mRNA_M-pyrifera_M_contig100296.69.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100296.69.1
Unique NamemRNA_M-pyrifera_M_contig100296.69.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: A0A7S0RM90_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RM90_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 8.250e-33
Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   13 IVIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            IVIKVGTSSL+  + + + L  +A + ETV TL   GHHVIIVSSGAVG GC +LGL +KP ++A  QALAA+GQ HLMR Y D  AA+ LRCAQVLLT  NLANR +
Sbjct:   45 IVIKVGTSSLVRAEQQTLNLGIIARLCETVKTLRSQGHHVIIVSSGAVGVGCQRLGLATKPGELAKKQALAAVGQLHLMRYYEDFMAALNLRCAQVLLTLDNLANRAQ 152          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: A0A250WWP4_9CHLO (AA_kinase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WWP4_9CHLO)

HSP 1 Score: 122 bits (307), Expect = 1.360e-32
Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 VMRQIVIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            V + IVIKVGTSSL++ + +R+ +  LA ++ETV  L   GHHV+IV+SGAVG GC +L L SKP  +A  QALAA+GQ HLM+ Y D   A+GL CAQVL+T  NLA+R +
Sbjct:   11 VPQVIVIKVGTSSLVNPEKQRLNISNLARIIETVKALRNMGHHVVIVTSGAVGVGCHRLRLASKPTQLAKKQALAAVGQVHLMKFYEDFLNAVGLTCAQVLVTLDNLADRGQ 122          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: A0A150GMC3_GONPE (PUA domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GMC3_GONPE)

HSP 1 Score: 126 bits (316), Expect = 4.020e-32
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   16 VIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            VIKVGTSSL+  + + + L  LA + ETV  L   GHHVIIV+SGAVG GC +LGL +KP  +A  QALAA+GQ HLM+ Y D FAA+GL CAQVLLT  NLANR +
Sbjct:   31 VIKVGTSSLVRPEQQTLNLTNLARICETVKLLKHEGHHVIIVTSGAVGVGCQRLGLTTKPSVLAKKQALAAVGQVHLMKFYEDFFAALGLTCAQVLLTLDNLANRSQ 137          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: A0A0D2K4C0_9CHLO (Glutamate 5-kinase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2K4C0_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 4.390e-32
Identity = 62/107 (57.94%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   16 VIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            VIK+GTSSLI++    + L  LA V E +  LH  GH VI+VSSGAVG GC +LGL  +P  +A  QALAA+GQ HLMR Y D F A+GL CAQVLLT  NLA+R +
Sbjct:    7 VIKIGTSSLINEGFHSLNLSNLARVCEVIKQLHNEGHFVILVSSGAVGVGCQRLGLTVRPTKLAQKQALAAVGQVHLMRYYQDFFQALGLTCAQVLLTLENLADRSQ 113          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: A0A7S0RLR4_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RLR4_9CHLO)

HSP 1 Score: 125 bits (315), Expect = 5.120e-32
Identity = 64/108 (59.26%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   13 IVIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            IVIKVGTSSL+  + + + L  LA + ETV +LH  GHHVI+VSSGAVG GC +LGL  +P   A  QALAA+GQ HLMR Y D+ A++ +RCAQVLLT  NLANR +
Sbjct:   32 IVIKVGTSSLLRPELESLNLGNLARLCETVKSLHALGHHVIVVSSGAVGVGCQRLGLAHRPSCSAKKQALAAIGQVHLMRHYEDLLASLNVRCAQVLLTLDNLANRAQ 139          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: C1MP26_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MP26_MICPC)

HSP 1 Score: 124 bits (310), Expect = 5.160e-32
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   13 IVIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            +V+KVGTSSL+ D    + L Q+ ++ ETV  LH+ G +V+IVSSGAVG G  ++G + KPK+VA  QALAA+GQ HLMR Y D+F+ IGL+CAQVLLT GNL++R++
Sbjct:    2 VVVKVGTSSLLRDGV--LHLSQICAMCETVSRLHKRGLNVVIVSSGAVGAGMFKMGFDEKPKEVAKKQALAAVGQVHLMRHYEDIFSTIGLKCAQVLLTLGNLSDRKQ 107          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: D8TY74_VOLCA (PUA domain-containing protein (Fragment) n=3 Tax=Volvox TaxID=3066 RepID=D8TY74_VOLCA)

