mRNA_M-pyrifera_M_contig103605.765.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103605.765.1
Unique NamemRNA_M-pyrifera_M_contig103605.765.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103605.765.1 vs. uniprot
Match: A0A7S2XXS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXS1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.760e-10
Identity = 29/120 (24.17%), Postives = 61/120 (50.83%), Query Frame = 1 
Query:   82 DLLRYFQFSYKQSSGYKGVGHFKLSGADDGGEEVEFCVACDPEEGVQCHYGEPRDSERPSFTVVMTVNDFLRVYSGQVCSSELMRMGVSGRIWVNGFAIRAVQQFATSFCYESGTWEAFY 441
            DL+++F F++  +S ++G   F         +     +A    +   C + +    +  S+ +     +FL +YSGQ  ++E++RMG++G++ +  F +  ++QFA  F +    W+ FY
Sbjct:   19 DLMQFFCFAWNVNSSFRGTVQFSFPDTISSYDGKPLQLAVQVSDSGTCVFRDTPPDKEVSYEIKAPAREFLHIYSGQASATEMVRMGLTGKLQMRPFNVMQMRQFANCFDFSQEKWDEFY 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103605.765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2XXS1_9STRA1.760e-1024.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103605contigM-pyrifera_M_contig103605:3..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog4792.ETI50053
Hectar predicted targeting categoryother localisation
EggNOG OGs29H1B@1,2RQ7Z@2759,3Q8N3@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.9470303-CDS-M-pyrifera_M_contig103605:2..4881622815541.9470303-CDS-M-pyrifera_M_contig103605:2..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103605 3..488 -
1692277456.092985-CDS-M-pyrifera_M_contig103605:2..4881692277456.092985-CDS-M-pyrifera_M_contig103605:2..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103605 3..488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.9589489-UTR-M-pyrifera_M_contig103605:488..5031622815541.9589489-UTR-M-pyrifera_M_contig103605:488..503Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103605 489..503 -
1692277456.105996-UTR-M-pyrifera_M_contig103605:488..5031692277456.105996-UTR-M-pyrifera_M_contig103605:488..503Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103605 489..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103605.765.1prot_M-pyrifera_M_contig103605.765.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103605 3..488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103605.765.1

>prot_M-pyrifera_M_contig103605.765.1 ID=prot_M-pyrifera_M_contig103605.765.1|Name=mRNA_M-pyrifera_M_contig103605.765.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
MDECATGPGEAIEEKTDAAAIDDLLRYFQFSYKQSSGYKGVGHFKLSGAD
DGGEEVEFCVACDPEEGVQCHYGEPRDSERPSFTVVMTVNDFLRVYSGQV
CSSELMRMGVSGRIWVNGFAIRAVQQFATSFCYESGTWEAFYEQQAAAGD
AEERKTATAPTP
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mRNA from alignment at M-pyrifera_M_contig103605:3..503-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103605.765.1 ID=mRNA_M-pyrifera_M_contig103605.765.1|Name=mRNA_M-pyrifera_M_contig103605.765.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig103605:3..503- (Macrocystis pyrifera P11B4 male)
AACGACAAGGAAGTAATGGATGAATGTGCTACGGGGCCGGGAGAAGCGAT
TGAGGAGAAAACGGACGCGGCAGCCATCGACGACTTGCTGCGCTACTTCC
AATTCTCGTACAAGCAGAGTAGCGGGTACAAGGGCGTCGGACACTTCAAG
CTGAGCGGTGCAGACGATGGCGGAGAGGAAGTAGAGTTCTGTGTGGCGTG
CGACCCGGAGGAGGGCGTGCAGTGCCACTACGGAGAGCCCCGCGACAGCG
AGCGGCCGTCTTTCACGGTGGTGATGACCGTGAATGACTTCCTTCGCGTC
TACAGCGGACAGGTCTGCAGCAGCGAGCTGATGCGAATGGGCGTCAGCGG
CCGTATCTGGGTGAACGGTTTCGCCATCCGCGCAGTACAGCAGTTTGCCA
CCTCCTTCTGCTACGAATCCGGCACATGGGAAGCGTTCTACGAGCAGCAG
GCTGCTGCAGGCGACGCAGAGGAGCGCAAGACCGCGACTGCCCCCACCCC
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103605:3..503-

>mRNA_M-pyrifera_M_contig103605.765.1 ID=mRNA_M-pyrifera_M_contig103605.765.1|Name=mRNA_M-pyrifera_M_contig103605.765.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig103605:3..503- (Macrocystis pyrifera P11B4 male)
ATGGATGAATGTGCTACGGGGCCGGGAGAAGCGATTGAGGAGAAAACGGA
CGCGGCAGCCATCGACGACTTGCTGCGCTACTTCCAATTCTCGTACAAGC
AGAGTAGCGGGTACAAGGGCGTCGGACACTTCAAGCTGAGCGGTGCAGAC
GATGGCGGAGAGGAAGTAGAGTTCTGTGTGGCGTGCGACCCGGAGGAGGG
CGTGCAGTGCCACTACGGAGAGCCCCGCGACAGCGAGCGGCCGTCTTTCA
CGGTGGTGATGACCGTGAATGACTTCCTTCGCGTCTACAGCGGACAGGTC
TGCAGCAGCGAGCTGATGCGAATGGGCGTCAGCGGCCGTATCTGGGTGAA
CGGTTTCGCCATCCGCGCAGTACAGCAGTTTGCCACCTCCTTCTGCTACG
AATCCGGCACATGGGAAGCGTTCTACGAGCAGCAGGCTGCTGCAGGCGAC
GCAGAGGAGCGCAAGACCGCGACTGCCCCCACCCCAATGGATGAATGTGC
TACGGGGCCGGGAGAAGCGATTGAGGAGAAAACGGACGCGGCAGCCATCG
ACGACTTGCTGCGCTACTTCCAATTCTCGTACAAGCAGAGTAGCGGGTAC
AAGGGCGTCGGACACTTCAAGCTGAGCGGTGCAGACGATGGCGGAGAGGA
AGTAGAGTTCTGTGTGGCGTGCGACCCGGAGGAGGGCGTGCAGTGCCACT
ACGGAGAGCCCCGCGACAGCGAGCGGCCGTCTTTCACGGTGGTGATGACC
GTGAATGACTTCCTTCGCGTCTACAGCGGACAGGTCTGCAGCAGCGAGCT
GATGCGAATGGGCGTCAGCGGCCGTATCTGGGTGAACGGTTTCGCCATCC
GCGCAGTACAGCAGTTTGCCACCTCCTTCTGCTACGAATCCGGCACATGG
GAAGCGTTCTACGAGCAGCAGGCTGCTGCAGGCGACGCAGAGGAGCGCAA
GACCGCGACTGCCCCCACCCCA
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