mRNA_M-pyrifera_M_contig103856.821.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103856.821.1
Unique NamemRNA_M-pyrifera_M_contig103856.821.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103856.821.1 vs. uniprot
Match: A0A087SGA2_AUXPR (Large neutral amino acids transporter small subunit 4 n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SGA2_AUXPR)

HSP 1 Score: 77.8 bits (190), Expect = 1.830e-13
Identity = 50/156 (32.05%), Postives = 86/156 (55.13%), Query Frame = 1 
Query:   73 KLGFWEQVSTPEFLLYIMFGSFSLAKFSFYLGSLRLQLIEITGSESNALPWLSLFSLLFPIGAIADFPVGMLIDRWGIGVSFHVLVVVSVLQSICSLIPNAPLQIATFVLFAIFRAILFTAQANFFSALFGFKSFGRLLAIPTIVGGLLSTLQYPI 540
            KL F EQ  + E     +F + ++    FYLG++RLQL   +   SNA  + +  +++     +    +G L+D+ G G +   ++ +SVL  +   +P+ PLQ+ T +++   R  ++ +    F ALFGF++FGRL+A+  I  GL   LQYP+
Sbjct:  358 KLSFLEQFKSSESFGMGLFYTLNVFTMQFYLGTMRLQL---SNKGSNAETYSNFGNVVVAFAFLLIPVIGWLLDKKGYGSTLGSILGLSVLTLVLQALPSLPLQVVTILIWMTARFFMYASYFAIFGALFGFRNFGRLVAVDNIFNGLFGLLQYPL 510
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BLAST of mRNA_M-pyrifera_M_contig103856.821.1 vs. uniprot
Match: R1BBP7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BBP7_EMIHU)

HSP 1 Score: 56.2 bits (134), Expect = 5.390e-6
Identity = 54/168 (32.14%), Postives = 77/168 (45.83%), Query Frame = 1 
Query:   40 TPRHLVAPPYEKLGFWEQVSTPEFLLYIMFGSFSLAKFSFYLGSLRLQLIEITGS----ESNALPWLSLFSLLFPIGAIADFPVGMLIDRWGIGVSFHVLVVVSVLQSICSLIPNAPLQIATFVLFAIFRAILFTAQANFFSALFGFKSFGRLLAIPTIVGGLLSTLQ 531
            TP  L A P       +QV + EF    +F +  + + + YLGS+ L   E   S    E       SL  L+ P G IA   +   I   G+  +F V   + VL S   L+P+   Q+   V+FA FRA LF+  A F  A FG  S GR++ +   V  L++  Q
Sbjct:  238 TPTELAAKP-----LLQQVRSLEFATVCLFATVQVTRSNLYLGSVDLTNREYASSNGWPEGALESTTSLVGLIVPFGFIAVPFIEASIHLTGLIGTFLVTSALGVLFSCLQLLPSQAAQVGGAVVFAAFRAFLFSTLAAFNGATFGPSSMGRIMGLCMFVSSLVNLCQ 400
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BLAST of mRNA_M-pyrifera_M_contig103856.821.1 vs. uniprot
Match: K3WGB5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGB5_GLOUD)

HSP 1 Score: 52.8 bits (125), Expect = 7.250e-5
Identity = 43/153 (28.10%), Postives = 71/153 (46.41%), Query Frame = 1 
Query:   82 FWEQVSTPEFLLYIMFGSFSLAKFSFYLGSLRLQLIEITGSESNALPWLSLFSLLFPIGAIADFPVGMLIDRWGIGVSFHVLVVVSVLQSICSLIPNAPLQIATFVLFAIFRAILFTAQANFFSALFGFKSFGRLLAIPTIVGGLLSTLQYPI 540
            F  QV +  FLL   F +      +F++GS+  QL     +       L+  +++ P   +    VG L++ WG      +    ++L ++ S      + +  FVL+A+FR ILF+    +    FGF+ FG L  I   VG ++  LQ PI
Sbjct:  285 FKTQVRSAPFLLMCFFFAVESLWCNFFIGSVTAQLRSQHLAPETVSALLAKLAVVLPSSVVFIPLVGYLLEAWGYTHVTFLCAGSALLFTVLSWSTTVGVLLLAFVLYALFRTILFSVLFAYIGQTFGFQHFGALTGIAFCVGAVVGLLQTPI 437
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103856.821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A087SGA2_AUXPR1.830e-1332.05Large neutral amino acids transporter small subuni... [more]
R1BBP7_EMIHU5.390e-632.14Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
K3WGB5_GLOUD7.250e-528.10Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103856contigM-pyrifera_M_contig103856:18..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score81.3
Seed ortholog evalue5.2e-13
Seed eggNOG ortholog109760.SPPG_06294T0
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0016020,GO:0016021,GO:0031090,GO:0031224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805,GO:0098852
EggNOG free text desc.transporter
EggNOG OGs2CMU1@1,2QRYG@2759,38H22@33154,3NU8J@4751
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.4695115-CDS-M-pyrifera_M_contig103856:17..5571622815544.4695115-CDS-M-pyrifera_M_contig103856:17..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103856 18..557 -
1692277456.9837763-CDS-M-pyrifera_M_contig103856:17..5571692277456.9837763-CDS-M-pyrifera_M_contig103856:17..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103856 18..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103856.821.1prot_M-pyrifera_M_contig103856.821.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103856 18..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103856.821.1

