mRNA_M-pyrifera_M_contig103640.779.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103640.779.1
Unique NamemRNA_M-pyrifera_M_contig103640.779.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103640.779.1 vs. uniprot
Match: UPI001593D013 (toll/interleukin-1 receptor domain-containing protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001593D013)

HSP 1 Score: 352 bits (903), Expect = 7.420e-118
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 1
Query:    1 LAHYNESLKLVQAIDKGSVDAAKLLQESSYSNANLCSSYLLQGRDVQRAKMHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKMLASHIRIIDEIVASEPANRHWQEQQMRSYAGYAMRLAEHEEMVASGEYVELATTLAEELEAHDPTNEEWSKWLKSLSKMQH 543
            LAHYNESLKLVQAIDKGS DAAKLLQESSYSNANLCSSYLLQGRDVQRAKMHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKMLASHIRIIDEIVASEPANRHWQEQQMRSYAGYAMRLAEHEEMVASGEYVELATTLAEELEAHDPTNEEWSKWLKSLSKMQH
Sbjct:  332 LAHYNESLKLVQAIDKGSADAAKLLQESSYSNANLCSSYLLQGRDVQRAKMHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKMLASHIRIIDEIVASEPANRHWQEQQMRSYAGYAMRLAEHEEMVASGEYVELATTLAEELEAHDPTNEEWSKWLKSLSKMQH 512          
BLAST of mRNA_M-pyrifera_M_contig103640.779.1 vs. uniprot
Match: A0A0F9I7B9_9ZZZZ (Tyr recombinase domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9I7B9_9ZZZZ)

HSP 1 Score: 273 bits (699), Expect = 7.790e-88
Identity = 137/179 (76.54%), Postives = 156/179 (87.15%), Query Frame = 1
Query:    1 LAHYNESLKLVQAIDKGSVDAAKLLQESSYSNANLCSSYLLQGRDVQRAKMHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKMLASHIRIIDEIVASEPANRHWQEQQMRSYAGYAMRLAEHEEMVASGEYVELATTLAEELEAHDPTNEEWSKWLKSLSKM 537
            LAHY +SL+L Q  D GS +A+K LQE SY+NANLCSSYLLQG +V+RAKMHC+KAL QAE+LTK+RPESHTARLDLAIRYAWLAD DIAL N+E+GL ML +HI+IIDEIVA EPANRHWQEQQMRSYAGYAMRLAEHEE   SG+YV+LA TLAE LEAHDPTNEEWS+WL+   K+
Sbjct:   23 LAHYRQSLELAQRTDHGSANASKWLQELSYTNANLCSSYLLQGSNVRRAKMHCRKALIQAERLTKIRPESHTARLDLAIRYAWLADTDIALGNIEDGLNMLKTHIKIIDEIVALEPANRHWQEQQMRSYAGYAMRLAEHEEREISGKYVKLAMTLAEALEAHDPTNEEWSRWLEVEEKL 201          
BLAST of mRNA_M-pyrifera_M_contig103640.779.1 vs. uniprot
Match: UPI001BA5CC37 (Uncharacterized protein n=1 Tax=Leptolyngbya sp. 15MV TaxID=2819933 RepID=UPI001BA5CC37)

HSP 1 Score: 87.0 bits (214), Expect = 4.940e-17
Identity = 55/177 (31.07%), Postives = 87/177 (49.15%), Query Frame = 1
Query:    1 LAHYNESLKLVQAIDKGSVDAAKLLQESSYSNANLCSSYLLQGRDVQRAKMHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKMLASHIRIIDEIVASEPANRHWQEQQMRSYAGYAMRLAEHEEMVASGEYVELATTLAEELEAHDPTNEEWSKWLKSLS 531
            LA + E+  L+  I        + LQ+S+Y + NL SS+L  G +  RA+     A+ + + L  L P+    R D A +  WLAD +  L    EG +  A  + ++  ++A+EP NR W+EQ+M+        L        +  +   A T+AE L  HDP N EW ++ + LS
Sbjct:  164 LARHGEARALLDRIAPWGRTRPEWLQQSAYVHGNLASSHLATGGEPARAERDFAAAVAENDTLLALTPDDSMVRYDQAFQLQWLADVNYRLGKRTEGDRNAARSLALVAGLIAAEPENRVWREQEMQILIRQVELLEREGRGGEAAPFRRRAATVAERLVRHDPANAEWKRYAERLS 340          
BLAST of mRNA_M-pyrifera_M_contig103640.779.1 vs. uniprot
Match: UPI001FBB75AC (toll/interleukin-1 receptor domain-containing protein n=1 Tax=Novosphingobium sp. 2638 TaxID=2930389 RepID=UPI001FBB75AC)

