prot_M-pyrifera_M_contig103148.659.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig103148.659.1
Unique Nameprot_M-pyrifera_M_contig103148.659.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length218
Homology
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A2E3MHP9_9GAMM (Beta sliding clamp n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MHP9_9GAMM)

HSP 1 Score: 196 bits (499), Expect = 3.560e-58
Identity = 103/217 (47.47%), Postives = 137/217 (63.13%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQ 217
            GRK +DIC+ LP +  V ++ + Q+VTLK+   R+TL+T+  EEFP +E +    EF + QN LK+ +E   +AMAQQDVRYYLNGMLW+V  G    VA DGHR A A   +  G +E  +V+ P KG+ EL RLLE SD+   V    NHL +  DS  F  KLIDG FPDY+ +L   G N L+ D E +KQ L R ++L +E+   VR +LSQ
Sbjct:   72 GRKLVDICRSLPDEAEVSLTLDKQQVTLKSGRSRFTLSTLPAEEFPFVEGEAANAEFNLPQNLLKEHIEHIQFAMAQQDVRYYLNGMLWQVGNGKFTNVATDGHRLALAEHSLDLGLSELCQVIVPRKGIIELGRLLEVSDDHVTVKIGTNHLIIDADSFTFTSKLIDGRFPDYQKVLPKAGNNILICDKEVIKQALVRASVLTNEKYRGVRFELSQ 288          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: UPI0004866BBC (DNA polymerase III subunit beta n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI0004866BBC)

HSP 1 Score: 193 bits (491), Expect = 5.620e-57
Identity = 93/218 (42.66%), Postives = 143/218 (65.60%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 218
             RK +DICK LP +  +E++ + QK  +K+   R++L+T+   EFPN+EE    LE  + Q++L++L++KT ++MAQQDVRYYLNGML E+  G L  V+ DGHR A    ++ + N+ N++V+ P KG+ EL RLL+  D+P  +   ANH+   +    F  KL+DG FPDY+ ++   G   ++ D ++L+QV SR+AIL++E+   VRL LS G
Sbjct:   72 ARKLMDICKSLPDESRIELTLSGQKAIIKSGRSRFSLSTLPAAEFPNVEESPETLELSMLQSQLRQLIDKTGFSMAQQDVRYYLNGMLLEIANGQLRSVSTDGHRLATCVSEVQADNSLNHQVIVPRKGILELARLLQGGDDPVRLVIGANHVRAHVGDFIFTSKLVDGKFPDYQRVIPRNGDKFMLGDRQELRQVFSRIAILSNEKYRGVRLTLSNG 289          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A3D4UB52_9GAMM (Beta sliding clamp n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A3D4UB52_9GAMM)

HSP 1 Score: 193 bits (490), Expect = 7.930e-57
Identity = 100/216 (46.30%), Postives = 137/216 (63.43%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLS 216
             RK LDICK LP+   +E+  + QK+ LK+   R+TLAT+   EFPN+EE      F I Q  LKKL++KT +AMAQQDVRYYLNGML+EV AG L  VA DGHR A    +  +   E  +V+ P KGV EL RLL   D    +T  +NH+  T+ ++ F  KLIDG FPDY+ +L   G  +++ + E+L+  L+R AIL++E+   +RL L+
Sbjct:   72 ARKLLDICKSLPASAEIELKQDGQKLVLKSGKSRFTLATLPANEFPNLEEGVGAFSFSITQKGLKKLIDKTSFAMAQQDVRYYLNGMLFEVTAGRLRTVATDGHRLAMCDAEAQTDAVERMQVIVPRKGVQELARLLNDDDGIVTITLGSNHIRATVGNVTFTSKLIDGKFPDYERVLPKGGDKTVLANREELRHSLTRAAILSNEKFRGIRLQLT 287          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A8J7FFS9_9GAMM (Beta sliding clamp n=1 Tax=Pontibacterium sp. N1Y112 TaxID=2781979 RepID=A0A8J7FFS9_9GAMM)

