mRNA_M-pyrifera_M_contig10342.729.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10342.729.1
Unique NamemRNA_M-pyrifera_M_contig10342.729.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10342.729.1 vs. uniprot
Match: D7FNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG7_ECTSI)

HSP 1 Score: 632 bits (1629), Expect = 1.320e-217
Identity = 376/633 (59.40%), Postives = 450/633 (71.09%), Query Frame = 1
Query:    1 QAMLEDFLRSTESNEVMGDLSEGLEARREDLVCPDPSRCFPKTAEDRAALQSGSVVVKGFRAKLPPQAVTELVALSDELNINEVVCVELWSQVNEPWQRRALEKRLAEPAGSLSDDLPLAVRKLFYLERHSLLLFEAGLFKAALMGGLSTAKRAVVDREIFCLLEKGLAPNLMSFVAEILGPEGLRRASPATPSGGQVSGSGEWERGGGGEVRWGALGCAETVAPGG-FGAAAPTPAAPAAG-------------GLTEGAVARREDFMLDSLVCSVEVLFFIYYSYQIKPAEAMQLVNLLETAGRELLALQKIVGDSNPLNPAGKSFHTGFGA---GTGVGPFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDGGNEAQRQRDVVRLCAVMEITSVLLCTLSMALSQNCELYGRGAPGEKPKSGNALAVMAS--GGXXXQSWGGGNTEDITSLNQLICRHQWDHEEVQAAVIMVWATFVAPFAAGQQAFAETNADKHLRDIVSAAGAHGAVGFLRGPVLSTLRRPPFPARDMTPRPFYLEALSGLAAAYLAIVLDESKACSLPPRVEQQLEEMEAEW-YAGXXXXXXXXXXXXXXAKKEDTLEDVMYWVGQLAEAYPDFADKVCWRPR 1839
            QAML++FLRS E NE++GDLSEGLEARR+DL+CPDPSRC P+T EDRAALQSGSVVVKGFRAKLPPQAV+ELVALSDEL+INEVVCV+LWSQVNEPWQRRALEKRL++PAGSLS+DLPLA RKLFYLER +LL+FEA LFKAAL+  LS AK+AV+DREIF LLEK LA NLMSFVA++LGPEG+RR +  + +                      LG ++  AP G FGAA    AAPA G              ++EGA  RRE+FMLDSLVC+VEVLFFIYYSYQIKP EA QLV L+ETAGRELLALQK V +++ + P       G G      G+  +G           XXXXXXXXXXXXXXXXXXX  D   EA+R RDV RLCA +E+TSVLLCTLSMALSQN  LY R  PG K    NAL  +A   GG   Q  G G+ E I  LN+ IC  +WDH +VQ AV+MVWA+F+APFA+G Q  A+T+ADK L+ +++AA  +GAV FLRGPVL+ LRRPPF AR + PRPFYLEALSGLAA Y+ I+LD  + C  P R ++QL+ + A W ++                +KEDTLED+++W GQL+EA+P+FADK  W  R
Sbjct:   11 QAMLQEFLRSREGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGSVVVKGFRAKLPPQAVSELVALSDELDINEVVCVDLWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTSPSSTAAM-------------------LGSSQAGAPTGLFGAAPAATAAPAPGQAGXXXXXXXXXXSMSEGAAERREEFMLDSLVCAVEVLFFIYYSYQIKPDEAKQLVTLVETAGRELLALQKTVAEADGIPPTATPATAGGGGLHYTNGLSGYGFGHGATAAGATXXXXXXXXXXXXXXXXXXXXXD---EAERHRDVFRLCAALEVTSVLLCTLSMALSQNNALYSRSVPGAKNNGSNALNALALVVGGGGGQPLGDGDKEVILHLNKEICSREWDHSQVQGAVMMVWASFIAPFASGGQTVADTDADKQLQQVMAAAAVNGAVKFLRGPVLTVLRRPPFAARSVAPRPFYLEALSGLAATYVGILLDAKRNCRFPYRFKEQLDHLRANWNHSVNAGGPGVAPELLSQLRKEDTLEDLIFWTGQLSEAHPEFADKRLWLER 621          
BLAST of mRNA_M-pyrifera_M_contig10342.729.1 vs. uniprot
Match: A0A6H5L7W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W6_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 4.680e-85
Identity = 161/278 (57.91%), Postives = 187/278 (67.27%), Query Frame = 1
Query:    1 QAMLEDFLRSTESNEVMGDLSEGLEARREDLVCPDPSRCFPKTAEDRAALQSGSVVVKGFRAKLPPQAVTELVALSDELNINEVVCVELWSQVNEPWQRRALEKRLAEPAGSLSDDLPLAVRKLFYLERHSLLLFEAGLFKAALMGGLSTAKRAVVDREIFCLLEKGLAPNLMSFVAEILGPEGLRRASPATPSGGQVSGSGEWERGGGGEVRWGALGCAETVAPGGFGAAAPTPAAPAAGGL----TEGAVARREDFMLDSLVCSVEVLFFIYYSYQ 822
