mRNA_M-pyrifera_M_contig103719.792.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103719.792.1
Unique NamemRNA_M-pyrifera_M_contig103719.792.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103719.792.1 vs. uniprot
Match: A0A534W194_9DELT (Carotenoid synthesis regulator CarF n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534W194_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 1.240e-6
Identity = 28/73 (38.36%), Postives = 39/73 (53.42%), Query Frame = 1 
Query:   76 ETLQSGYTPAKRRLEIATIAVFSLLWLAAFWNTFTATGVENQLPITLFAFVVSLFVGDFLAGFVHWFCDTWGS 294
            + L+ GY+PA RR EIA+IA++        W      G    L  +  AF+    + DF++G VHW  DTWGS
Sbjct:   19 KALREGYSPAVRRFEIASIALYCCAMGWFLWGLLPLVGTYPWLMAS--AFMFGFVLADFVSGIVHWAADTWGS 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103719.792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A534W194_9DELT1.240e-638.36Carotenoid synthesis regulator CarF n=1 Tax=Deltap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103719contigM-pyrifera_M_contig103719:1..294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue6.8e-07
Seed eggNOG ortholog44689.DDB0190504
Preferred nameTMEM189
KEGG koko:K10704,ko:K20417,ko:K20656
KEGG Pathwayko04624,map04624
Hectar predicted targeting categorysignal anchor
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016567,GO:0016705,GO:0016740,GO:0019538,GO:0019637,GO:0019752,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031371,GO:0031625,GO:0031967,GO:0031969,GO:0031975,GO:0032446,GO:0032787,GO:0032991,GO:0033554,GO:0033559,GO:0034976,GO:0035370,GO:0036211,GO:0036503,GO:0042170,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046471,GO:0046486,GO:0050896,GO:0051603,GO:0051716,GO:0052637,GO:0055114,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0072330,GO:0080132,GO:0080167,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1902494,GO:1990234
EggNOG free text desc.B domain of TMEM189, localisation domain
EggNOG OGs3XGJH@554915,KOG3011@1,KOG3011@2759
EC1.14.19.43
COG Functional cat.O
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04131
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.234179-CDS-M-pyrifera_M_contig103719:0..2941622815543.234179-CDS-M-pyrifera_M_contig103719:0..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103719 1..294 -
1692277456.5709846-CDS-M-pyrifera_M_contig103719:0..2941692277456.5709846-CDS-M-pyrifera_M_contig103719:0..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103719 1..294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103719.792.1prot_M-pyrifera_M_contig103719.792.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103719 1..294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103719.792.1

>prot_M-pyrifera_M_contig103719.792.1 ID=prot_M-pyrifera_M_contig103719.792.1|Name=mRNA_M-pyrifera_M_contig103719.792.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MAVLTGTPALPKGKELKGGSRNVKLETLQSGYTPAKRRLEIATIAVFSLL
WLAAFWNTFTATGVENQLPITLFAFVVSLFVGDFLAGFVHWFCDTWGS
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mRNA from alignment at M-pyrifera_M_contig103719:1..294-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103719.792.1 ID=mRNA_M-pyrifera_M_contig103719.792.1|Name=mRNA_M-pyrifera_M_contig103719.792.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig103719:1..294- (Macrocystis pyrifera P11B4 male)
ATGGCTGTGCTCACGGGAACGCCTGCGCTGCCGAAGGGCAAAGAGCTGAA
GGGAGGCTCGCGCAACGTGAAGCTGGAGACGCTGCAGTCGGGCTACACGC
CGGCCAAGAGGAGGCTGGAGATCGCCACGATCGCCGTCTTCTCCCTCCTC
TGGCTCGCGGCCTTCTGGAACACCTTCACCGCCACGGGCGTGGAGAACCA
GCTCCCCATCACCCTCTTCGCCTTCGTCGTCAGCCTCTTCGTCGGCGACT
TCCTCGCAGGCTTTGTCCATTGGTTCTGCGATACGTGGGGCTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103719:1..294-

>mRNA_M-pyrifera_M_contig103719.792.1 ID=mRNA_M-pyrifera_M_contig103719.792.1|Name=mRNA_M-pyrifera_M_contig103719.792.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig103719:1..294- (Macrocystis pyrifera P11B4 male)
ATGGCTGTGCTCACGGGAACGCCTGCGCTGCCGAAGGGCAAAGAGCTGAA
GGGAGGCTCGCGCAACGTGAAGCTGGAGACGCTGCAGTCGGGCTACACGC
CGGCCAAGAGGAGGCTGGAGATCGCCACGATCGCCGTCTTCTCCCTCCTC
TGGCTCGCGGCCTTCTGGAACACCTTCACCGCCACGGGCGTGGAGAACCA
GCTCCCCATCACCCTCTTCGCCTTCGTCGTCAGCCTCTTCGTCGGCGACT
TCCTCGCAGGCTTTGTCCATTGGTTCTGCGATACGTGGGGCTCGATGGCT
GTGCTCACGGGAACGCCTGCGCTGCCGAAGGGCAAAGAGCTGAAGGGAGG
CTCGCGCAACGTGAAGCTGGAGACGCTGCAGTCGGGCTACACGCCGGCCA
AGAGGAGGCTGGAGATCGCCACGATCGCCGTCTTCTCCCTCCTCTGGCTC
GCGGCCTTCTGGAACACCTTCACCGCCACGGGCGTGGAGAACCAGCTCCC
CATCACCCTCTTCGCCTTCGTCGTCAGCCTCTTCGTCGGCGACTTCCTCG
CAGGCTTTGTCCATTGGTTCTGCGATACGTGGGGCTCG
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