HSP 1 Score: 192 bits (488), Expect = 1.580e-56
Identity = 93/218 (42.66%), Postives = 140/218 (64.22%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 218
             RK +DICK LP +  +E++ + QK+ +KT   R+TL+T+   EFPN+E+    L+  I+QN+L+KL++KT ++MAQQDVRYYLNGML E+  G L  V+ DGHR A     +    +  ++++ P KG+ EL RLL+  DEP  +   A H+   +    F  KL+DG FPDY+ ++   G   ++ D ++L+QV SR+AIL++E+   VRL LS G
Sbjct:   72 ARKLMDICKSLPDEARIELALSGQKMVIKTGRSRFTLSTLPAAEFPNVEDGPETLDLTISQNQLRKLIDKTGFSMAQQDVRYYLNGMLLEIANGQLRSVSTDGHRLATCVSDVEVDESVQHQIIVPRKGILELARLLQQGDEPLRLVIGATHIRAHVGDFIFTSKLVDGKFPDYQRVIPRNGDKIMLGDRQELRQVFSRIAILSNEKYRGVRLSLSDG 289          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A1Y6BQ04_9ALTE (Beta sliding clamp n=1 Tax=Alteromonadaceae bacterium Bs31 TaxID=1304903 RepID=A0A1Y6BQ04_9ALTE)

HSP 1 Score: 190 bits (483), Expect = 8.840e-56
Identity = 97/218 (44.50%), Postives = 140/218 (64.22%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 218
             +KFLDIC+ LP   N+E S  +QKVT+K+   R+TL+T+   EFP +E+    L F   Q E+K+L+++T +AMAQQDVRYYLNGMLWEV + +L VVA DGHR A   + ++    +  + + P KGV EL+RLL  SDE   V+  ++H+  T     F  KL+DG FPDY+ +L   G   ++ D  +LKQ  +R +IL++E+   VRL+L +G
Sbjct:   72 AKKFLDICRALPDDSNIEFSLKDQKVTVKSGRTRFTLSTLPGNEFPAVEQGSNDLSFSSEQKEVKRLIDRTSFAMAQQDVRYYLNGMLWEVRSQELRVVATDGHRLAMCTRPVNVEIADLRQAILPRKGVIELSRLLNDSDENVEVSLGSSHIRATTSEYTFTSKLVDGKFPDYERVLPKGGDKFVIGDRAELKQAFARTSILSNEKYRGVRLELEEG 289          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A2A5HU92_9ALTE (Beta sliding clamp n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2A5HU92_9ALTE)

HSP 1 Score: 190 bits (483), Expect = 8.840e-56
Identity = 99/213 (46.48%), Postives = 136/213 (63.85%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRL 213
             +KFLDIC+ LP    +  S + QKVT+K++  R++L+T+ P EFP++E     L F  AQ E+K+L+EKT +AMAQQDVRYYLNGMLWE   G+L VVA DGHR A   + I+    EN + + P KGV EL+RL+E SDE   +   ANH+     S  F  KL+DG FPDY+ +L   G   ++ D E L+   +R AIL++E+   VR+
Sbjct:   72 AKKFLDICRALPDGAVINFSLDEQKVTVKSARSRFSLSTLPPSEFPSVEGGDNDLSFSCAQREIKRLIEKTSFAMAQQDVRYYLNGMLWEARNGELRVVATDGHRLAMCTRPINLELAENRQSILPRKGVIELSRLMEDSDELVEIVLGANHIRALTKSYLFTSKLVDGNFPDYQRVLPVGGDKEIIGDREVLRHAFTRTAILSNEKYRGVRI 284          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A2A4W8A3_9GAMM (Beta sliding clamp n=2 Tax=root TaxID=1 RepID=A0A2A4W8A3_9GAMM)