            QAML++FLRS + NE++GDLSEGLEARR+DL+CPDPSRC P+T EDR ALQSGSVVVKGFRAK                             VNEPWQRRALEKRL++PAGSLS+DLPLA RKLFYLER +LL+FEA LFKAAL+  LS AK+AV+DREIF LLEK LA NLMSFVA++LGPEG+RR +P T +   V                   G ++  AP G   AAP              +EGA  RRE+FMLDSLVC+VEVLFFIYYSYQ
Sbjct:   19 QAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRTALQSGSVVVKGFRAK-----------------------------VNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPPTSTAATV-------------------GSSQAGAPTGLFGAAPAXXXXXXXXXXXXXSEGAAERREEFMLDSLVCAVEVLFFIYYSYQ 248          
BLAST of mRNA_M-pyrifera_M_contig10342.729.1 vs. uniprot
Match: A0A6H5L8I6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I6_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 6.530e-52
Identity = 133/249 (53.41%), Postives = 161/249 (64.66%), Query Frame = 1
Query:  850 VNLLETAGRELLALQKIVGDSNPLNPA-------GKSFH-----TGFGAGTGVGPFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDGGNEAQRQRDVVRLCAVMEITSVLLCTLSMALSQNCELYGRGAPGEKPKSGNALAVMAS--GGXXXQSWGGGNTEDITSLNQLICRHQWDHEEVQAAVIMVWATFVAPFAAGQQAFAETNADKHLRDIVSAAGAHGAVGFLRGPVLSTLRRPPFPARDM 1554
            V L+ETAGRELLALQK V D++ + P        G   H     +G G G G    G+ XXXXXXXXXXXXXXXXXX              G+E +R RDV RLCA +E+TSVLLCTLSMALSQN  LY R  PG K    NAL  +A   GG   Q  G G+ E I  LN+ IC  +WDH +VQ AV+MVWA+F+APFA+G Q  A+T+ADK L+ +++AA  +GAV FLRGPVL+ LRRPPF AR +
Sbjct:    9 VTLVETAGRELLALQKTVADTDGIPPTATPATAGGGGVHYTNGLSGCGFGHGATAAGATXXXXXXXXXXXXXXXXXX--------------GDETERHRDVFRLCAALEVTSVLLCTLSMALSQNNALYSRSLPGAKNNGRNALNALALVVGGGGGQPLGDGDKEVILHLNKEICSREWDHSQVQGAVMMVWASFIAPFASGGQTVADTDADKQLQQVMAAAAVNGAVKFLRGPVLTVLRRPPFAARSV 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10342.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNG7_ECTSI1.320e-21759.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7W6_9PHAE4.680e-8557.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8I6_9PHAE6.530e-5253.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10342contigM-pyrifera_M_contig10342:1390..8953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score634.4
Seed ortholog evalue5.4e-179
Seed eggNOG ortholog2880.D7FNG7
Hectar predicted targeting categoryother localisation
EggNOG OGs2CAJ9@1,2SW6E@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons10
Model size1839
Cds size1833
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.6138735-UTR-M-pyrifera_M_contig10342:1389..13951622815539.6138735-UTR-M-pyrifera_M_contig10342:1389..1395Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10342 1390..1395 +
