mRNA_M-pyrifera_M_contig103424.731.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103424.731.1
Unique NamemRNA_M-pyrifera_M_contig103424.731.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: W7TBU8_9STRA (Stress-induced protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBU8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.400e-16
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   31 EELKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLRACSAAEAMEDWGL 297
            E  K   NA F +G Y  AL +YT+G+ + PD HVLYSNR+  FL   KE +  KAL DAE  + + P WP+ Y R  +A  A+  + +
Sbjct:   46 ERYKDEGNAAFKEGRYKEALALYTQGVAIDPDNHVLYSNRSAAFL---KESERGKALKDAERLMEIKPDWPKSYSRKGAAQHALTRYAI 131          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: A0A4D9CT36_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT36_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.490e-15
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   31 EELKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLRACSAAEAMEDWGL 297
            E  K   NA F +G Y  AL +YT+G+ + PD HVLYSNR+  FL   KE +  KAL DAE  + + P WP+ Y R  +A  A+  + L
Sbjct:   46 ERYKDEGNAAFKEGRYKEALALYTQGVAIDPDNHVLYSNRSAAFL---KESERGKALKDAERLMEIKPDWPKSYSRKGAAQHALTRYAL 131          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: A0A3S5AXP7_9PLAT (Stress-induced-phosphoprotein 1 n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5AXP7_9PLAT)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-13
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   37 LKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLRACSAAEAMEDW 291
            LK   N    +G+Y SA+  Y++GI   P+ HVLYSNR++ +    K GD +KALSDA+E VRL  +W +G+ R  SA EA+  +
Sbjct:    5 LKDKGNLALKEGDYKSAVGFYSQGINADPENHVLYSNRSVAYF---KSGDYSKALSDADECVRLNVNWSKGHSRRASALEALSRY 86          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: A0A388KX01_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KX01_CHABU)

HSP 1 Score: 70.1 bits (170), Expect = 4.750e-12
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   37 LKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLRACSAAEAMEDW 291
            LK   NALF  G +  A  +YT+ I   P+ H LYSNR+  FL+  K     +AL DAE+ +RLAP+W +GY R   A EAM+ +
Sbjct:   38 LKEQGNALFKAGSFLRAAVVYTQAIKEDPNNHTLYSNRSAAFLQLSK---VTQALKDAEQTIRLAPTWEKGYFRKGCALEAMKKF 119          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: A0A8C8R7W6_9SAUR (RING-type E3 ubiquitin transferase n=2 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8R7W6_9SAUR)

HSP 1 Score: 70.5 bits (171), Expect = 4.970e-12
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   16 CLLGMEELKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLRACSAAEAME--DWGL 297
            C+   E +K   N  FS+  +D A++ Y+K I   P+ H+LYSNRAL FLR G+     +AL D + A  L P+WP+G+   C A   M   +W L
Sbjct:  229 CIKKSEFMKDRGNCEFSQKNFDFAINSYSKAIEFCPENHLLYSNRALCFLRTGQY---ERALVDGKRATILKPNWPKGHHHFCEALSLMGKLEWAL 321          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: A0A2S5BHQ6_9BASI (Thioredoxin n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BHQ6_9BASI)

HSP 1 Score: 69.7 bits (169), Expect = 5.200e-12
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   31 EELKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLR 258
            E LK   N  F  GE++SA D Y++ I L P++ VL  NRA   LR     D   AL+DA+EAVR+AP+W +G++R
Sbjct:  183 EALKEEGNTFFKGGEFESARDKYSEAISLAPESFVLLGNRAFAILRSASP-DFEAALADADEAVRIAPTWAKGHVR 257          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: A0A6P7JPA1_9TELE (RING-type E3 ubiquitin transferase n=3 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7JPA1_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 9.230e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   10 SWCLLGMEELKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLRACSA 270
            S+ +   EE+K   N  F K +Y+ A+  Y+K I  YPD H++YSNRAL ++R  K     KA+ D + AV + P W +G+ R C A
Sbjct:  201 SYSIEKCEEMKKKGNENFQKQQYEDAVIFYSKAITFYPDNHIIYSNRALCYIRCKKY---LKAVCDGKRAVLIKPHWAKGHYRYCEA 284          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: A0A7S1M609_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1M609_ALECA)

HSP 1 Score: 68.9 bits (167), Expect = 1.590e-11
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   37 LKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRG-KEGDAA--------KALSDAEEAVRLAPSWPRGYLRACSAAEAMEDW 291
            LK   NA F  G+YD+A+D YT+ + L    H+ +SNR+  +L+ G K G A         KAL+DA + V ++P+W +GY R  S  + ++ W
Sbjct:   46 LKNDGNAAFKAGDYDNAIDAYTRALELDQTQHLCFSNRSAAYLKLGCKAGTAEASKSDFLDKALADANKCVEISPNWAKGYSRQASVLQELKRW 139          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: A0A7S0ENX4_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ENX4_9CRYP)

HSP 1 Score: 67.8 bits (164), Expect = 3.110e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   31 EELKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLRACSA 270
            E+ K   N  F KGE+D AL+ Y++ +    + HV+ SNR+  F + G+     KAL DAEEA+RLAPSWP+GY R  +A
Sbjct:    7 EDDKTKGNEAFKKGEFDRALEHYSRALET-AENHVIRSNRSACFSQLGQH---EKALVDAEEAIRLAPSWPKGYSRKAAA 82          
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Match: UPI0010A8E086 (E3 ubiquitin-protein ligase TTC3 isoform X1 n=3 Tax=Monotremata TaxID=9255 RepID=UPI0010A8E086)