HSP 1 Score: 124 bits (310), Expect = 7.880e-32
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 1
Query:   16 VIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            VIKVGTSSL+  + + + L  LA + ETV  L   GHHVI+V+SGAVG GC +LGL +KP  +A  QALAA+GQ HLM+ Y D  AA+GL CAQVLLT  NLANR +
Sbjct:    1 VIKVGTSSLVRPEQQTLNLTNLARICETVKLLKSEGHHVIVVTSGAVGVGCQRLGLTTKPSVLAKKQALAAVGQVHLMKYYEDFLAALGLTCAQVLLTLDNLANRSQ 107          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: A0A2K3CPA9_CHLRE (PUA domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3CPA9_CHLRE)

HSP 1 Score: 125 bits (314), Expect = 1.010e-31
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   16 VIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            VIKVGTSSL+  + + + L  LA + ET+  L + GHHV+IV+SGAVG GC +LGL +KP  +A  QALAA+GQ HLM+ Y D  AA+GL CAQVLLT  NLANR +
Sbjct:   29 VIKVGTSSLVRPEQQTLNLTNLARICETIKALKKMGHHVVIVTSGAVGVGCQRLGLATKPSQLAKKQALAAVGQVHLMKFYEDFLAALGLTCAQVLLTLDNLANRSQ 135          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: A0A2V0PI91_9CHLO (Glutamate 5-kinase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PI91_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 1.050e-31
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   13 IVIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            IVIK+GTSSLIH +   + L  LA + E +  LH  GH+VI+VSSGA+G GC +LGL  KP  +A  QALAA+GQ HLMR Y D F A+GL CAQVLLT  NLA+R +
Sbjct:   31 IVIKIGTSSLIHSEYHSLHLANLARLCEVIKQLHVMGHYVILVSSGAIGVGCQRLGLSVKPTRIAQKQALAAVGQVHLMRYYEDFFQALGLTCAQVLLTLDNLADRSQ 138          
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Match: A0A7S0SJY7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJY7_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 1.570e-31
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   13 IVIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGAVGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVLLTYGNLANRRE 336
            +VIKVGTSSL+  +   + L Q+ ++ ETV  LH  G  V++VSSGAVG G  ++GL  KPK+VA  QALAA+GQ HLMR Y D+F  +G++CAQVLLT  NL+NR++
Sbjct:   17 VVIKVGTSSLLRANAGTLHLSQICTLCETVSRLHARGIRVVLVSSGAVGAGMFRMGLTEKPKEVAKKQALAAVGQVHLMRYYEDIFNTLGVKCAQVLLTLENLSNRKQ 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100296.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0RM90_9CHLO8.250e-3362.04Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A250WWP4_9CHLO1.360e-3255.36AA_kinase domain-containing protein n=1 Tax=Chlamy... [more]
A0A150GMC3_GONPE4.020e-3260.75PUA domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A0D2K4C0_9CHLO4.390e-3257.94Glutamate 5-kinase n=1 Tax=Monoraphidium neglectum... [more]
A0A7S0RLR4_9CHLO5.120e-3259.26Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
C1MP26_MICPC5.160e-3256.48Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
D8TY74_VOLCA7.880e-3258.88PUA domain-containing protein (Fragment) n=3 Tax=V... [more]
A0A2K3CPA9_CHLRE1.010e-3157.94PUA domain-containing protein n=3 Tax=Chlamydomona... [more]
A0A2V0PI91_9CHLO1.050e-3158.33Glutamate 5-kinase n=1 Tax=Raphidocelis subcapitat... [more]
A0A7S0SJY7_9CHLO1.570e-3154.63Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100296contigM-pyrifera_M_contig100296:285..629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score125.9
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog38833.XP_003057212.1
KEGG rclassRC00002,RC00043
KEGG koko:K00931
KEGG ReactionR00239
KEGG Pathwayko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230
KEGG ModuleM00015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutamate 5-kinase
EggNOG OGs34H7A@3041,37TC5@33090,COG0263@1,KOG1154@2759
EC2.7.2.11
COG Functional cat.E
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size345
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.8168497-UTR-M-pyrifera_M_contig100296:284..2871622815498.8168497-UTR-M-pyrifera_M_contig100296:284..287Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100296 285..287 +
1692277439.085389-UTR-M-pyrifera_M_contig100296:284..2871692277439.085389-UTR-M-pyrifera_M_contig100296:284..287Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100296 285..287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.8306212-CDS-M-pyrifera_M_contig100296:287..6291622815498.8306212-CDS-M-pyrifera_M_contig100296:287..629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100296 288..629 +
1692277439.0972838-CDS-M-pyrifera_M_contig100296:287..6291692277439.0972838-CDS-M-pyrifera_M_contig100296:287..629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100296 288..629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100296.69.1prot_M-pyrifera_M_contig100296.69.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100296 288..629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100296.69.1

