mRNA_M-pyrifera_M_contig10342.729.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig10342.729.1 vs. uniprot
Match: D7FNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG7_ECTSI) HSP 1 Score: 632 bits (1629), Expect = 1.320e-217 Identity = 376/633 (59.40%), Postives = 450/633 (71.09%), Query Frame = 1 Query: 1 QAMLEDFLRSTESNEVMGDLSEGLEARREDLVCPDPSRCFPKTAEDRAALQSGSVVVKGFRAKLPPQAVTELVALSDELNINEVVCVELWSQVNEPWQRRALEKRLAEPAGSLSDDLPLAVRKLFYLERHSLLLFEAGLFKAALMGGLSTAKRAVVDREIFCLLEKGLAPNLMSFVAEILGPEGLRRASPATPSGGQVSGSGEWERGGGGEVRWGALGCAETVAPGG-FGAAAPTPAAPAAG-------------GLTEGAVARREDFMLDSLVCSVEVLFFIYYSYQIKPAEAMQLVNLLETAGRELLALQKIVGDSNPLNPAGKSFHTGFGA---GTGVGPFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDGGNEAQRQRDVVRLCAVMEITSVLLCTLSMALSQNCELYGRGAPGEKPKSGNALAVMAS--GGXXXQSWGGGNTEDITSLNQLICRHQWDHEEVQAAVIMVWATFVAPFAAGQQAFAETNADKHLRDIVSAAGAHGAVGFLRGPVLSTLRRPPFPARDMTPRPFYLEALSGLAAAYLAIVLDESKACSLPPRVEQQLEEMEAEW-YAGXXXXXXXXXXXXXXAKKEDTLEDVMYWVGQLAEAYPDFADKVCWRPR 1839 QAML++FLRS E NE++GDLSEGLEARR+DL+CPDPSRC P+T EDRAALQSGSVVVKGFRAKLPPQAV+ELVALSDEL+INEVVCV+LWSQVNEPWQRRALEKRL++PAGSLS+DLPLA RKLFYLER +LL+FEA LFKAAL+ LS AK+AV+DREIF LLEK LA NLMSFVA++LGPEG+RR + + + LG ++ AP G FGAA AAPA G ++EGA RRE+FMLDSLVC+VEVLFFIYYSYQIKP EA QLV L+ETAGRELLALQK V +++ + P G G G+ +G XXXXXXXXXXXXXXXXXXX D EA+R RDV RLCA +E+TSVLLCTLSMALSQN LY R PG K NAL +A GG Q G G+ E I LN+ IC +WDH +VQ AV+MVWA+F+APFA+G Q A+T+ADK L+ +++AA +GAV FLRGPVL+ LRRPPF AR + PRPFYLEALSGLAA Y+ I+LD + C P R ++QL+ + A W ++ +KEDTLED+++W GQL+EA+P+FADK W R Sbjct: 11 QAMLQEFLRSREGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGSVVVKGFRAKLPPQAVSELVALSDELDINEVVCVDLWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTSPSSTAAM-------------------LGSSQAGAPTGLFGAAPAATAAPAPGQAGXXXXXXXXXXSMSEGAAERREEFMLDSLVCAVEVLFFIYYSYQIKPDEAKQLVTLVETAGRELLALQKTVAEADGIPPTATPATAGGGGLHYTNGLSGYGFGHGATAAGATXXXXXXXXXXXXXXXXXXXXXD---EAERHRDVFRLCAALEVTSVLLCTLSMALSQNNALYSRSVPGAKNNGSNALNALALVVGGGGGQPLGDGDKEVILHLNKEICSREWDHSQVQGAVMMVWASFIAPFASGGQTVADTDADKQLQQVMAAAAVNGAVKFLRGPVLTVLRRPPFAARSVAPRPFYLEALSGLAATYVGILLDAKRNCRFPYRFKEQLDHLRANWNHSVNAGGPGVAPELLSQLRKEDTLEDLIFWTGQLSEAHPEFADKRLWLER 621
BLAST of mRNA_M-pyrifera_M_contig10342.729.1 vs. uniprot
Match: A0A6H5L7W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W6_9PHAE) HSP 1 Score: 276 bits (705), Expect = 4.680e-85 Identity = 161/278 (57.91%), Postives = 187/278 (67.27%), Query Frame = 1 Query: 1 QAMLEDFLRSTESNEVMGDLSEGLEARREDLVCPDPSRCFPKTAEDRAALQSGSVVVKGFRAKLPPQAVTELVALSDELNINEVVCVELWSQVNEPWQRRALEKRLAEPAGSLSDDLPLAVRKLFYLERHSLLLFEAGLFKAALMGGLSTAKRAVVDREIFCLLEKGLAPNLMSFVAEILGPEGLRRASPATPSGGQVSGSGEWERGGGGEVRWGALGCAETVAPGGFGAAAPTPAAPAAGGL----TEGAVARREDFMLDSLVCSVEVLFFIYYSYQ 