mRNA_M-pyrifera_M_contig103148.659.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A2E3MHP9_9GAMM (Beta sliding clamp n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MHP9_9GAMM) HSP 1 Score: 196 bits (499), Expect = 3.560e-58 Identity = 103/217 (47.47%), Postives = 137/217 (63.13%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQ 651 GRK +DIC+ LP + V ++ + Q+VTLK+ R+TL+T+ EEFP +E + EF + QN LK+ +E +AMAQQDVRYYLNGMLW+V G VA DGHR A A + G +E +V+ P KG+ EL RLLE SD+ V NHL + DS F KLIDG FPDY+ +L G N L+ D E +KQ L R ++L +E+ VR +LSQ Sbjct: 72 GRKLVDICRSLPDEAEVSLTLDKQQVTLKSGRSRFTLSTLPAEEFPFVEGEAANAEFNLPQNLLKEHIEHIQFAMAQQDVRYYLNGMLWQVGNGKFTNVATDGHRLALAEHSLDLGLSELCQVIVPRKGIIELGRLLEVSDDHVTVKIGTNHLIIDADSFTFTSKLIDGRFPDYQKVLPKAGNNILICDKEVIKQALVRASVLTNEKYRGVRFELSQ 288
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: UPI0004866BBC (DNA polymerase III subunit beta n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI0004866BBC) HSP 1 Score: 193 bits (491), Expect = 5.620e-57 Identity = 93/218 (42.66%), Postives = 143/218 (65.60%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 654 RK +DICK LP + +E++ + QK +K+ R++L+T+ EFPN+EE LE + Q++L++L++KT ++MAQQDVRYYLNGML E+ G L V+ DGHR A ++ + N+ N++V+ P KG+ EL RLL+ D+P + ANH+ + F KL+DG FPDY+ ++ G ++ D ++L+QV SR+AIL++E+ VRL LS G Sbjct: 72 ARKLMDICKSLPDESRIELTLSGQKAIIKSGRSRFSLSTLPAAEFPNVEESPETLELSMLQSQLRQLIDKTGFSMAQQDVRYYLNGMLLEIANGQLRSVSTDGHRLATCVSEVQADNSLNHQVIVPRKGILELARLLQGGDDPVRLVIGANHVRAHVGDFIFTSKLVDGKFPDYQRVIPRNGDKFMLGDRQELRQVFSRIAILSNEKYRGVRLTLSNG 289
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A3D4UB52_9GAMM (Beta sliding clamp n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A3D4UB52_9GAMM) HSP 1 Score: 193 bits (490), Expect = 7.930e-57 Identity = 100/216 (46.30%), Postives = 137/216 (63.43%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLS 648 RK LDICK LP+ +E+ + QK+ LK+ R+TLAT+ EFPN+EE F I Q LKKL++KT +AMAQQDVRYYLNGML+EV AG L VA DGHR A + + E +V+ P KGV EL RLL D +T +NH+ T+ ++ F KLIDG FPDY+ +L G +++ + E+L+ L+R AIL++E+ +RL L+ Sbjct: 72 ARKLLDICKSLPASAEIELKQDGQKLVLKSGKSRFTLATLPANEFPNLEEGVGAFSFSITQKGLKKLIDKTSFAMAQQDVRYYLNGMLFEVTAGRLRTVATDGHRLAMCDAEAQTDAVERMQVIVPRKGVQELARLLNDDDGIVTITLGSNHIRATVGNVTFTSKLIDGKFPDYERVLPKGGDKTVLANREELRHSLTRAAILSNEKFRGIRLQLT 287
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A8J7FFS9_9GAMM (Beta sliding clamp n=1 Tax=Pontibacterium sp. N1Y112 TaxID=2781979 RepID=A0A8J7FFS9_9GAMM) HSP 1 Score: 192 bits (488), Expect = 1.580e-56 Identity = 93/218 (42.66%), Postives = 140/218 (64.22%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 654 RK +DICK LP + +E++ + QK+ +KT R+TL+T+ EFPN+E+ L+ I+QN+L+KL++KT ++MAQQDVRYYLNGML E+ G L V+ DGHR A + + ++++ P KG+ EL RLL+ DEP + A H+ + F KL+DG FPDY+ ++ G ++ D ++L+QV SR+AIL++E+ VRL LS G Sbjct: 72 ARKLMDICKSLPDEARIELALSGQKMVIKTGRSRFTLSTLPAAEFPNVEDGPETLDLTISQNQLRKLIDKTGFSMAQQDVRYYLNGMLLEIANGQLRSVSTDGHRLATCVSDVEVDESVQHQIIVPRKGILELARLLQQGDEPLRLVIGATHIRAHVGDFIFTSKLVDGKFPDYQRVIPRNGDKIMLGDRQELRQVFSRIAILSNEKYRGVRLSLSDG 289
