mRNA_M-pyrifera_M_contig103619.772.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103619.772.1
Unique NamemRNA_M-pyrifera_M_contig103619.772.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A7S4PDB0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PDB0_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 2.850e-14
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   46 LWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWEDANGAFYIRIIYNGEVLSGDFP-TGTCDTATGLCPYDDF-RSFAEARFPVD 300
            L+SGHD+SV P+L+ LG++ G W P A+Q+V+E+WE  NG  YI +IYNG  L+   P  G  D    LC +DDF  S  E R  +D
Sbjct:  335 LFSGHDSSVWPLLDTLGIYDGHWPPLASQVVYEMWEAKNGTNYIEVIYNGRDLTQYIPHCGGGD----LCLWDDFLHSTREIRVGLD 417          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A0G4H6F4_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H6F4_VITBC)

HSP 1 Score: 76.3 bits (186), Expect = 6.010e-14
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   40 LTLWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWE---DANGAFYIRIIYNGEVLSGDFPTGTCDTATGLCPYDDFRSFAEARFPVDGA-CGPVE 321
            + LWSGHDT+++P+L A+G W G W  YA+ ++ E++    D+  A Y R+IYNGEV++       CD    LC YD F   A   F  DG  C P E
Sbjct:  431 IALWSGHDTTLMPVLAAMGAWDGKWPSYASIIILELYTVGADSREA-YFRLIYNGEVITSMIKG--CDPQQDLCSYDHFD--AVTSFAKDGPDCDPTE 523          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A087SS54_AUXPR (Lysophosphatidic acid phosphatase type 6 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SS54_AUXPR)

HSP 1 Score: 73.9 bits (180), Expect = 3.610e-13
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 1
Query:    1 RMDNVVTSNATDTLTLWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWEDANGAFYIRIIYNGEVLSGDFPTGTCDTATGLCPYDDFRSFAEARFPVDGA 306
            RM+  V   A   + L+SGHD++++P+L ALG     W  Y + LVFE W   +G  Y++++YNGE L      GT +     CP  DFR    A   +D A
Sbjct:  320 RMEETVAGTARHRMLLYSGHDSTLMPLLVALGKEVETWPAYMSNLVFENWRRGDGQRYVKVLYNGEALGLQELCGTPE-----CPLQDFRRAVIAPLQLDSA 416          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: H3AKM0_LATCH (Uncharacterized protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AKM0_LATCH)

HSP 1 Score: 72.0 bits (175), Expect = 1.750e-12
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 RMDNVVTSNATDTLTLWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWEDA-NGAFYIRIIYNGEVLSGDFPTGTC-----DTATGLCPYDDFRSFAE 282
            RM +V+     +   L+S HD +V P+LNALGL    +  +AA+L+FE+W+   N  ++IRI+YNG+ ++  F T  C      +   LCP+++F SF +
Sbjct:  361 RMHHVLRGKKEEVFALYSAHDVTVSPVLNALGLLEARFPRFAARLIFELWQGPKNKNYFIRILYNGDDVT--FQTSFCRKHNRHSKWPLCPFENFASFVQ 458          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A1Y1XT32_9FUNG (Phosphoglycerate mutase-like protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XT32_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 3.180e-12
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   46 LWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWEDAN-GAFYIRIIYNGEVLSGDFPTGTCDTATGLCPYDDFRSFAEARFPVD 300
            ++SGHDT+V P+L  L      W PYA+ L+FE+W+D + GA ++R++YNG+VL        CD    LCP + F S  +   P+D
Sbjct:  352 IFSGHDTTVQPILGVLRADDFRWPPYASSLIFELWQDKHTGAAFLRVLYNGDVLRSP----VCDF--NLCPLETFLSQIDHYIPLD 431          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A7R9V1D7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V1D7_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.330e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   46 LWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWEDANGAFYIRIIYN 192
            L+SGHD++V+P+L ALGL    W PY + LVFE+WEDA+G   +R++YN
Sbjct:   36 LYSGHDSTVMPLLLALGLDLTHWPPYLSNLVFELWEDASGQHVVRVMYN 84          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A1Y2GLM2_9FUNG (Histidine phosphatase superfamily n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GLM2_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 1.540e-11
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   40 LTLWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWEDANGAFYIRIIYNGEVLSGDFPTGTCDTATGLCPYDDFRSFAE 282
            L+ +SGHDT++ P+L         W PYA+ ++ E+W+ + G  ++R++YNGEVL  D  +  CD     CP+D F  + +
Sbjct:  374 LSFYSGHDTTIQPLLGMFDAEDQQWPPYASNIILELWKSSPGEHFVRVLYNGEVL--DVKSNWCDLE--WCPFDTFIKYLD 450          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A1S3J9P8_LINUN (2-phosphoxylose phosphatase 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J9P8_LINUN)

