mRNA_M-pyrifera_M_contig10334.705.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10334.705.1
Unique NamemRNA_M-pyrifera_M_contig10334.705.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10334.705.1 vs. uniprot
Match: A0A6H5J5V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V9_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.980e-38
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:    1 KVRERLGVVDATVELWLRRSATMLSRGGSETDTDILQAKRRIYGLKDEGRQLDSARVALGERLEDCRAKLDRIVQELELLGEDAVP 258
            KVR+RL VVDATVELW+RRSA MLSRGGSETDTD+LQAKRRIYGLK+EGRQLDSA V L  RLEDCRAKLDRIVQELE LGE A+P
Sbjct:  389 KVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQAKRRIYGLKEEGRQLDSATVELEGRLEDCRAKLDRIVQELEFLGEAAMP 474
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BLAST of mRNA_M-pyrifera_M_contig10334.705.1 vs. uniprot
Match: D8LRJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ5_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 7.400e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 KVRERLGVVDATVELWLRRSATMLSRGGSETDTDILQAKRRIY 129
            KVR+RL VVDATVELW+RRSA MLSRGGSETDTD+LQ  RR +
Sbjct:  237 KVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQTMRRDH 279
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10334.705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J5V9_9PHAE3.980e-3884.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRJ5_ECTSI7.400e-1379.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10334contigM-pyrifera_M_contig10334:4027..5789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000020.1
Exons3
Model size259
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10334.705.1prot_M-pyrifera_M_contig10334.705.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10334 4027..5789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.4649246-CDS-M-pyrifera_M_contig10334:4026..40591622815538.4649246-CDS-M-pyrifera_M_contig10334:4026..4059Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10334 4027..4059 -
1692277454.7193284-CDS-M-pyrifera_M_contig10334:4026..40591692277454.7193284-CDS-M-pyrifera_M_contig10334:4026..4059Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10334 4027..4059 -
1622815538.4791796-CDS-M-pyrifera_M_contig10334:4691..48051622815538.4791796-CDS-M-pyrifera_M_contig10334:4691..4805Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10334 4692..4805 -
1692277454.735078-CDS-M-pyrifera_M_contig10334:4691..48051692277454.735078-CDS-M-pyrifera_M_contig10334:4691..4805Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10334 4692..4805 -
1622815538.4904041-CDS-M-pyrifera_M_contig10334:5678..57891622815538.4904041-CDS-M-pyrifera_M_contig10334:5678..5789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10334 5679..5789 -
1692277454.7474148-CDS-M-pyrifera_M_contig10334:5678..57891692277454.7474148-CDS-M-pyrifera_M_contig10334:5678..5789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10334 5679..5789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10334.705.1

>prot_M-pyrifera_M_contig10334.705.1 ID=prot_M-pyrifera_M_contig10334.705.1|Name=mRNA_M-pyrifera_M_contig10334.705.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