1692277455.0831814-UTR-M-pyrifera_M_contig10342:1389..13951692277455.0831814-UTR-M-pyrifera_M_contig10342:1389..1395Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10342 1390..1395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.6307728-CDS-M-pyrifera_M_contig10342:1395..15781622815539.6307728-CDS-M-pyrifera_M_contig10342:1395..1578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 1396..1578 +
1692277455.094401-CDS-M-pyrifera_M_contig10342:1395..15781692277455.094401-CDS-M-pyrifera_M_contig10342:1395..1578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 1396..1578 +
1622815539.6423438-CDS-M-pyrifera_M_contig10342:2484..25711622815539.6423438-CDS-M-pyrifera_M_contig10342:2484..2571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 2485..2571 +
1692277455.1122077-CDS-M-pyrifera_M_contig10342:2484..25711692277455.1122077-CDS-M-pyrifera_M_contig10342:2484..2571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 2485..2571 +
1622815539.7192204-CDS-M-pyrifera_M_contig10342:3726..38731622815539.7192204-CDS-M-pyrifera_M_contig10342:3726..3873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 3727..3873 +
1692277455.126561-CDS-M-pyrifera_M_contig10342:3726..38731692277455.126561-CDS-M-pyrifera_M_contig10342:3726..3873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 3727..3873 +
1622815539.728568-CDS-M-pyrifera_M_contig10342:4295..45351622815539.728568-CDS-M-pyrifera_M_contig10342:4295..4535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 4296..4535 +
1692277455.1353524-CDS-M-pyrifera_M_contig10342:4295..45351692277455.1353524-CDS-M-pyrifera_M_contig10342:4295..4535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 4296..4535 +
1622815539.740275-CDS-M-pyrifera_M_contig10342:5279..54381622815539.740275-CDS-M-pyrifera_M_contig10342:5279..5438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 5280..5438 +
1692277455.1438239-CDS-M-pyrifera_M_contig10342:5279..54381692277455.1438239-CDS-M-pyrifera_M_contig10342:5279..5438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 5280..5438 +
1622815539.7521725-CDS-M-pyrifera_M_contig10342:6105..64681622815539.7521725-CDS-M-pyrifera_M_contig10342:6105..6468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 6106..6468 +
1692277455.1525624-CDS-M-pyrifera_M_contig10342:6105..64681692277455.1525624-CDS-M-pyrifera_M_contig10342:6105..6468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 6106..6468 +
1622815539.7668905-CDS-M-pyrifera_M_contig10342:7314..74851622815539.7668905-CDS-M-pyrifera_M_contig10342:7314..7485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 7315..7485 +
1692277455.1621904-CDS-M-pyrifera_M_contig10342:7314..74851692277455.1621904-CDS-M-pyrifera_M_contig10342:7314..7485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 7315..7485 +
1622815539.7795973-CDS-M-pyrifera_M_contig10342:8038..82361622815539.7795973-CDS-M-pyrifera_M_contig10342:8038..8236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 8039..8236 +