HSP 1 Score: 190 bits (482), Expect = 1.310e-55
Identity = 94/218 (43.12%), Postives = 140/218 (64.22%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 218
             RKF+DICK LP   ++ ++ +  +  ++    R+ L+T+ P++FP I+ +K +LEF + Q ELK+ +E+T +AMA QDVRYYLNGML E+ +  L +VA DGHR A       S  NE+ +V+ P KGV E+ RLLE +D  A +   +N++ VT D + F  KLIDG FPDY+ +L   G   ++ +  +LKQ LSR++IL++E+   VRL  S G
Sbjct:   74 ARKFMDICKALPDGVDINLTIDGDRAIVRAGKSRFVLSTLPPDDFPGIDANKDILEFSMPQIELKQAIERTQFAMAHQDVRYYLNGMLLEISSNALRLVATDGHRLALCDHSFESPQNESQQVIVPRKGVMEIARLLEDTDSIAKIQMGSNYIRVTTDGVTFTSKLIDGRFPDYQNVLPEGGDKIVICNKSELKQALSRVSILSNEKYRGVRLQFSNG 291          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: UPI001A8C7376 (DNA polymerase III subunit beta n=1 Tax=Motiliproteus sp. SC1-56 TaxID=2799565 RepID=UPI001A8C7376)

HSP 1 Score: 189 bits (479), Expect = 3.510e-55
Identity = 97/218 (44.50%), Postives = 141/218 (64.68%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 218
             +K +DICK LP   ++E++   QKVT+K    R+TLAT+   EFPN+E+    LE  I Q++L+ L+E+T +AMAQQDVRYYLNGML E+    L  VA DGHR A +   + +  ++  +V+ P KG+ EL RLLE SD+ A +   ++H+ V   +  F  KL+DG FPDY+ ++   G   L+ D ++L+ VLSR+AIL++E+   VRL LS G
Sbjct:   72 AKKLMDICKSLPDHVDIELTLTGQKVTIKGGRSRFTLATLPAAEFPNVEDGPENLEIGIPQDKLRHLIERTSFAMAQQDVRYYLNGMLLELEGTRLRTVATDGHRLATSICDVEAQIDQKQQVIVPRKGILELGRLLEDSDKEARLVVGSSHIRVNTGTFIFTSKLVDGKFPDYERVIPRGGDKLLIADRQELRSVLSRIAILSNEKYRGVRLALSDG 289          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A1R1MIJ5_9GAMM (Beta sliding clamp n=1 Tax=Motiliproteus sp. MSK22-1 TaxID=1897630 RepID=A0A1R1MIJ5_9GAMM)

HSP 1 Score: 189 bits (479), Expect = 3.600e-55
Identity = 97/218 (44.50%), Postives = 138/218 (63.30%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 218
             +K +DICK LP   +VE++   QKVT+K    R+TLAT+   EFPNIE+    LE  I Q +L+ L+E+T +AMAQQDVRYYLNGML E+    L  VA DGHR A +   +    +   +V+ P KG+ EL RLLE SD  A +   +NH+ V      F  KL+DG FPDY+ ++   G   ++ + ++L+QVLSR++IL++E+   VRL L++G
Sbjct:   72 AKKLMDICKSLPDHVDVELTLTGQKVTIKGGRSRFTLATLPASEFPNIEDGPRTLEIPIPQGKLRHLIERTGFAMAQQDVRYYLNGMLLELDGSQLRTVATDGHRLATSICSVEQELSVKQQVIVPRKGILELARLLEDSDNEAQLVIGSNHIRVNTGDYVFTSKLVDGKFPDYERVIPRGGDKQIIANRQELRQVLSRISILSNEKYRGVRLALTEG 289          
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A523KNH2_9GAMM (Beta sliding clamp n=2 Tax=Bacteria TaxID=2 RepID=A0A523KNH2_9GAMM)