>prot_M-pyrifera_M_contig103856.821.1 ID=prot_M-pyrifera_M_contig103856.821.1|Name=mRNA_M-pyrifera_M_contig103856.821.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
SSSIEPSSSQSSLTPRHLVAPPYEKLGFWEQVSTPEFLLYIMFGSFSLAK
FSFYLGSLRLQLIEITGSESNALPWLSLFSLLFPIGAIADFPVGMLIDRW
GIGVSFHVLVVVSVLQSICSLIPNAPLQIATFVLFAIFRAILFTAQANFF
SALFGFKSFGRLLAIPTIVGGLLSTLQYPI
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mRNA from alignment at M-pyrifera_M_contig103856:18..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103856.821.1 ID=mRNA_M-pyrifera_M_contig103856.821.1|Name=mRNA_M-pyrifera_M_contig103856.821.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig103856:18..557- (Macrocystis pyrifera P11B4 male)
TCTTCTTCGATCGAGCCATCTTCTTCGCAGTCTTCGTTGACGCCTCGTCA
CTTGGTGGCACCTCCGTACGAGAAGTTGGGATTTTGGGAGCAAGTTTCGA
CTCCCGAGTTCCTGCTGTACATTATGTTTGGTAGTTTTTCCTTGGCCAAG
TTTTCCTTCTACCTGGGTTCTCTGCGGTTGCAGCTGATTGAGATCACGGG
GAGTGAGAGCAACGCTTTGCCATGGCTGTCTCTCTTCTCGCTGCTCTTTC
CCATTGGCGCCATTGCAGATTTTCCAGTGGGGATGCTCATTGACCGCTGG
GGCATTGGAGTGAGTTTCCATGTGCTCGTGGTTGTCTCCGTGTTGCAGTC
CATATGCTCCCTCATCCCCAACGCGCCCCTCCAAATCGCCACCTTTGTGC
TCTTCGCAATCTTCCGGGCCATTCTCTTCACCGCACAAGCCAACTTCTTC
TCCGCTCTCTTCGGATTCAAATCCTTTGGAAGACTCCTCGCCATCCCGAC
CATCGTTGGGGGTCTCCTCTCCACTCTCCAATACCCCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103856:18..557-

>mRNA_M-pyrifera_M_contig103856.821.1 ID=mRNA_M-pyrifera_M_contig103856.821.1|Name=mRNA_M-pyrifera_M_contig103856.821.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig103856:18..557- (Macrocystis pyrifera P11B4 male)
TCTTCTTCGATCGAGCCATCTTCTTCGCAGTCTTCGTTGACGCCTCGTCA
CTTGGTGGCACCTCCGTACGAGAAGTTGGGATTTTGGGAGCAAGTTTCGA
CTCCCGAGTTCCTGCTGTACATTATGTTTGGTAGTTTTTCCTTGGCCAAG
TTTTCCTTCTACCTGGGTTCTCTGCGGTTGCAGCTGATTGAGATCACGGG
GAGTGAGAGCAACGCTTTGCCATGGCTGTCTCTCTTCTCGCTGCTCTTTC
CCATTGGCGCCATTGCAGATTTTCCAGTGGGGATGCTCATTGACCGCTGG
GGCATTGGAGTGAGTTTCCATGTGCTCGTGGTTGTCTCCGTGTTGCAGTC
CATATGCTCCCTCATCCCCAACGCGCCCCTCCAAATCGCCACCTTTGTGC
TCTTCGCAATCTTCCGGGCCATTCTCTTCACCGCACAAGCCAACTTCTTC
TCCGCTCTCTTCGGATTCAAATCCTTTGGAAGACTCCTCGCCATCCCGAC
CATCGTTGGGGGTCTCCTCTCCACTCTCCAATACCCCATCTCTTCTTCGA
TCGAGCCATCTTCTTCGCAGTCTTCGTTGACGCCTCGTCACTTGGTGGCA
CCTCCGTACGAGAAGTTGGGATTTTGGGAGCAAGTTTCGACTCCCGAGTT
CCTGCTGTACATTATGTTTGGTAGTTTTTCCTTGGCCAAGTTTTCCTTCT
ACCTGGGTTCTCTGCGGTTGCAGCTGATTGAGATCACGGGGAGTGAGAGC
AACGCTTTGCCATGGCTGTCTCTCTTCTCGCTGCTCTTTCCCATTGGCGC
CATTGCAGATTTTCCAGTGGGGATGCTCATTGACCGCTGGGGCATTGGAG
TGAGTTTCCATGTGCTCGTGGTTGTCTCCGTGTTGCAGTCCATATGCTCC
CTCATCCCCAACGCGCCCCTCCAAATCGCCACCTTTGTGCTCTTCGCAAT
CTTCCGGGCCATTCTCTTCACCGCACAAGCCAACTTCTTCTCCGCTCTCT
TCGGATTCAAATCCTTTGGAAGACTCCTCGCCATCCCGACCATCGTTGGG
GGTCTCCTCTCCACTCTCCAATACCCCATC
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