1692277455.1746995-CDS-M-pyrifera_M_contig10342:8038..82361692277455.1746995-CDS-M-pyrifera_M_contig10342:8038..8236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 8039..8236 +
1622815539.7953496-CDS-M-pyrifera_M_contig10342:8563..87271622815539.7953496-CDS-M-pyrifera_M_contig10342:8563..8727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 8564..8727 +
1692277455.183786-CDS-M-pyrifera_M_contig10342:8563..87271692277455.183786-CDS-M-pyrifera_M_contig10342:8563..8727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 8564..8727 +
1622815539.8087149-CDS-M-pyrifera_M_contig10342:8832..89531622815539.8087149-CDS-M-pyrifera_M_contig10342:8832..8953Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 8833..8953 +
1692277455.1938324-CDS-M-pyrifera_M_contig10342:8832..89531692277455.1938324-CDS-M-pyrifera_M_contig10342:8832..8953Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10342 8833..8953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10342.729.1prot_M-pyrifera_M_contig10342.729.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10342 1396..8953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10342.729.1

>prot_M-pyrifera_M_contig10342.729.1 ID=prot_M-pyrifera_M_contig10342.729.1|Name=mRNA_M-pyrifera_M_contig10342.729.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=611bp
MLEDFLRSTESNEVMGDLSEGLEARREDLVCPDPSRCFPKTAEDRAALQS
GSVVVKGFRAKLPPQAVTELVALSDELNINEVVCVELWSQVNEPWQRRAL
EKRLAEPAGSLSDDLPLAVRKLFYLERHSLLLFEAGLFKAALMGGLSTAK
RAVVDREIFCLLEKGLAPNLMSFVAEILGPEGLRRASPATPSGGQVSGSG
EWERGGGGEVRWGALGCAETVAPGGFGAAAPTPAAPAAGGLTEGAVARRE
DFMLDSLVCSVEVLFFIYYSYQIKPAEAMQLVNLLETAGRELLALQKIVG
DSNPLNPAGKSFHTGFGAGTGVGPFGSFGGGAAAGAAASAAAVAGGAGGV
GATGVGGRDGGNEAQRQRDVVRLCAVMEITSVLLCTLSMALSQNCELYGR
GAPGEKPKSGNALAVMASGGGGGQSWGGGNTEDITSLNQLICRHQWDHEE
VQAAVIMVWATFVAPFAAGQQAFAETNADKHLRDIVSAAGAHGAVGFLRG
PVLSTLRRPPFPARDMTPRPFYLEALSGLAAAYLAIVLDESKACSLPPRV
EQQLEEMEAEWYAGGGGGGGGQQELLEAAKKEDTLEDVMYWVGQLAEAYP
DFADKVCWRPR
back to top

mRNA from alignment at M-pyrifera_M_contig10342:1390..8953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10342.729.1 ID=mRNA_M-pyrifera_M_contig10342.729.1|Name=mRNA_M-pyrifera_M_contig10342.729.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7564bp|location=Sequence derived from alignment at M-pyrifera_M_contig10342:1390..8953+ (Macrocystis pyrifera P11B4 male)
CAGGCAATGCTGGAGGACTTCCTCCGATCGACGGAAAGCAACGAGGTCAT GGGAGACCTGTCCGAGGGCCTCGAAGCGCGGAGAGAGGACCTGGTCTGCC CGGACCCCTCGCGATGCTTCCCCAAGACGGCGGAGGATCGAGCCGCCCTG CAGAGCGGCAGCGTGGTGGTGAAAGGGTTCCGCGCGAAGGTGGCCATAGG ATGGTCGGGGGAAGGGGTTGGGGAATGGGGGGGTATCGGAGGGGTGGGGC TGTGTGGCGGGAGGAATCTGGGCGGTTTTTTGTTTTCCGCCGCAGTATAT TTATTTGGGGATATATATTTAGATATACGTGAGCGCGGCAAGGTTACGTT TCAGTGTTGAGCGAACGTTTCGTTTCAGTGTTGAATCGAGCGTTTCGCTT CAGTGCCGATTGAGACGTGAAAATAGTGACAAAAGTGGCATGTTGTTGGT GTTTCTGCCTCAAGCGGGCGAGGTGGTCATGGTGATGTGGCTGAGCTGCT