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A1Y6BQ04_9ALTE (Beta sliding clamp n=1 Tax=Alteromonadaceae bacterium Bs31 TaxID=1304903 RepID=A0A1Y6BQ04_9ALTE) HSP 1 Score: 190 bits (483), Expect = 8.840e-56 Identity = 97/218 (44.50%), Postives = 140/218 (64.22%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 654 +KFLDIC+ LP N+E S +QKVT+K+ R+TL+T+ EFP +E+ L F Q E+K+L+++T +AMAQQDVRYYLNGMLWEV + +L VVA DGHR A + ++ + + + P KGV EL+RLL SDE V+ ++H+ T F KL+DG FPDY+ +L G ++ D +LKQ +R +IL++E+ VRL+L +G Sbjct: 72 AKKFLDICRALPDDSNIEFSLKDQKVTVKSGRTRFTLSTLPGNEFPAVEQGSNDLSFSSEQKEVKRLIDRTSFAMAQQDVRYYLNGMLWEVRSQELRVVATDGHRLAMCTRPVNVEIADLRQAILPRKGVIELSRLLNDSDENVEVSLGSSHIRATTSEYTFTSKLVDGKFPDYERVLPKGGDKFVIGDRAELKQAFARTSILSNEKYRGVRLELEEG 289
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A2A5HU92_9ALTE (Beta sliding clamp n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2A5HU92_9ALTE) HSP 1 Score: 190 bits (483), Expect = 8.840e-56 Identity = 99/213 (46.48%), Postives = 136/213 (63.85%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRL 639 +KFLDIC+ LP + S + QKVT+K++ R++L+T+ P EFP++E L F AQ E+K+L+EKT +AMAQQDVRYYLNGMLWE G+L VVA DGHR A + I+ EN + + P KGV EL+RL+E SDE + ANH+ S F KL+DG FPDY+ +L G ++ D E L+ +R AIL++E+ VR+ Sbjct: 72 AKKFLDICRALPDGAVINFSLDEQKVTVKSARSRFSLSTLPPSEFPSVEGGDNDLSFSCAQREIKRLIEKTSFAMAQQDVRYYLNGMLWEARNGELRVVATDGHRLAMCTRPINLELAENRQSILPRKGVIELSRLMEDSDELVEIVLGANHIRALTKSYLFTSKLVDGNFPDYQRVLPVGGDKEIIGDREVLRHAFTRTAILSNEKYRGVRI 284
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A2A4W8A3_9GAMM (Beta sliding clamp n=2 Tax=root TaxID=1 RepID=A0A2A4W8A3_9GAMM) HSP 1 Score: 190 bits (482), Expect = 1.310e-55 Identity = 94/218 (43.12%), Postives = 140/218 (64.22%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 654 RKF+DICK LP ++ ++ + + ++ R+ L+T+ P++FP I+ +K +LEF + Q ELK+ +E+T +AMA QDVRYYLNGML E+ + L +VA DGHR A S NE+ +V+ P KGV E+ RLLE +D A + +N++ VT D + F KLIDG FPDY+ +L G ++ + +LKQ LSR++IL++E+ VRL S G Sbjct: 74 ARKFMDICKALPDGVDINLTIDGDRAIVRAGKSRFVLSTLPPDDFPGIDANKDILEFSMPQIELKQAIERTQFAMAHQDVRYYLNGMLLEISSNALRLVATDGHRLALCDHSFESPQNESQQVIVPRKGVMEIARLLEDTDSIAKIQMGSNYIRVTTDGVTFTSKLIDGRFPDYQNVLPEGGDKIVICNKSELKQALSRVSILSNEKYRGVRLQFSNG 291
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: UPI001A8C7376 (DNA polymerase III subunit beta n=1 Tax=Motiliproteus sp. SC1-56 TaxID=2799565 RepID=UPI001A8C7376) HSP 1 Score: 189 bits (479), Expect = 3.510e-55 Identity = 97/218 (44.50%), Postives = 141/218 (64.68%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 654 +K +DICK LP ++E++ QKVT+K R+TLAT+ EFPN+E+ LE I Q++L+ L+E+T +AMAQQDVRYYLNGML E+ L VA DGHR A + + + ++ +V+ P KG+ EL RLLE SD+ A + ++H+ V + F KL+DG FPDY+ ++ G L+ D ++L+ VLSR+AIL++E+ VRL LS G Sbjct: 72 AKKLMDICKSLPDHVDIELTLTGQKVTIKGGRSRFTLATLPAAEFPNVEDGPENLEIGIPQDKLRHLIERTSFAMAQQDVRYYLNGMLLELEGTRLRTVATDGHRLATSICDVEAQIDQKQQVIVPRKGILELGRLLEDSDKEARLVVGSSHIRVNTGTFIFTSKLVDGKFPDYERVIPRGGDKLLIADRQELRSVLSRIAILSNEKYRGVRLALSDG 289
