mRNA_M-pyrifera_M_contig102917.616.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102917.616.1
Unique NamemRNA_M-pyrifera_M_contig102917.616.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102917.616.1 vs. uniprot
Match: UPI000711F52D (GTPase-activating protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711F52D)

HSP 1 Score: 60.5 bits (145), Expect = 1.120e-9
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 DVDMVDDSKLKLPETKLEKVEQKA-DEDEEEVHVERAKLYRFVKEETYADEVRKNLWKERG 180
            D + V+D+KLKLP   ++KVE K+ +EDE+ ++ ERA+L+ F  E+ Y DEVRKN+WKERG
Sbjct:   10 DCETVEDAKLKLPTKVIDKVETKSGEEDEDLIYHERARLFLFFAEDKYGDEVRKNIWKERG 70
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BLAST of mRNA_M-pyrifera_M_contig102917.616.1 vs. uniprot
Match: A0A196SB90_BLAHN (E3 SUMO-protein ligase RanBP2 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SB90_BLAHN)

HSP 1 Score: 59.3 bits (142), Expect = 3.210e-9
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 DVDMVDDSKLKLPETKLEKVEQKADEDEEEVHV-ERAKLYRFVKEETYADEVRKNLWKERG 180
            D + V+DSKLKLPE  +  VE K  E+EE+V   ER++L+ F +E+ Y DEVRKN+WKERG
Sbjct:   10 DCENVEDSKLKLPEKAIAAVETKTGEEEEDVVFHERSRLFLFFEEDKYGDEVRKNIWKERG 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102917.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000711F52D1.120e-954.10GTPase-activating protein n=1 Tax=Blastocystis sp.... [more]
A0A196SB90_BLAHN3.210e-955.74E3 SUMO-protein ligase RanBP2 n=1 Tax=Blastocystis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102917contigM-pyrifera_M_contig102917:433..615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size174
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.656853-UTR-M-pyrifera_M_contig102917:432..4411622815533.656853-UTR-M-pyrifera_M_contig102917:432..441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102917 433..441 +
1692277452.7645166-UTR-M-pyrifera_M_contig102917:432..4411692277452.7645166-UTR-M-pyrifera_M_contig102917:432..441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102917 433..441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.6802013-CDS-M-pyrifera_M_contig102917:441..6151622815533.6802013-CDS-M-pyrifera_M_contig102917:441..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102917 442..615 +
1692277452.774513-CDS-M-pyrifera_M_contig102917:441..6151692277452.774513-CDS-M-pyrifera_M_contig102917:441..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102917 442..615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102917.616.1prot_M-pyrifera_M_contig102917.616.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102917 442..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102917.616.1

>prot_M-pyrifera_M_contig102917.616.1 ID=prot_M-pyrifera_M_contig102917.616.1|Name=mRNA_M-pyrifera_M_contig102917.616.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MVDDSKLKLPETKLEKVEQKADEDEEEVHVERAKLYRFVKEETYADEVRK
NLWKERG*
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mRNA from alignment at M-pyrifera_M_contig102917:433..615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102917.616.1 ID=mRNA_M-pyrifera_M_contig102917.616.1|Name=mRNA_M-pyrifera_M_contig102917.616.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig102917:433..615+ (Macrocystis pyrifera P11B4 male)
GATGTGGACATGGTCGATGACAGCAAGTTGAAGCTGCCGGAGACGAAGCT
GGAGAAGGTGGAGCAGAAGGCGGACGAGGACGAGGAAGAGGTCCACGTGG
AGCGTGCGAAGCTGTACCGGTTCGTGAAGGAAGAGACATACGCCGACGAA
GTGCGCAAGAACCTGTGGAAGGAGCGCGGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102917:433..615+

>mRNA_M-pyrifera_M_contig102917.616.1 ID=mRNA_M-pyrifera_M_contig102917.616.1|Name=mRNA_M-pyrifera_M_contig102917.616.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig102917:433..615+ (Macrocystis pyrifera P11B4 male)
ATGGTCGATGACAGCAAGTTGAAGCTGCCGGAGACGAAGCTGGAGAAGGT
GGAGCAGAAGGCGGACGAGGACGAGGAAGAGGTCCACGTGGAGCGTGCGA
AGCTGTACCGGTTCGTGAAGGAAGAGACATACGCCGACGAAGTGCGCAAG
AACCTGTGGAAGGAGCGCGGGTAGATGGTCGATGACAGCAAGTTGAAGCT
GCCGGAGACGAAGCTGGAGAAGGTGGAGCAGAAGGCGGACGAGGACGAGG
AAGAGGTCCACGTGGAGCGTGCGAAGCTGTACCGGTTCGTGAAGGAAGAG
ACATACGCCGACGAAGTGCGCAAGAACCTGTGGAAGGAGCGCGGGTAG
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