AGAGGACACGATCACCTCAATATCTGCTGCTCCTGCTGGTGGTCTCTCGC AATGAAGCGCCAATCAACCGGAGAATGTTGGTAGCATCCGCTTTTGGGGG GGAGGAGAGATGGGGGATCCGATACCACGTGGCAGTTAGCTACGTGGATG AGTGTGCATTTATTGATAATCGCTCGCCGCTTTTTTTTGTCCCTTATCGT CGCCTTTCTGTTAGAGAGGTTGGACCCAAAATATTTGCCCGTTTTCGCCT GGGTGATGCCCGGCGCTGCACTTTGCTGTCGTTTTGTCGGCCAACCGACC AACGTCTTATATACGGCTGTACCGTCCAAATGGCGTAGCGTGTTACGTAA GTATGTCTTTTTGAGAATGAAGCGAGGAGTGCGTGCCCGCTTAGTGTCAT ATGGGAGCGGTATAATTTAGTATCTACCTGGTGTACGAAGTATATTAATG TTTGTGACAAGGCCGGCCACACTCTTGCCGCCATCCACCTCTTTCGACGG CTTTTGTTTTTTTTTAAAGTTTTCACGTGGCATGTCTTGCCCTGTCCCCC CTCTGTGTGTTTTGTGCGTTTGCGGGTGTATGTGTGCACGTGCAGCTGCC GCCCCAAGCGGTGACGGAGCTTGTGGCCCTTTCTGACGAGCTCAACATCA ACGAGGTGGTGTGCGTGGAGCTGTGGTCGCAGGTGACAACCCTATTTTAC TGTATTAAGAGATGCCAGTACCTGGCAGGCGTTTCGTTCTGTTGAAAGAG TGGTGGGTCACTTCGTTTTTTTAACATAACTGGTAGGTCGTTTAGCTGCG TTGTAAACAAGTTGTTTTGCTGTGTTGAAATGCGTTTCGCTGCGTGTGCT ACAATGTTGAGCTGCGTCTCTCTGTATTGGAAGGCTTTTCTCTGTGCTTC AAGGCGTCCTTTGGTGTTGAAAGGCGCTTCGCGTACGGTGCCGCACGGTA TCCTAAAGGTACAGTAAATCGCACTGCGGATCGTTCGCCTTGCCGCGCGG CAGGACCGTCGCGGGAGATCTAACGAGAGACTTGAGGTCCGACGCTTCGC GTTTTTGCCGACATTTCCCTGCCTGAACACCGAATTTTCTATGTTCCGCT TTTACTCGCACGCAAAGGTCAACCGCCTGTCGGGTTATTCCGCGTGTCAG GAACTCGCTCGTTCCCTCGATGGGTACAGTCGTACTCCGCAGTACCAACG CAAGCAGCTACCCGACCCCTTGCACCCCACACCCCACACGCTAAACCCTA TATGCCTCTATACGCGGGGACTGCGCGCGTCCCGACCCTGATATGCTATT TCGCGCTCTCTGCGGCTGCTATGAATCCTTTCATGGTAGGGGCTCCTGTG CAGTGACACCAACTGGAAACCAATATTTACAATAGTGTATGTATTTTTTA ATGTTTTATGCCTGGTACTTATTATGCACTTGTTGGTAGTCGGCGAGGCC AGTACGTTCTACTTTTTTCATGTTTTTCCGATATATTACGGTTTCAAGGC ATTTTTAATATTTCAATCGCTACCAGCCTGACACCTACTACCGGAGTGAG CGCCTTATACTCGTGCAGCCTGCTACCTCTGCTCCGACGTGCGCTCGGCT CGCTCTCCTATGCAGTATACGATTATTGCTGTTAAGCCCTGCGTACCGGG GGCTGCGATCACGTTTTGTATAGGCTTGTGAACATGCCGTTCTGTCTGCA CTCTGCGATCGCTTTTTATTTTTGGACTTGTATACAAGTAAACACGCCCC TTTCTCTTTGTGTCATACCAACACAACACAAGATCGTGTCCTGCCAGGTA TAAACCCTGTACAATATCTCTCATTCTTATTCTTCAGGTGAACGAGCCTT GGCAGCGGCGGGCGCTGGAGAAAAGGCTGGCGGAGCCAGCGGGGAGCCTG AGCGACGATCTGCCGCTCGCCGTCCGGAAGCTGTTTTACCTCGAGCGCCA CAGCCTGCTGCTCTTCGAGGCAGGGCTCTTCAAGGTTCGTTTTTTTGCTT TTTGTCGCCCTCGTGCATCCCCCCCCTCCGACCCCTTTCCACCGCGGGGG TCGCCCCTATTCATCCCTTCTTTCTAATCATTTACCACCCCGGCGATCGC CTTCATTCAACCCATCCTCCTCACCCCTATCCACCCCGGGAATGGCCCTA ATTCATCCCCTGTCTCACCGCCCGGGGATCGCCTTAGAACATCCCCGTCC CAGTCCCACTCCTCCCAACCCGAGGACCGGTCTCATATAGCCCATCCCCT GCCCCGTCTCGAAAGGGATGCATGGTCAATGGTCAAATGACTGAGGCAAG CAACAATGAGTACCCCCCCCCCTCCTCCGGCCATCTGCCCCCCCCCCGGG TGTGGCCCTCGTTTTATCCTCGACCCCTTGCGTTTTTGTTGTTGTATATT TTGAAGGCGGCGCTGATGGGGGGCTTGTCCACCGCTAAGAGGGCAGTGGT CGATCGAGAGATTTTCTGCCTCCTGGAGAAGGGCCTGGCCCCGAACCTCA TGAGCTTCGTGGCCGAGATCCTTGGCCCCGAGGGGCTGCGGCGAGCGTCC CCTGCCACGCCGTCGGGCGGCCAGGTGAGCGGTTCGGGGGAGTGGGAGAG GGGGGGGGGGGGGGAGGTGAGGTGGGGTGCGCTGGGGTGCGCTGAGGTGC GGTAGAGAAAGGGAGGGGTGTCTAGGGGAGGGGAGGAGAGGGGAGGGGAA ATATGCCGAGTAACTTATCCATGAATGCTACGAGGCTGTTGGGGATATGT GTGCATGGTATCATGTGAGCGGGTCGATACATTGTCGTTGTGTATGCGCG