HSP 1 Score: 67.8 bits (164), Expect = 5.450e-11
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   46 LWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWED-ANGAFYIRIIYNGEVLSGDFPTGTCDTATGLCPYDDFRSFAE 282
            L+SGHDT++ P+L ALGL  G W P+A++L FE++   AN   Y+R++Y G+ ++            G+CP  +F  FA+
Sbjct:  406 LFSGHDTTISPLLTALGLHDGIWPPFASRLTFELYRSVANERLYMRVVYLGKDVTRKLRFCGGSLIDGMCPLKNFLKFAK 485          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A8J5X3I0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X3I0_DIALT)

HSP 1 Score: 67.4 bits (163), Expect = 7.490e-11
Identity = 39/115 (33.91%), Postives = 55/115 (47.83%), Query Frame = 1
Query:   46 LWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWED-------ANGAF------------YIRIIYNGEVLSGDFPTGTCDTATGLCPYDDFRS-FAEARFPVD---GACGPVE 321
            LWS HDT+V+P++ ALG+  G WAPYAA  VFE+W         A+GA              +R++Y G  ++   P   C  A  LC Y+   +  A    P+D     C P +
Sbjct:  339 LWSAHDTTVMPLMAALGVHDGRWAPYAAHFVFEVWRQSGAPPARAHGATPAPGVAPATKGARVRLLYMGRAITARLPG--CADAGALCAYEQLEAALAPWSLPLDEWLAKCEPTQ 451          
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Match: A0A1X7TVT7_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TVT7_AMPQE)

HSP 1 Score: 67.0 bits (162), Expect = 9.760e-11
Identity = 29/85 (34.12%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   46 LWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWEDANGAFYIRIIYNGEVLSGDFPTGTCDTATGLCPYDDFRSFAEARFPVD 300
            L+SGHDT++I +L ALG+  G W PY++ ++FE++  +     +R++YNG++ +  F  G       LC Y+ F ++     P D
Sbjct:  335 LYSGHDTTLIQLLVALGIDEGIWPPYSSMMLFELYSTSTAPAAVRVLYNGKIKTLPFCNGQ-----ELCSYETFSNYLSTVTPPD 414          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103619.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4PDB0_9EUKA2.850e-1447.13Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A0G4H6F4_VITBC6.010e-1441.84Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A087SS54_AUXPR3.610e-1337.25Lysophosphatidic acid phosphatase type 6 n=2 Tax=A... [more]
H3AKM0_LATCH1.750e-1237.00Uncharacterized protein n=2 Tax=Latimeria chalumna... [more]
A0A1Y1XT32_9FUNG3.180e-1240.70Phosphoglycerate mutase-like protein n=1 Tax=Basid... [more]
A0A7R9V1D7_9CHLO1.330e-1155.10Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A1Y2GLM2_9FUNG1.540e-1135.80Histidine phosphatase superfamily n=1 Tax=Lobospor... [more]
A0A1S3J9P8_LINUN5.450e-1138.752-phosphoxylose phosphatase 1 n=1 Tax=Lingula ungu... [more]
A0A8J5X3I0_DIALT7.490e-1133.91Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A1X7TVT7_AMPQE9.760e-1134.12Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103619contigM-pyrifera_M_contig103619:331..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.6
Seed ortholog evalue7.6e-12
Seed eggNOG ortholog7739.XP_002610861.1
Preferred namePXYLP1
KEGG koko:K15116,ko:K21403
KEGG TC2.A.29.10.4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010559,GO:0010560,GO:0010604,GO:0010908,GO:0010909,GO:0012505,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0030166,GO:0030203,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0034645,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050650,GO:0050654,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0052642,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902730,GO:1903018,GO:1903020,GO:2000112
EggNOG free text desc.regulation of heparan sulfate proteoglycan biosynthetic process
EggNOG OGs38VK3@33154,3BA49@33208,3CRJC@33213,481ES@7711,KOG3672@1,KOG3672@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000
Exons1
Model size321
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.326925-CDS-M-pyrifera_M_contig103619:330..6481622815542.326925-CDS-M-pyrifera_M_contig103619:330..648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103619 331..648 -
1692277456.2662904-CDS-M-pyrifera_M_contig103619:330..6481692277456.2662904-CDS-M-pyrifera_M_contig103619:330..648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103619 331..648 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.3377233-UTR-M-pyrifera_M_contig103619:648..6511622815542.3377233-UTR-M-pyrifera_M_contig103619:648..651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103619 649..651 -
1692277456.276526-UTR-M-pyrifera_M_contig103619:648..6511692277456.276526-UTR-M-pyrifera_M_contig103619:648..651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103619 649..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103619.772.1prot_M-pyrifera_M_contig103619.772.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103619 331..648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103619.772.1

