prot_M-pyrifera_M_contig103719.792.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig103719.792.1
Unique Nameprot_M-pyrifera_M_contig103719.792.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length98
Homology
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BLAST of mRNA_M-pyrifera_M_contig103719.792.1 vs. uniprot
Match: A0A534W194_9DELT (Carotenoid synthesis regulator CarF n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534W194_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 1.240e-6
Identity = 28/73 (38.36%), Postives = 39/73 (53.42%), Query Frame = 0 
Query:   26 ETLQSGYTPAKRRLEIATIAVFSLLWLAAFWNTFTATGVENQLPITLFAFVVSLFVGDFLAGFVHWFCDTWGS 98
            + L+ GY+PA RR EIA+IA++        W      G    L  +  AF+    + DF++G VHW  DTWGS
Sbjct:   19 KALREGYSPAVRRFEIASIALYCCAMGWFLWGLLPLVGTYPWLMAS--AFMFGFVLADFVSGIVHWAADTWGS 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103719.792.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A534W194_9DELT1.240e-638.36Carotenoid synthesis regulator CarF n=1 Tax=Deltap... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 94..98
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..58
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 59..69
NoneNo IPR availableTMHMMTMhelixcoord: 41..60
NoneNo IPR availableTMHMMTMhelixcoord: 70..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103719contigM-pyrifera_M_contig103719:1..294 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103719.792.1mRNA_M-pyrifera_M_contig103719.792.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig103719 1..294 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig103719.792.1 ID=prot_M-pyrifera_M_contig103719.792.1|Name=mRNA_M-pyrifera_M_contig103719.792.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MAVLTGTPALPKGKELKGGSRNVKLETLQSGYTPAKRRLEIATIAVFSLL
WLAAFWNTFTATGVENQLPITLFAFVVSLFVGDFLAGFVHWFCDTWGS
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