGCGACGTTTCGTTTCCCGCGGT
TTCTACCGACCCTTTACTCGACTTCAAGGAGAGCGTCATTCAAGAATGCG
GGCGCGAAGCCGAGGATGGCGTGTCGTTGCTAGGTGCG
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