KVRERLGVVDATVELWLRRSATMLSRGGSETDTDILQAKRRIYGLKDEGR
QLDSARVALGERLEDCRAKLDRIVQELELLGEDAVP
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mRNA from alignment at M-pyrifera_M_contig10334:4027..5789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10334.705.1 ID=mRNA_M-pyrifera_M_contig10334.705.1|Name=mRNA_M-pyrifera_M_contig10334.705.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1763bp|location=Sequence derived from alignment at M-pyrifera_M_contig10334:4027..5789- (Macrocystis pyrifera P11B4 male)
AAGGTGCGAGAGCGCCTTGGAGTGGTGGACGCAACAGTGGAGCTTTGGCT
ACGCCGGTCGGCGACCATGCTTTCGCGCGGTGGCTCGGAAACGGACACCG
ACATCCTGCAGGTACATAATCGCAACCCCAGGGCAGCATCATGTTTGCAG
AGTAGTTGTACTCGTAGGTTGCCGGTGCTCGCGAGAATCAAGGCGACCAA
CCGGGACGTACACGCATCGAGCGGTCGCAGGCTAGCTGTTTCTCTGCTGG
CGCATGCCGGCTGAGCACCGGCGCGAAGCAGGGGAATGCAGCGTTAATGT
TGCGGTGAGCCTCTGTGGCAGTGAGCAGTCGAGTGTGGGAGGCGATATAC
GTATCATACGTGTAGGTGTGTCCGTGAGTCGTCAGGTTTGCCTTGCGCGA
TCCCAAATCTGTTGGCCGTGTCTTCGCCTGCCAGGCAAGAGTCAGTCAGT
CGAGAAACTGGGCTGTTTTGTTGCACGACGCCGGGGAAAAATAGATTTTC
GGCGCGTCTGTTGTCGCAGCACGCTGATCTCTGTTTACCTGGCGGCGTTA
CTTTTGTGGTGCCAACACGCGCTTCATTGTTCTGGATGTCGCCGGCGTGC
TCCTCGGGGGCTCACCATCACCGCCAATGAACACGGCGTGATCCCCGCCC
GTGCGCGTCCTTGGAGCAGCGATCACGACGAGAGGAAGGGGGGGTGGGGA
AGGGGTCGTCTATTCCCCGATACGAAGAAGCCCGCGCCTCCCCAGAGCCT
TGTCCTGCAGCACCGCTTAGCACCGCACATACACAAGACCCGAACTCACT
TGTACGGCTTATATTTCGGTTATATACATTTATTTCGATGAACAGCGCTA
TATGGTTGTATTGTTTGCTTGTTCACCCGTGTTTTTCCCCCTGACTTACT
CCGATGTGTTTCCACCGGACGTCCTCTCTGTCTCCTCGTCTCCCTTCATC
TTCACCCCCCCCCCCCCACCCCGTCCCGAAAAAGGCCAAGCGTAGGATCT
ACGGGCTGAAGGACGAGGGGCGGCAGCTGGATAGCGCCAGGGTTGCGCTC
GGCGAGCGGCTGGAGGACTGCCGCGCCAAGCTAGACCGGATCGTGCAGGT
GATACAGCGTAGTGTTTCGCGCGAGCCGTTTTTTCTTTTCGCGAGAGCCG
TGCGGGATTTCGGGAGACGGTTTGAAGAAGGGGGGTGGGTTACTGGTGTG
CACCGTGCGATTGACGCTAAGGCGAAATGTTCGAAACCTGTTGGAGAGAT
GTTAGCTTCGTACTTAGTGTGTTTACCCTGCGATCGTGCGATTGACGTCA
GCAATGCAACATATCGAGGCCAAAACATGTTGTTGTGGCTCAAGTTGTGT
GTACCGATGCTCGTTCATTTTGCTCGCGTGCTTGTTTATTCTGTCCCGGT
GATTATCCGGAACCAGGTGCGACTTTTTCCATGGCGCAACACGCGTTCTT
CTTGTGTTCGGACGGGTGAATGCAACACTAGTAGAACTTTGAATGTACCA
CTGGTGCAGCAAGCACTTTGGCGGCTTGGTGTATGGTAGCGAATCGACAG
CAGTTGGAGGTTCACGATGATTTACGCTCTGCGCACAAACTTCCCAAATG
TATCCCGCACAATGGCAACGGATGGACATGGAAACTTATTTGTGACGTCG
TTGTGGAAGGCCCTGCGTATATCTCACGTCAGTAGGCGTTACTGACAGCC
CCCTAACTGCCCCGCATTCCCTCCGTCCAGGAACTCGAACTCCTCGGGGA
AGATGCGGTGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10334:4027..5789-

>mRNA_M-pyrifera_M_contig10334.705.1 ID=mRNA_M-pyrifera_M_contig10334.705.1|Name=mRNA_M-pyrifera_M_contig10334.705.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig10334:4027..5789- (Macrocystis pyrifera P11B4 male)
AAGGTGCGAGAGCGCCTTGGAGTGGTGGACGCAACAGTGGAGCTTTGGCT
ACGCCGGTCGGCGACCATGCTTTCGCGCGGTGGCTCGGAAACGGACACCG
ACATCCTGCAGAAGGTGCGAGAGCGCCTTGGAGTGGTGGACGCAACAGTG
GAGCTTTGGCTACGCCGGTCGGCGACCATGCTTTCGCGCGGTGGCTCGGA
AACGGACACCGACATCCTGCAGGCCAAGCGTAGGATCTACGGGCTGAAGG
ACGAGGGGCGGCAGCTGGATAGCGCCAGGGTTGCGCTCGGCGAGCGGCTG
GAGGACTGCCGCGCCAAGCTAGACCGGATCGTGCAGGCCAAGCGTAGGAT
CTACGGGCTGAAGGACGAGGGGCGGCAGCTGGATAGCGCCAGGGTTGCGC
TCGGCGAGCGGCTGGAGGACTGCCGCGCCAAGCTAGACCGGATCGTGCAG
GAACTCGAACTCCTCGGGGAAGATGCGGTGCCAGAACTCGAACTCCTCGG
GGAAGATGCGGTGCCA
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