TCGGGTGGAGGCGGCGGGAGCGGAAGGCGGTGGGCAGCAGGGTGACACTT GAGCATGTTTCAGCACCCGAACCTGAAGAGCTGCCCACGGCTGTTCACCT GGCCAGTCAGAGGGTTCGACGACGGTGAGCATGGCTTGGGGCAGGGTACG ATCCCCTGGAGCTGCCGGCGCCCGTTCATAAAAGGAAGTTGCTCTACAGT AGTTCCAGGAAATGAGAGCGTGGCGCTGTCTCAAAAGGGACGATCACGTT CCGGGTGCTACTACTCTTGTTGCCGCTGCTGCTGATGTTGCCGCTGCTGT TTCTGCTGATATTTCCGCTGTTGTTGCTGCTGTCGTCGCTGATGTTGCTG CTGCCATCAATGCTGCCGCCGCTGATTTTGTTCCTGCTGCTGCCGCTGCT GCTTGTCGATTTTGTTGCCGCTGTTGCTGTGGCTGTTGCGGCTGCTGTTG CTGCTACCGCTGCTACCGCTGGTGCTGGTGCTGCCGCCGCCACTGGTGCT GCTGGTGCTGGGGCGCCGCTGCTGGTGGTGGTGATGGTGATGGCGCTCCT GTTGGTGCCACTGCTGGCGCTCGTTTTCTCCCGGTGGCAGACGGTTGCGC CCGGGGGGTTCGGCGCGGCGGCACCCACCCCTGCGGCGCCCGCAGCGGGC GGCTTGACGGAAGGGGCGGTGGCGCGGCGGGAGGATTTCATGCTGGACTC TCTCGTCTGTTCGGTGGAGGTCCTGTTTTTCATCTATTACTCGTACCAGG TATGGAGAGTGGCCGGGTGGACGGTGCGCGGGGGGTGAGGAGGGGGGGGG GGCGGGGGGAACCCTGCTGCTGGTCGGTCGCGGAGGTCACCGTAGAGGAA TCGAATGATCGCCTGTTGTTGTGTGTTTGATGCTCATTTTGTTGTTGCTG TTGTGGTCCTTTTTGTGGTGGATGCTTTTGCTGGGCAGTATTTGGTACCT TGGTGGTGAGCGGTATATTGTTTTTTTGCCGGCGTGCGTTGTGATTTGCT GCGTTGCCGCCGTGCGGGCTCGAGCACGAGCATTGCCTGTGGGCGCCTTT TTTCTTTTTTCGCTTGTCGGTAGAGAGGTCGCCTCGCGCGCATCCCGAGA CTGAACGATTACTGTCTACCGCTACGCATAGTTATACCTCGTCTGAAGTA CCGCTCGCGGCGGAAAGGAGGCTCTTTTTGTTTTACACGCCACGCCACTC CGAGTAGTTTTCGCTTGGTTTGTGGGAGGGGGGGGAGGGAGGGCTGCGCA CGGTGTGAAGGGGCGCATTTACGTAATCGACATGATTCTTTGCAAGCACA ACTTTTCACTCGGTTCGCTGCAACCGAACGCTCGTAAAGGGTGTCTGATT CCTTCTCGCCCATCCCACTCCCTTCGTCCCCGCCCCTACTATCCTTCCGG CACCTGAAACCCCCAGATCAAGCCCGCGGAAGCGATGCAGTTGGTGAATC TGCTCGAGACCGCGGGCCGAGAGCTTCTGGCTCTTCAGAAAATCGTCGGC GATAGCAATCCCCTCAACCCTGCCGGGAAAAGCTTCCACACCGGCTTTGG CGCCGGCACTGGCGTGGGGCCTTTCGGGAGCTTTGGCGGGGGAGCGGCGG CGGGAGCGGCGGCATCAGCTGCAGCGGTGGCAGGAGGAGCAGGCGGTGTT GGGGCGACAGGGGTCGGGGGTCGGGATGGGGGAAATGAGGCGCAACGGCA GCGCGACGTGGTTCGGCTGTGCGCCGTGATGGAGATCACGTCCGTGCTCC TGTGCACCCTGTCGATGGCGCTCAGTCAGGTACTTGTGTTGATAGCGTGT CTGTTCTCTAGCGTCGTCCGGGGGCACTGTGGCCTTCCTTTCATTCTTTC TTTCTGTTTTTCTCTCCGTGGTCCTGTTTTGCTCTGGGTTCGCGTCTTCG CGTACTGTGTGTCCGTCGCGGCGAGTTGTGGTGCGGCAAGAGTTGGGTGG TGGGGTGGGTCGGGAGTAGGGCGAGTGACTGGTATCATAGCGCGAGTGCC GCCGGGGTAGTGAAAACACACGTTTTTTTTCCTTTGCTGGGTTGGTCGTT GTGAGTGGGCAGTGAGTGGGTGAGTGGCAGGATGGGCTGGTGGGTGCGTG GGTGGGCGGGGTAGGTAGGTCGGTGGCTGGGTGGGTGGGTGGGTAGGTGG GTGGGTAGGTGGGTGGGTAGGTGGGTGGGTGGGTGGATGGATGCGCAGTG AGTGGATTGGGATGTCGGCGGGCGGGTGGAAGTGCTGTGGGGGGTAGGTG GCGGTGACGCGCGATAAATGGATATCCCGCGTGCGTTTGGCCGGTAAGAA CGTAGAAAAAGGGAGACAGCGTGCTGACCTCTTTCGTACCGGAGGAGAGG GGGTTGGGGTGTACTCATGATATGCGTGGTCGTAGTCGTGTGACTATGGG TCCTCGCATCCCTACTCTGCCGGAACGGATCACGTCGGGTTTGCATCGAT CAAGCAGGGGCGGTGGGGGGTATAAGGGGGGTTTAGGGAGAGGGGATCTC GCGTCGTCTGATCCTATCTCGCCGTCGTGGCCGGTGTCATCTGTGGTGTC TTTTCGTTGTGTCGCTTCACCACGGACTACCATTCGTGCTTACAGTGCGT TCTGTGCGCGTCGCGCGTTCCGCAGAACTGCGAACTGTACGGGCGCGGAG CGCCGGGGGAGAAGCCCAAGAGCGGGAATGCGCTCGCGGTCATGGCGAGC GGTGGTGGCGGCGGCCAGTCTTGGGGAGGTGGGAACACGGAGGACATCAC