>prot_M-pyrifera_M_contig103619.772.1 ID=prot_M-pyrifera_M_contig103619.772.1|Name=mRNA_M-pyrifera_M_contig103619.772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MDNVVTSNATDTLTLWSGHDTSVIPMLNALGLWRGAWAPYAAQLVFEIWE
DANGAFYIRIIYNGEVLSGDFPTGTCDTATGLCPYDDFRSFAEARFPVDG
ACGPVE
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mRNA from alignment at M-pyrifera_M_contig103619:331..651-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103619.772.1 ID=mRNA_M-pyrifera_M_contig103619.772.1|Name=mRNA_M-pyrifera_M_contig103619.772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig103619:331..651- (Macrocystis pyrifera P11B4 male)
AGGATGGACAATGTAGTCACATCCAACGCTACGGACACTCTTACTCTTTG GAGTGGCCATGATACTTCTGTGATTCCTATGTTGAACGCGCTTGGGCTTT GGCGAGGTGCTTGGGCACCGTATGCAGCCCAGCTTGTGTTCGAGATTTGG GAAGACGCCAACGGAGCGTTCTACATTCGAATCATCTACAACGGAGAGGT CCTCAGTGGCGACTTTCCCACAGGCACGTGCGATACTGCAACGGGCCTCT GCCCCTACGATGACTTCCGCTCTTTTGCCGAGGCCAGGTTTCCTGTCGAT GGAGCGTGTGGGCCAGTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103619:331..651-

>mRNA_M-pyrifera_M_contig103619.772.1 ID=mRNA_M-pyrifera_M_contig103619.772.1|Name=mRNA_M-pyrifera_M_contig103619.772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig103619:331..651- (Macrocystis pyrifera P11B4 male)
ATGGACAATGTAGTCACATCCAACGCTACGGACACTCTTACTCTTTGGAG
TGGCCATGATACTTCTGTGATTCCTATGTTGAACGCGCTTGGGCTTTGGC
GAGGTGCTTGGGCACCGTATGCAGCCCAGCTTGTGTTCGAGATTTGGGAA
GACGCCAACGGAGCGTTCTACATTCGAATCATCTACAACGGAGAGGTCCT
CAGTGGCGACTTTCCCACAGGCACGTGCGATACTGCAACGGGCCTCTGCC
CCTACGATGACTTCCGCTCTTTTGCCGAGGCCAGGTTTCCTGTCGATGGA
GCGTGTGGGCCAGTGGAGATGGACAATGTAGTCACATCCAACGCTACGGA
CACTCTTACTCTTTGGAGTGGCCATGATACTTCTGTGATTCCTATGTTGA
ACGCGCTTGGGCTTTGGCGAGGTGCTTGGGCACCGTATGCAGCCCAGCTT
GTGTTCGAGATTTGGGAAGACGCCAACGGAGCGTTCTACATTCGAATCAT
CTACAACGGAGAGGTCCTCAGTGGCGACTTTCCCACAGGCACGTGCGATA
CTGCAACGGGCCTCTGCCCCTACGATGACTTCCGCTCTTTTGCCGAGGCC
AGGTTTCCTGTCGATGGAGCGTGTGGGCCAGTGGAG
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