HSP 1 Score: 61.2 bits (147), Expect = 9.650e-8
Identity = 40/148 (27.03%), Postives = 63/148 (42.57%), Query Frame = 1
Query:   94 NANLCSSYLLQGRDVQRAKMHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKMLASHIRIIDEIVASEPANRHWQEQQMRSYAGYAMRLAEHEEMVASGEYVELATTLAEELEAHDPTNEEWSKWLKSLSKM 537
            N N+C+  + +G         C++A+     L    PE+  A  DL     WLADA  A    +         +     +VA +P N  W+EQQM  +  +A  L E   +     ++  A  LA++L   DP N  WS +   + +M
Sbjct:  365 NGNICAVEVRRGLPGADTLADCERAVTLTRDLATELPENGGAAYDLVFHLIWLADAQSANGQADASYATRMQSLAASSALVARDPRNMLWREQQMEVFVRHAAWLGEVGHLKEEQAFLVRAGQLADDLVRRDPANATWSGYRDRIRRM 512          
BLAST of mRNA_M-pyrifera_M_contig103640.779.1 vs. uniprot
Match: UPI0014123CE7 (toll/interleukin-1 receptor domain-containing protein n=1 Tax=Caulobacter sp. SLTY TaxID=2683262 RepID=UPI0014123CE7)

HSP 1 Score: 59.7 bits (143), Expect = 3.280e-7
Identity = 40/153 (26.14%), Postives = 71/153 (46.41%), Query Frame = 1
Query:   61 AAKLLQESSYSNANLCSSYLLQGRDVQRAKMHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKMLASHIRIIDEIVASEPANRHWQEQQMRSYAGYAMRLAEHEEMVASGEYVELATTLAEELEAHDPTNEEWSKWL 519
            AA+ ++E +Y++ NLC+  L Q R+  RA   CQ A+        ++PE    +LDLA R+AWLA+  +A  +            +I+  ++   P +   ++     + G +    +   + A+ +Y+  A      L A DP+N  W   L
Sbjct:  350 AARSMRELAYADGNLCTLALQQEREFVRANRLCQAAITGIRAALAIQPEDRGLKLDLATRWAWLAETQVAEGDFHAAGDSRLEQKKILAALIGRTPEDATLRDNWGVCHRGLSFIAYQQGNLGAARKYLLEARVTFRSLAALDPSNTRWRDQL 502          
BLAST of mRNA_M-pyrifera_M_contig103640.779.1 vs. uniprot
Match: A0A437LYZ5_9SPHN (Toll/interleukin-1 receptor domain-containing protein n=2 Tax=Sphingomonas crocodyli TaxID=1979270 RepID=A0A437LYZ5_9SPHN)

HSP 1 Score: 59.3 bits (142), Expect = 4.490e-7
Identity = 35/116 (30.17%), Postives = 55/116 (47.41%), Query Frame = 1
Query:    7 HYNESLKLVQAIDKGSVDAAKLLQESSYSNANLCSSYLLQGRDVQRAKMHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKMLASHIRIIDEIVASEPAN 354
            H+ + L+L   +     +     +E  Y+  NLCS  L++  D       C+ AL+    +    P     +LDLA RYAWLADA  A    ++ L        I+D++VA++P N
Sbjct:  357 HFEQYLQLALQLTTIDPNNVAYQREVGYAEGNLCSLNLVRSADATATLRSCRAALETMRDVAAASPRDLGVQLDLANRYAWLADALKAGGRDDQALDQRRRQAAILDKLVAADPKN 472          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103640.779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001593D0137.420e-11899.45toll/interleukin-1 receptor domain-containing prot... [more]
A0A0F9I7B9_9ZZZZ7.790e-8876.54Tyr recombinase domain-containing protein (Fragmen... [more]
UPI001BA5CC374.940e-1731.07Uncharacterized protein n=1 Tax=Leptolyngbya sp. 1... [more]
UPI001FBB75AC9.650e-827.03toll/interleukin-1 receptor domain-containing prot... [more]
UPI0014123CE73.280e-726.14toll/interleukin-1 receptor domain-containing prot... [more]
A0A437LYZ5_9SPHN4.490e-730.17Toll/interleukin-1 receptor domain-containing prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103640contigM-pyrifera_M_contig103640:105..650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.5
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog715226.ABI_40010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIR domain
EggNOG OGs1N06S@1224,2KGCY@204458,2TQVV@28211,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelCaulobacterales
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size546
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.650155-CDS-M-pyrifera_M_contig103640:104..6501622815542.650155-CDS-M-pyrifera_M_contig103640:104..650Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103640 105..650 -
1692277456.375694-CDS-M-pyrifera_M_contig103640:104..6501692277456.375694-CDS-M-pyrifera_M_contig103640:104..650Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103640 105..650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103640.779.1prot_M-pyrifera_M_contig103640.779.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103640 105..650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103640.779.1