GTCGCTCAATCAACTCATTTGCCGTCATCAGTGGGACCATGAGGAGGTGC GTCGTATAACAGTAGTAGTAGTAATAATATTCCTCCGTGGTCACTACTGT GGAAGGCGTAATGAGCTGGCGACCCGCGGGTGGGGAGCACCTCGAGCGTC CCCCCCACCCTTCCACAGCGCACGATGACGTGCCGTATTTGTGTCCTCAT CATACGTAGCCCCATGGTACATTCTCATGCTCCCCCTCATGTTGACTACG TACGTGTACGACATTTTCCACCTTCTCCTGGTTGCCACGATCGGCGCAGC AGCGCATCAGCAGCAGGCAGCATGTACACTTTGTAAGTAAGAGCCACACG AGGAGTTGGATTCCGTTTTTTTCAGGGTGAGAGTCATACCCAGTGTGTCC AGTTGATGGTGTTGCTCTGATGTTGAGGCGCACAGGAGGCGGGGCCTTAT TGTTTCGGAGTCAAGGGAAGTAGGGATGGAAAGCAGGAATGGGGTCACAA GACATCTACTCGGAAATCAAGGACGACGAATATTTGTGGCGACTGGCTTA GAAATATGTTGTCTGTGTGTGCATACATGTGCGCGTTTGTCGGAGTCAGG TCCAAGCAGCCGTGATAATGGTGTGGGCAACCTTCGTGGCGCCCTTCGCG GCGGGACAGCAGGCGTTTGCGGAGACCAACGCGGACAAGCACCTCCGCGA CATCGTCAGCGCCGCCGGCGCGCACGGAGCGGTCGGATTTCTCAGGGGCC CTGTTCTATCCACACTGCGCCGTCCGCCCTTCCCGGCCAGGGACATGGTA GGTCGTGTTGGGGTGAAGAGTGGGTTGGGGTGGGTGAGGTGGAATGAAGT GGGCTTGTGGAACCGAGTTTCTTGTCTCACCGGCTTCATACGACGTATAT ATACAAGCACACTTGAACTTGGTTTCTTGAACCGCCGCTGCCGCATTCCG AACGACCTGTCGCCTGCCCGCACGCCCGCCTGTCCGGTCGCTACTTGGCC ACACTAAAATATCGCGCGCCCTGGCTAATCTTATTGCATCTCCTCTACGC CTGCGCGTTCGGGGTACACGGATACGGGTACGCGCGCGCGATGGTGCAAT CGCACGGCTGCTGGGGCGCAACAGACTCCGCGACCGTTTTACCTGGAAGC CCTGTCGGGGCTGGCGGCCGCCTACCTTGCGATCGTGCTGGACGAGTCGA AGGCTTGCTCGCTGCCGCCGAGAGTGGAGCAGCAGCTGGAGGAGATGGAG GCGGAGTGGTACGCCGGAGGAGGAGGTGGAGGGGGGGGGTTGGGGATGGG GGTGGTTGGGGGCGTGGCGGGATATGGGCAACAGCAACAGCAACAGCAAC AGCTTCAGCAGCAGCAGCTGCAGCAGCAGGAGCGGCAGCAGAGGCAGCAG GAGCTTCTGGAGGCAGCCAAAAAGGAAGACACGCTGGAGGATGTCATGTA CTGGGTCGGACAACTCGCGGAGGCGTACCCCGACTTCGCAGACAAAGTGT GTTGGAGACCCCGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10342:1390..8953+

>mRNA_M-pyrifera_M_contig10342.729.1 ID=mRNA_M-pyrifera_M_contig10342.729.1|Name=mRNA_M-pyrifera_M_contig10342.729.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3666bp|location=Sequence derived from alignment at M-pyrifera_M_contig10342:1390..8953+ (Macrocystis pyrifera P11B4 male)
ATGCTGGAGGACTTCCTCCGATCGACGGAAAGCAACGAGGTCATGGGAGA
CCTGTCCGAGGGCCTCGAAGCGCGGAGAGAGGACCTGGTCTGCCCGGACC
CCTCGCGATGCTTCCCCAAGACGGCGGAGGATCGAGCCGCCCTGCAGAGC
GGCAGCGTGGTGGTGAAAGGGTTCCGCGCGAAGATGCTGGAGGACTTCCT
CCGATCGACGGAAAGCAACGAGGTCATGGGAGACCTGTCCGAGGGCCTCG
AAGCGCGGAGAGAGGACCTGGTCTGCCCGGACCCCTCGCGATGCTTCCCC
AAGACGGCGGAGGATCGAGCCGCCCTGCAGAGCGGCAGCGTGGTGGTGAA
AGGGTTCCGCGCGAAGCTGCCGCCCCAAGCGGTGACGGAGCTTGTGGCCC
TTTCTGACGAGCTCAACATCAACGAGGTGGTGTGCGTGGAGCTGTGGTCG
CAGCTGCCGCCCCAAGCGGTGACGGAGCTTGTGGCCCTTTCTGACGAGCT
CAACATCAACGAGGTGGTGTGCGTGGAGCTGTGGTCGCAGGTGAACGAGC
CTTGGCAGCGGCGGGCGCTGGAGAAAAGGCTGGCGGAGCCAGCGGGGAGC
CTGAGCGACGATCTGCCGCTCGCCGTCCGGAAGCTGTTTTACCTCGAGCG
CCACAGCCTGCTGCTCTTCGAGGCAGGGCTCTTCAAGGTGAACGAGCCTT
GGCAGCGGCGGGCGCTGGAGAAAAGGCTGGCGGAGCCAGCGGGGAGCCTG
AGCGACGATCTGCCGCTCGCCGTCCGGAAGCTGTTTTACCTCGAGCGCCA
CAGCCTGCTGCTCTTCGAGGCAGGGCTCTTCAAGGCGGCGCTGATGGGGG
GCTTGTCCACCGCTAAGAGGGCAGTGGTCGATCGAGAGATTTTCTGCCTC