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A1R1MIJ5_9GAMM (Beta sliding clamp n=1 Tax=Motiliproteus sp. MSK22-1 TaxID=1897630 RepID=A0A1R1MIJ5_9GAMM) HSP 1 Score: 189 bits (479), Expect = 3.600e-55 Identity = 97/218 (44.50%), Postives = 138/218 (63.30%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 654 +K +DICK LP +VE++ QKVT+K R+TLAT+ EFPNIE+ LE I Q +L+ L+E+T +AMAQQDVRYYLNGML E+ L VA DGHR A + + + +V+ P KG+ EL RLLE SD A + +NH+ V F KL+DG FPDY+ ++ G ++ + ++L+QVLSR++IL++E+ VRL L++G Sbjct: 72 AKKLMDICKSLPDHVDVELTLTGQKVTIKGGRSRFTLATLPASEFPNIEDGPRTLEIPIPQGKLRHLIERTGFAMAQQDVRYYLNGMLLELDGSQLRTVATDGHRLATSICSVEQELSVKQQVIVPRKGILELARLLEDSDNEAQLVIGSNHIRVNTGDYVFTSKLVDGKFPDYERVIPRGGDKQIIANRQELRQVLSRISILSNEKYRGVRLALTEG 289
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Match: A0A523KNH2_9GAMM (Beta sliding clamp n=2 Tax=Bacteria TaxID=2 RepID=A0A523KNH2_9GAMM) HSP 1 Score: 187 bits (476), Expect = 9.600e-55 Identity = 94/218 (43.12%), Postives = 140/218 (64.22%), Query Frame = 1 Query: 1 GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEDKPLLEFQIAQNELKKLLEKTHYAMAQQDVRYYLNGMLWEVLAGDLNVVAMDGHRFAHAFQKISSGNNENNKVLAPYKGVAELNRLLEPSDEPAMVTFCANHLSVTMDSINFRCKLIDGAFPDYKMLLRAVGKNSLVIDSEQLKQVLSRLAILASEQDNAVRLDLSQG 654 RK LDICK LP + +E + +V L ++ R+TL+++ ++FP +++ L F+I Q + K LLE T +AMAQQDVRYYLNG+L E+ L +VA DGHR A + KIS +E +++ P K V EL+RLL+P+D A + NH+ V + ++ F KLIDG FPDY ++ G +LV+D E LK+ +SR+AIL++E+ +RL L+ G Sbjct: 71 ARKLLDICKALPDESEIEFDIEDNRVLLTSARSRFTLSSLPGKDFPGLDDIDELQSFEIPQGKFKSLLENTAFAMAQQDVRYYLNGILMEISPDQLKLVATDGHRLALSEYKISISIDEAKQIIIPRKAVLELSRLLQPNDRKAKIILSQNHIRVEIGTLVFTSKLIDGKFPDYNRVIPVDGNKTLVVDRESLKRAMSRIAILSNEKYRGIRLTLTSG 288 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103148.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig103148.659.1 >prot_M-pyrifera_M_contig103148.659.1 ID=prot_M-pyrifera_M_contig103148.659.1|Name=mRNA_M-pyrifera_M_contig103148.659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp GRKFLDICKKLPSQENVEISHNNQKVTLKTSLGRYTLATIAPEEFPNIEEback to top mRNA from alignment at M-pyrifera_M_contig103148:2..655+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig103148.659.1 ID=mRNA_M-pyrifera_M_contig103148.659.1|Name=mRNA_M-pyrifera_M_contig103148.659.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig103148:2..655+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig103148:2..655+ >mRNA_M-pyrifera_M_contig103148.659.1 ID=mRNA_M-pyrifera_M_contig103148.659.1|Name=mRNA_M-pyrifera_M_contig103148.659.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig103148:2..655+ (Macrocystis pyrifera P11B4 male)back to top |