HSP 1 Score: 68.2 bits (165), Expect = 3.220e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   16 CLLGMEELKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGKEGDAAKALSDAEEAVRLAPSWPRGYLRACSAAEAMED 288
            C    E +K   N  FS+ +YD A+  YT+ I   P+ H+LYSNRAL FLR G+     +AL+D + A  L  +WP+G+ R C A   M +
Sbjct:  200 CTRKGEMMKERGNEEFSQKKYDLAILFYTRAINFCPENHLLYSNRALCFLRIGQY---KRALADGKRATILKHNWPKGHYRFCDALSMMGE 287          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103424.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TBU8_9STRA1.400e-1642.70Stress-induced protein n=1 Tax=Nannochloropsis gad... [more]
A0A4D9CT36_9STRA2.490e-1543.82Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A3S5AXP7_9PLAT1.100e-1344.71Stress-induced-phosphoprotein 1 n=1 Tax=Protopolys... [more]
A0A388KX01_CHABU4.750e-1244.71Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A8C8R7W6_9SAUR4.970e-1239.58RING-type E3 ubiquitin transferase n=2 Tax=Pelusio... [more]
A0A2S5BHQ6_9BASI5.200e-1246.05Thioredoxin n=1 Tax=Rhodotorula taiwanensis TaxID=... [more]
A0A6P7JPA1_9TELE9.230e-1240.23RING-type E3 ubiquitin transferase n=3 Tax=Paramba... [more]
A0A7S1M609_ALECA1.590e-1137.23Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S0ENX4_9CRYP3.110e-1146.25Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
UPI0010A8E0863.220e-1140.66E3 ubiquitin-protein ligase TTC3 isoform X1 n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103424contigM-pyrifera_M_contig103424:16..312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.0
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog176946.XP_007423399.1
Preferred nameTTC3
KEGG koko:K15712
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010721,GO:0010769,GO:0010771,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030163,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051603,GO:0051960,GO:0051961,GO:0060284,GO:0065007,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:2000026
EggNOG free text desc.protein K48-linked ubiquitination
EggNOG OGs39J6R@33154,3BFMY@33208,3CVS1@33213,487WG@7711,4979K@7742,KOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size297
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.885042-UTR-M-pyrifera_M_contig103424:15..421622815539.885042-UTR-M-pyrifera_M_contig103424:15..42Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103424 16..42 +
1692277455.2172344-UTR-M-pyrifera_M_contig103424:15..421692277455.2172344-UTR-M-pyrifera_M_contig103424:15..42Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103424 16..42 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.8981993-CDS-M-pyrifera_M_contig103424:42..3121622815539.8981993-CDS-M-pyrifera_M_contig103424:42..312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103424 43..312 +
1692277455.2299902-CDS-M-pyrifera_M_contig103424:42..3121692277455.2299902-CDS-M-pyrifera_M_contig103424:42..312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103424 43..312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103424.731.1prot_M-pyrifera_M_contig103424.731.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103424 43..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103424.731.1

>prot_M-pyrifera_M_contig103424.731.1 ID=prot_M-pyrifera_M_contig103424.731.1|Name=mRNA_M-pyrifera_M_contig103424.731.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MEELKGAANALFSKGEYDSALDMYTKGIGLYPDAHVLYSNRALVFLRRGK
EGDAAKALSDAEEAVRLAPSWPRGYLRACSAAEAMEDWGL
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mRNA from alignment at M-pyrifera_M_contig103424:16..312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103424.731.1 ID=mRNA_M-pyrifera_M_contig103424.731.1|Name=mRNA_M-pyrifera_M_contig103424.731.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig103424:16..312+ (Macrocystis pyrifera P11B4 male)
TACTGCAGAAGTTGGTGTTTGTTGGGGATGGAGGAATTAAAAGGGGCTGC GAATGCCCTGTTTTCAAAAGGAGAGTATGATTCTGCGTTAGACATGTATA CCAAAGGAATAGGGTTGTATCCTGATGCGCATGTTTTGTATTCGAACCGT GCACTGGTGTTTTTACGACGTGGCAAAGAAGGAGACGCTGCAAAGGCCTT ATCTGATGCAGAAGAAGCAGTTCGGTTAGCACCATCATGGCCACGTGGGT ATTTACGTGCCTGTAGTGCAGCAGAAGCAATGGAAGATTGGGGGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103424:16..312+

>mRNA_M-pyrifera_M_contig103424.731.1 ID=mRNA_M-pyrifera_M_contig103424.731.1|Name=mRNA_M-pyrifera_M_contig103424.731.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig103424:16..312+ (Macrocystis pyrifera P11B4 male)
ATGGAGGAATTAAAAGGGGCTGCGAATGCCCTGTTTTCAAAAGGAGAGTA
TGATTCTGCGTTAGACATGTATACCAAAGGAATAGGGTTGTATCCTGATG
CGCATGTTTTGTATTCGAACCGTGCACTGGTGTTTTTACGACGTGGCAAA
GAAGGAGACGCTGCAAAGGCCTTATCTGATGCAGAAGAAGCAGTTCGGTT
AGCACCATCATGGCCACGTGGGTATTTACGTGCCTGTAGTGCAGCAGAAG
CAATGGAAGATTGGGGGTTGATGGAGGAATTAAAAGGGGCTGCGAATGCC
CTGTTTTCAAAAGGAGAGTATGATTCTGCGTTAGACATGTATACCAAAGG
AATAGGGTTGTATCCTGATGCGCATGTTTTGTATTCGAACCGTGCACTGG
TGTTTTTACGACGTGGCAAAGAAGGAGACGCTGCAAAGGCCTTATCTGAT
GCAGAAGAAGCAGTTCGGTTAGCACCATCATGGCCACGTGGGTATTTACG
TGCCTGTAGTGCAGCAGAAGCAATGGAAGATTGGGGGTTG
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