>prot_M-pyrifera_M_contig100296.69.1 ID=prot_M-pyrifera_M_contig100296.69.1|Name=mRNA_M-pyrifera_M_contig100296.69.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MRQIVIKVGTSSLIHDDGKRIALRQLASVVETVGTLHRAGHHVIIVSSGA
VGFGCLQLGLESKPKDVASLQALAALGQAHLMRQYSDMFAAIGLRCAQVL
LTYGNLANRREVRA
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mRNA from alignment at M-pyrifera_M_contig100296:285..629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100296.69.1 ID=mRNA_M-pyrifera_M_contig100296.69.1|Name=mRNA_M-pyrifera_M_contig100296.69.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig100296:285..629+ (Macrocystis pyrifera P11B4 male)
GTGATGCGTCAGATTGTCATAAAAGTGGGCACATCTAGTCTGATTCATGA CGATGGCAAGCGCATCGCGCTGCGACAGCTCGCGTCTGTGGTGGAGACTG TTGGAACGCTGCACCGCGCGGGGCACCACGTCATCATCGTCTCGTCCGGC GCTGTTGGATTTGGCTGTTTGCAGTTGGGCCTAGAGTCCAAGCCGAAGGA CGTGGCGAGCTTGCAGGCGCTGGCAGCGCTGGGTCAGGCGCACCTGATGC GACAGTACTCGGACATGTTCGCTGCCATCGGCCTGCGCTGCGCCCAGGTA TTGCTCACCTACGGAAACCTCGCCAATCGTCGAGAGGTACGCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100296:285..629+

>mRNA_M-pyrifera_M_contig100296.69.1 ID=mRNA_M-pyrifera_M_contig100296.69.1|Name=mRNA_M-pyrifera_M_contig100296.69.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig100296:285..629+ (Macrocystis pyrifera P11B4 male)
ATGCGTCAGATTGTCATAAAAGTGGGCACATCTAGTCTGATTCATGACGA
TGGCAAGCGCATCGCGCTGCGACAGCTCGCGTCTGTGGTGGAGACTGTTG
GAACGCTGCACCGCGCGGGGCACCACGTCATCATCGTCTCGTCCGGCGCT
GTTGGATTTGGCTGTTTGCAGTTGGGCCTAGAGTCCAAGCCGAAGGACGT
GGCGAGCTTGCAGGCGCTGGCAGCGCTGGGTCAGGCGCACCTGATGCGAC
AGTACTCGGACATGTTCGCTGCCATCGGCCTGCGCTGCGCCCAGGTATTG
CTCACCTACGGAAACCTCGCCAATCGTCGAGAGGTACGCGCGATGCGTCA
GATTGTCATAAAAGTGGGCACATCTAGTCTGATTCATGACGATGGCAAGC
GCATCGCGCTGCGACAGCTCGCGTCTGTGGTGGAGACTGTTGGAACGCTG
CACCGCGCGGGGCACCACGTCATCATCGTCTCGTCCGGCGCTGTTGGATT
TGGCTGTTTGCAGTTGGGCCTAGAGTCCAAGCCGAAGGACGTGGCGAGCT
TGCAGGCGCTGGCAGCGCTGGGTCAGGCGCACCTGATGCGACAGTACTCG
GACATGTTCGCTGCCATCGGCCTGCGCTGCGCCCAGGTATTGCTCACCTA
CGGAAACCTCGCCAATCGTCGAGAGGTACGCGCG
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