mRNA_M-pyrifera_M_contig13551.5995.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13551.5995.1
Unique NamemRNA_M-pyrifera_M_contig13551.5995.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13551.5995.1 vs. uniprot
Match: A0A6H5KVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.770e-12
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 VAVCLSGHVRSFVSPAVHLSVRRNVIEAIREGGCRVDVFAYAALDDTSTLTEQ 162
            VAV +SG VRSFV P VHLS +R+V+EAI+  GC VDVF YA+L D   L EQ
Sbjct:   40 VAVSISGDVRSFVDPVVHLSFQRHVVEAIKAEGCTVDVFVYASLGDEDLLEEQ 92
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BLAST of mRNA_M-pyrifera_M_contig13551.5995.1 vs. uniprot
Match: D7FK46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 8.690e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   10 VCLSGHVRSFVSPAVHLSVRRNVIEAIREGGCRVDVFAYAALDDTSTLTEQV 165
            +C SG +RSFV PAVH S+R N+IE+I+  GC VDVFAY   +DT    +QV
Sbjct:    1 MCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQV 52
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13551.5995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVJ6_9PHAE9.770e-1262.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK46_ECTSI8.690e-1155.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13551contigM-pyrifera_M_contig13551:640..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue6.9e-09
Seed eggNOG ortholog2880.D7G5E2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CY2I@1,2S1H1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.1392398-CDS-M-pyrifera_M_contig13551:639..8041622815820.1392398-CDS-M-pyrifera_M_contig13551:639..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13551 640..804 -
1692277587.5895262-CDS-M-pyrifera_M_contig13551:639..8041692277587.5895262-CDS-M-pyrifera_M_contig13551:639..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13551 640..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13551.5995.1prot_M-pyrifera_M_contig13551.5995.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13551 640..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13551.5995.1

>prot_M-pyrifera_M_contig13551.5995.1 ID=prot_M-pyrifera_M_contig13551.5995.1|Name=mRNA_M-pyrifera_M_contig13551.5995.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
RVAVCLSGHVRSFVSPAVHLSVRRNVIEAIREGGCRVDVFAYAALDDTST
LTEQV
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mRNA from alignment at M-pyrifera_M_contig13551:640..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13551.5995.1 ID=mRNA_M-pyrifera_M_contig13551.5995.1|Name=mRNA_M-pyrifera_M_contig13551.5995.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig13551:640..804- (Macrocystis pyrifera P11B4 male)
CGGGTAGCGGTGTGTCTATCCGGCCACGTACGATCCTTCGTGTCCCCCGC
GGTGCACCTGTCAGTTCGACGTAACGTGATCGAGGCCATCAGGGAGGGCG
GATGCAGGGTGGATGTGTTCGCCTATGCGGCACTGGACGACACTAGCACG
CTCACGGAGCAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13551:640..804-

>mRNA_M-pyrifera_M_contig13551.5995.1 ID=mRNA_M-pyrifera_M_contig13551.5995.1|Name=mRNA_M-pyrifera_M_contig13551.5995.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig13551:640..804- (Macrocystis pyrifera P11B4 male)
CGGGTAGCGGTGTGTCTATCCGGCCACGTACGATCCTTCGTGTCCCCCGC
GGTGCACCTGTCAGTTCGACGTAACGTGATCGAGGCCATCAGGGAGGGCG
GATGCAGGGTGGATGTGTTCGCCTATGCGGCACTGGACGACACTAGCACG
CTCACGGAGCAGGTGCGGGTAGCGGTGTGTCTATCCGGCCACGTACGATC
CTTCGTGTCCCCCGCGGTGCACCTGTCAGTTCGACGTAACGTGATCGAGG
CCATCAGGGAGGGCGGATGCAGGGTGGATGTGTTCGCCTATGCGGCACTG
GACGACACTAGCACGCTCACGGAGCAGGTG
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