>prot_M-pyrifera_M_contig103640.779.1 ID=prot_M-pyrifera_M_contig103640.779.1|Name=mRNA_M-pyrifera_M_contig103640.779.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
LAHYNESLKLVQAIDKGSVDAAKLLQESSYSNANLCSSYLLQGRDVQRAK
MHCQKALDQAEQLTKLRPESHTARLDLAIRYAWLADADIALDNVEEGLKM
LASHIRIIDEIVASEPANRHWQEQQMRSYAGYAMRLAEHEEMVASGEYVE
LATTLAEELEAHDPTNEEWSKWLKSLSKMQH*
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mRNA from alignment at M-pyrifera_M_contig103640:105..650-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103640.779.1 ID=mRNA_M-pyrifera_M_contig103640.779.1|Name=mRNA_M-pyrifera_M_contig103640.779.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig103640:105..650- (Macrocystis pyrifera P11B4 male)
CTGGCGCATTACAATGAAAGTCTGAAACTCGTTCAAGCAATCGATAAGGG ATCGGTTGATGCCGCGAAATTGCTTCAGGAATCGTCCTATTCGAATGCCA ATTTATGCTCTTCCTATTTGTTGCAAGGTCGAGATGTGCAACGGGCAAAG ATGCATTGTCAAAAAGCACTGGACCAGGCGGAACAACTGACGAAGCTTCG GCCCGAAAGCCATACTGCGAGACTTGATCTTGCGATCCGATATGCCTGGC TTGCCGATGCGGATATCGCGCTGGACAATGTTGAGGAAGGGTTGAAAATG CTTGCAAGCCATATCAGGATAATCGACGAAATCGTGGCCTCGGAGCCGGC AAACCGGCATTGGCAGGAGCAACAGATGCGCTCCTACGCAGGATATGCAA TGCGTCTCGCCGAGCATGAAGAAATGGTTGCCTCGGGCGAATATGTTGAG CTTGCGACAACTCTGGCGGAAGAGCTGGAGGCGCACGATCCTACCAACGA AGAATGGTCCAAATGGCTGAAAAGCCTTAGCAAGATGCAACATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103640:105..650-

>mRNA_M-pyrifera_M_contig103640.779.1 ID=mRNA_M-pyrifera_M_contig103640.779.1|Name=mRNA_M-pyrifera_M_contig103640.779.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig103640:105..650- (Macrocystis pyrifera P11B4 male)
CTGGCGCATTACAATGAAAGTCTGAAACTCGTTCAAGCAATCGATAAGGG
ATCGGTTGATGCCGCGAAATTGCTTCAGGAATCGTCCTATTCGAATGCCA
ATTTATGCTCTTCCTATTTGTTGCAAGGTCGAGATGTGCAACGGGCAAAG
ATGCATTGTCAAAAAGCACTGGACCAGGCGGAACAACTGACGAAGCTTCG
GCCCGAAAGCCATACTGCGAGACTTGATCTTGCGATCCGATATGCCTGGC
TTGCCGATGCGGATATCGCGCTGGACAATGTTGAGGAAGGGTTGAAAATG
CTTGCAAGCCATATCAGGATAATCGACGAAATCGTGGCCTCGGAGCCGGC
AAACCGGCATTGGCAGGAGCAACAGATGCGCTCCTACGCAGGATATGCAA
TGCGTCTCGCCGAGCATGAAGAAATGGTTGCCTCGGGCGAATATGTTGAG
CTTGCGACAACTCTGGCGGAAGAGCTGGAGGCGCACGATCCTACCAACGA
AGAATGGTCCAAATGGCTGAAAAGCCTTAGCAAGATGCAACATTAGCTGG
CGCATTACAATGAAAGTCTGAAACTCGTTCAAGCAATCGATAAGGGATCG
GTTGATGCCGCGAAATTGCTTCAGGAATCGTCCTATTCGAATGCCAATTT
ATGCTCTTCCTATTTGTTGCAAGGTCGAGATGTGCAACGGGCAAAGATGC
ATTGTCAAAAAGCACTGGACCAGGCGGAACAACTGACGAAGCTTCGGCCC
GAAAGCCATACTGCGAGACTTGATCTTGCGATCCGATATGCCTGGCTTGC
CGATGCGGATATCGCGCTGGACAATGTTGAGGAAGGGTTGAAAATGCTTG
CAAGCCATATCAGGATAATCGACGAAATCGTGGCCTCGGAGCCGGCAAAC
CGGCATTGGCAGGAGCAACAGATGCGCTCCTACGCAGGATATGCAATGCG
TCTCGCCGAGCATGAAGAAATGGTTGCCTCGGGCGAATATGTTGAGCTTG
CGACAACTCTGGCGGAAGAGCTGGAGGCGCACGATCCTACCAACGAAGAA
TGGTCCAAATGGCTGAAAAGCCTTAGCAAGATGCAACATTAG
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