CTGGAGAAGGGCCTGGCCCCGAACCTCATGAGCTTCGTGGCCGAGATCCT
TGGCCCCGAGGGGCTGCGGCGAGCGTCCCCTGCCACGCCGTCGGGCGGCC
AGGTGAGCGGTTCGGGGGAGTGGGAGAGGGGGGGGGGGGGGGAGGTGAGG
TGGGGTGCGCTGGGGTGCGCTGAGGCGGCGCTGATGGGGGGCTTGTCCAC
CGCTAAGAGGGCAGTGGTCGATCGAGAGATTTTCTGCCTCCTGGAGAAGG
GCCTGGCCCCGAACCTCATGAGCTTCGTGGCCGAGATCCTTGGCCCCGAG
GGGCTGCGGCGAGCGTCCCCTGCCACGCCGTCGGGCGGCCAGGTGAGCGG
TTCGGGGGAGTGGGAGAGGGGGGGGGGGGGGGAGGTGAGGTGGGGTGCGC
TGGGGTGCGCTGAGACGGTTGCGCCCGGGGGGTTCGGCGCGGCGGCACCC
ACCCCTGCGGCGCCCGCAGCGGGCGGCTTGACGGAAGGGGCGGTGGCGCG
GCGGGAGGATTTCATGCTGGACTCTCTCGTCTGTTCGGTGGAGGTCCTGT
TTTTCATCTATTACTCGTACCAGACGGTTGCGCCCGGGGGGTTCGGCGCG
GCGGCACCCACCCCTGCGGCGCCCGCAGCGGGCGGCTTGACGGAAGGGGC
GGTGGCGCGGCGGGAGGATTTCATGCTGGACTCTCTCGTCTGTTCGGTGG
AGGTCCTGTTTTTCATCTATTACTCGTACCAGATCAAGCCCGCGGAAGCG
ATGCAGTTGGTGAATCTGCTCGAGACCGCGGGCCGAGAGCTTCTGGCTCT
TCAGAAAATCGTCGGCGATAGCAATCCCCTCAACCCTGCCGGGAAAAGCT
TCCACACCGGCTTTGGCGCCGGCACTGGCGTGGGGCCTTTCGGGAGCTTT
GGCGGGGGAGCGGCGGCGGGAGCGGCGGCATCAGCTGCAGCGGTGGCAGG
AGGAGCAGGCGGTGTTGGGGCGACAGGGGTCGGGGGTCGGGATGGGGGAA
ATGAGGCGCAACGGCAGCGCGACGTGGTTCGGCTGTGCGCCGTGATGGAG
ATCACGTCCGTGCTCCTGTGCACCCTGTCGATGGCGCTCAGTCAGATCAA
GCCCGCGGAAGCGATGCAGTTGGTGAATCTGCTCGAGACCGCGGGCCGAG
AGCTTCTGGCTCTTCAGAAAATCGTCGGCGATAGCAATCCCCTCAACCCT
GCCGGGAAAAGCTTCCACACCGGCTTTGGCGCCGGCACTGGCGTGGGGCC
TTTCGGGAGCTTTGGCGGGGGAGCGGCGGCGGGAGCGGCGGCATCAGCTG
CAGCGGTGGCAGGAGGAGCAGGCGGTGTTGGGGCGACAGGGGTCGGGGGT
CGGGATGGGGGAAATGAGGCGCAACGGCAGCGCGACGTGGTTCGGCTGTG
CGCCGTGATGGAGATCACGTCCGTGCTCCTGTGCACCCTGTCGATGGCGC
TCAGTCAGAACTGCGAACTGTACGGGCGCGGAGCGCCGGGGGAGAAGCCC
AAGAGCGGGAATGCGCTCGCGGTCATGGCGAGCGGTGGTGGCGGCGGCCA
GTCTTGGGGAGGTGGGAACACGGAGGACATCACGTCGCTCAATCAACTCA
TTTGCCGTCATCAGTGGGACCATGAGGAGAACTGCGAACTGTACGGGCGC
GGAGCGCCGGGGGAGAAGCCCAAGAGCGGGAATGCGCTCGCGGTCATGGC
GAGCGGTGGTGGCGGCGGCCAGTCTTGGGGAGGTGGGAACACGGAGGACA
TCACGTCGCTCAATCAACTCATTTGCCGTCATCAGTGGGACCATGAGGAG
GTCCAAGCAGCCGTGATAATGGTGTGGGCAACCTTCGTGGCGCCCTTCGC
GGCGGGACAGCAGGCGTTTGCGGAGACCAACGCGGACAAGCACCTCCGCG
ACATCGTCAGCGCCGCCGGCGCGCACGGAGCGGTCGGATTTCTCAGGGGC
CCTGTTCTATCCACACTGCGCCGTCCGCCCTTCCCGGCCAGGGACATGGT
CCAAGCAGCCGTGATAATGGTGTGGGCAACCTTCGTGGCGCCCTTCGCGG
CGGGACAGCAGGCGTTTGCGGAGACCAACGCGGACAAGCACCTCCGCGAC
ATCGTCAGCGCCGCCGGCGCGCACGGAGCGGTCGGATTTCTCAGGGGCCC
TGTTCTATCCACACTGCGCCGTCCGCCCTTCCCGGCCAGGGACATGACTC
CGCGACCGTTTTACCTGGAAGCCCTGTCGGGGCTGGCGGCCGCCTACCTT
GCGATCGTGCTGGACGAGTCGAAGGCTTGCTCGCTGCCGCCGAGAGTGGA
GCAGCAGCTGGAGGAGATGGAGGCGGAGTGGTACGCCGGAGGAGGAGGTG
GAGGGGGGGGACTCCGCGACCGTTTTACCTGGAAGCCCTGTCGGGGCTGG
CGGCCGCCTACCTTGCGATCGTGCTGGACGAGTCGAAGGCTTGCTCGCTG
CCGCCGAGAGTGGAGCAGCAGCTGGAGGAGATGGAGGCGGAGTGGTACGC
CGGAGGAGGAGGTGGAGGGGGGGGGCAGCAGGAGCTTCTGGAGGCAGCCA
AAAAGGAAGACACGCTGGAGGATGTCATGTACTGGGTCGGACAACTCGCG
GAGGCGTACCCCGACTTCGCAGACAAAGTGTGTTGGAGACCCCGGGCAGC
AGGAGCTTCTGGAGGCAGCCAAAAAGGAAGACACGCTGGAGGATGTCATG
TACTGGGTCGGACAACTCGCGGAGGCGTACCCCGACTTCGCAGACAAAGT
GTGTTGGAGACCCCGG
back to top