HSP 1 Score: 187 bits (476), Expect = 9.600e-55
Identity = 94/218 (43.12%), Postives = 140/218 (64.22%), Query Frame = 0
Query:    1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 218
             RK LDICK LP +  +E    + +V L ++  R+TL+++  ++FP +++   L  F+I Q + K LLE T +AMAQQDVRYYLNG+L E+    L +VA DGHR A +  KIS   +E  +++ P K V EL+RLL+P+D  A +    NH+ V + ++ F  KLIDG FPDY  ++   G  +LV+D E LK+ +SR+AIL++E+   +RL L+ G
Sbjct:   71 ARKLLDICKALPDESEIEFDIEDNRVLLTSARSRFTLSSLPGKDFPGLDDIDELQSFEIPQGKFKSLLENTAFAMAQQDVRYYLNGILMEISPDQLKLVATDGHRLALSEYKISISIDEAKQIIIPRKAVLELSRLLQPNDRKAKIILSQNHIRVEIGTLVFTSKLIDGKFPDYNRVIPVDGNKTLVVDRESLKRAMSRIAILSNEKYRGIRLTLTSG 288          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3MHP9_9GAMM3.560e-5847.47Beta sliding clamp n=1 Tax=Legionellales bacterium... [more]
UPI0004866BBC5.620e-5742.66DNA polymerase III subunit beta n=1 Tax=Marinobact... [more]
A0A3D4UB52_9GAMM7.930e-5746.30Beta sliding clamp n=1 Tax=Moraxellaceae bacterium... [more]
A0A8J7FFS9_9GAMM1.580e-5642.66Beta sliding clamp n=1 Tax=Pontibacterium sp. N1Y1... [more]
A0A1Y6BQ04_9ALTE8.840e-5644.50Beta sliding clamp n=1 Tax=Alteromonadaceae bacter... [more]
A0A2A5HU92_9ALTE8.840e-5646.48Beta sliding clamp n=1 Tax=Alteromonadaceae bacter... [more]
A0A2A4W8A3_9GAMM1.310e-5543.12Beta sliding clamp n=2 Tax=root TaxID=1 RepID=A0A2... [more]
UPI001A8C73763.510e-5544.50DNA polymerase III subunit beta n=1 Tax=Motiliprot... [more]
A0A1R1MIJ5_9GAMM3.600e-5544.50Beta sliding clamp n=1 Tax=Motiliproteus sp. MSK22... [more]
A0A523KNH2_9GAMM9.600e-5543.12Beta sliding clamp n=2 Tax=Bacteria TaxID=2 RepID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001001DNA polymerase III, beta sliding clampSMARTSM00480pol35coord: 1..217
e-value: 1.8E-9
score: 18.5
IPR001001DNA polymerase III, beta sliding clampTIGRFAMTIGR00663TIGR00663coord: 1..217
e-value: 3.6E-51
score: 172.2
IPR001001DNA polymerase III, beta sliding clampPANTHERPTHR30478DNA POLYMERASE III SUBUNIT BETAcoord: 1..218
IPR022637DNA polymerase III, beta sliding clamp, centralPFAMPF02767DNA_pol3_beta_2coord: 58..173
e-value: 6.6E-28
score: 97.3
NoneNo IPR availableGENE3D3.10.150.10coord: 1..52
e-value: 5.8E-11
score: 44.3
NoneNo IPR availableGENE3D3.10.150.10coord: 54..176
e-value: 2.2E-29
score: 104.1
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 56..174
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 2..49
IPR022634DNA polymerase III, beta sliding clamp, N-terminalPFAMPF00712DNA_pol3_betacoord: 1..48
e-value: 1.1E-9
score: 38.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103148contigM-pyrifera_M_contig103148:2..655 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103148.659.1mRNA_M-pyrifera_M_contig103148.659.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig103148 2..655 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig103148.659.1 ID=prot_M-pyrifera_M_contig103148.659.1|Name=mRNA_M-pyrifera_M_contig103148.659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEE
DKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVA
MDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCA
NHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRL
AILASEQDNAVRLDLSQG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001001DNA_polIII_beta
IPR022637DNA_polIII_beta_cen
IPR022634DNA_polIII_beta_N