822 QAML++FLRS + NE++GDLSEGLEARR+DL+CPDPSRC P+T EDR ALQSGSVVVKGFRAK VNEPWQRRALEKRL++PAGSLS+DLPLA RKLFYLER +LL+FEA LFKAAL+ LS AK+AV+DREIF LLEK LA NLMSFVA++LGPEG+RR +P T + V G ++ AP G AAP +EGA RRE+FMLDSLVC+VEVLFFIYYSYQ Sbjct: 19 QAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRTALQSGSVVVKGFRAK-----------------------------VNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPPTSTAATV-------------------GSSQAGAPTGLFGAAPAXXXXXXXXXXXXXSEGAAERREEFMLDSLVCAVEVLFFIYYSYQ 248
BLAST of mRNA_M-pyrifera_M_contig10342.729.1 vs. uniprot
Match: A0A6H5L8I6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I6_9PHAE) HSP 1 Score: 188 bits (478), Expect = 6.530e-52 Identity = 133/249 (53.41%), Postives = 161/249 (64.66%), Query Frame = 1 Query: 850 VNLLETAGRELLALQKIVGDSNPLNPA-------GKSFH-----TGFGAGTGVGPFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDGGNEAQRQRDVVRLCAVMEITSVLLCTLSMALSQNCELYGRGAPGEKPKSGNALAVMAS--GGXXXQSWGGGNTEDITSLNQLICRHQWDHEEVQAAVIMVWATFVAPFAAGQQAFAETNADKHLRDIVSAAGAHGAVGFLRGPVLSTLRRPPFPARDM 1554 V L+ETAGRELLALQK V D++ + P G H +G G G G G+ XXXXXXXXXXXXXXXXXX G+E +R RDV RLCA +E+TSVLLCTLSMALSQN LY R PG K NAL +A GG Q G G+ E I LN+ IC +WDH +VQ AV+MVWA+F+APFA+G Q A+T+ADK L+ +++AA +GAV FLRGPVL+ LRRPPF AR + Sbjct: 9 VTLVETAGRELLALQKTVADTDGIPPTATPATAGGGGVHYTNGLSGCGFGHGATAAGATXXXXXXXXXXXXXXXXXX--------------GDETERHRDVFRLCAALEVTSVLLCTLSMALSQNNALYSRSLPGAKNNGRNALNALALVVGGGGGQPLGDGDKEVILHLNKEICSREWDHSQVQGAVMMVWASFIAPFASGGQTVADTDADKQLQQVMAAAAVNGAVKFLRGPVLTVLRRPPFAARSV 243 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10342.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10342.729.1 >prot_M-pyrifera_M_contig10342.729.1 ID=prot_M-pyrifera_M_contig10342.729.1|Name=mRNA_M-pyrifera_M_contig10342.729.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=611bp MLEDFLRSTESNEVMGDLSEGLEARREDLVCPDPSRCFPKTAEDRAALQSback to top mRNA from alignment at M-pyrifera_M_contig10342:1390..8953+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig10342.729.1 ID=mRNA_M-pyrifera_M_contig10342.729.1|Name=mRNA_M-pyrifera_M_contig10342.729.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7564bp|location=Sequence derived from alignment at M-pyrifera_M_contig10342:1390..8953+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig10342:1390..8953+ >mRNA_M-pyrifera_M_contig10342.729.1 ID=mRNA_M-pyrifera_M_contig10342.729.1|Name=mRNA_M-pyrifera_M_contig10342.729.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3666bp|location=Sequence derived from alignment at M-pyrifera_M_contig10342:1390..8953+ (Macrocystis pyrifera P11B4 male)back to top |