mRNA_M-pyrifera_M_contig128526.5728.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128526.5728.1
Unique NamemRNA_M-pyrifera_M_contig128526.5728.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: A0A6H5JZ76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ76_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.630e-46
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            CS+SLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQ+ HHVFINLRTCRVYCLPDSYEVVDSSLEDI+RALDPRYSP  IAALD+
Sbjct:  105 CSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDK 188
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: A0A835Z9Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.720e-38
Identity = 65/83 (78.31%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 SVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            SV+LSN NVYACLVCGKYFQGRGR+THAYTHSVQHSHHVFI+L T ++YCLPD+YEVVDSSL+DI+RAL P Y+P  +AALD+
Sbjct:    9 SVTLSNQNVYACLVCGKYFQGRGRSTHAYTHSVQHSHHVFIHLETSKIYCLPDNYEVVDSSLDDIKRALFPSYAPRDMAALDR 91
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BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: A0A2P4XIN4_9STRA (U4/U6.U5 tri-snRNP-associated protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIN4_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.320e-36
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            CS+SLS+ NVYACLVCGKYF+GRGRNTHA+THSVQ SHHVFINL+T R+YCLPD+YEVVD++L+ +Q AL P +  A I  LDQ
Sbjct:   40 CSISLSDQNVYACLVCGKYFKGRGRNTHAFTHSVQSSHHVFINLQTDRIYCLPDNYEVVDNTLKPVQDALRPSFEAAQIVQLDQ 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: D0MZT9_PHYIT (U4/U6.U5 tri-snRNP-associated protein, putative n=7 Tax=Phytophthora TaxID=4783 RepID=D0MZT9_PHYIT)

HSP 1 Score: 134 bits (338), Expect = 1.440e-35
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            CS+SLS+ NVYACLVCGKYFQGRGRNTHA+THSVQ SHHVFINL+T R+YCLPD+YEVVD++L+ +Q AL PR+    IA LDQ
Sbjct:   49 CSISLSDQNVYACLVCGKYFQGRGRNTHAFTHSVQSSHHVFINLQTDRIYCLPDNYEVVDNTLKPVQDALRPRFEETQIAQLDQ 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: A0A833TV06_PHYIN (Ubiquitin carboxyl-terminal hydrolase domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=A0A833TV06_PHYIN)

HSP 1 Score: 134 bits (338), Expect = 1.960e-35
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            CS+SLS+ NVYACLVCGKYFQGRGRNTHA+THSVQ SHHVFINL+T R+YCLPD+YEVVD++L+ +Q AL PR+    IA LDQ
Sbjct:   49 CSISLSDQNVYACLVCGKYFQGRGRNTHAFTHSVQSSHHVFINLQTDRIYCLPDNYEVVDNTLKPVQDALRPRFEETQIAQLDQ 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: UPI000C71934E (U4/U6.U5 tri-snRNP-associated protein 2-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71934E)

HSP 1 Score: 134 bits (337), Expect = 2.020e-35
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            CSVSLS  NVYACLVCGKYFQGRG NTHAYTHSV  SHHVF+NL T + YCLPD+YE++DSSL+DI+R L+P YS A IA LD+
Sbjct:   54 CSVSLSRINVYACLVCGKYFQGRGNNTHAYTHSVSESHHVFLNLNTLKFYCLPDNYEIIDSSLKDIKRVLNPTYSDAKIADLDK 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: A0A813CGI0_9DINO (Usp39 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CGI0_9DINO)

HSP 1 Score: 127 bits (318), Expect = 3.330e-35
Identity = 58/83 (69.88%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALD 249
            CSV+LS +NVYACLVCGK+FQGRGR+T AYTH++Q SH+VF+NLR  R++CLPD+YEVVDSSL D+Q ALDP ++ A IAA+D
Sbjct:   59 CSVTLSRHNVYACLVCGKFFQGRGRHTPAYTHALQASHYVFMNLRDARIWCLPDNYEVVDSSLRDVQYALDPSFTDAEIAAID 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: H3G8Y5_PHYRM (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=H3G8Y5_PHYRM)

HSP 1 Score: 132 bits (332), Expect = 8.360e-35
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            CSVSLS+ NVYACLVCGKYF+GRGRNTHA+THSVQ SHHVFINL+T R+YCLPD+YEVVD++L+ +Q AL P +  A +A LDQ
Sbjct:   40 CSVSLSDQNVYACLVCGKYFKGRGRNTHAFTHSVQSSHHVFINLQTDRIYCLPDNYEVVDNTLKPVQDALRPTFEAAQVARLDQ 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: A0A0W8BD71_PHYNI (mRNA-splicing protein ubp10 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BD71_PHYNI)

HSP 1 Score: 132 bits (332), Expect = 1.370e-34
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            CS+SLS+ NVYACLVCGKYFQGRGRNTHA+THSVQ SHHVFINL+T R+YCLPD+YEVVD++L+ +Q AL P +    IA LDQ
Sbjct:   68 CSISLSDQNVYACLVCGKYFQGRGRNTHAFTHSVQSSHHVFINLQTDRIYCLPDNYEVVDNTLKPVQDALRPSFEETQIAQLDQ 151
[Close]
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Match: A0A0N7L7Q4_PLAHL (U4 tri-snrnp-associated n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7Q4_PLAHL)

HSP 1 Score: 132 bits (331), Expect = 1.470e-34
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:    1 CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVYCLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ 252
            CS+SLS+ NVYACLVCGKYFQGRG NTHA+THSVQ SHHVFINL+T R+YCLPD+YEVVD++L+ +Q AL P +  A IA LDQ
Sbjct:   39 CSISLSDQNVYACLVCGKYFQGRGHNTHAFTHSVQSSHHVFINLQTDRIYCLPDNYEVVDNTLKPVQDALRPSFEAAEIAQLDQ 122
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128526.5728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ76_9PHAE2.630e-4691.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9Q1_9STRA5.720e-3878.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2P4XIN4_9STRA2.320e-3671.43U4/U6.U5 tri-snRNP-associated protein n=2 Tax=Phyt... [more]
D0MZT9_PHYIT1.440e-3573.81U4/U6.U5 tri-snRNP-associated protein, putative n=... [more]
A0A833TV06_PHYIN1.960e-3573.81Ubiquitin carboxyl-terminal hydrolase domain-conta... [more]
UPI000C71934E2.020e-3573.81U4/U6.U5 tri-snRNP-associated protein 2-like n=1 T... [more]
A0A813CGI0_9DINO3.330e-3569.88Usp39 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
H3G8Y5_PHYRM8.360e-3572.62Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A0W8BD71_PHYNI1.370e-3472.62mRNA-splicing protein ubp10 n=1 Tax=Phytophthora n... [more]
A0A0N7L7Q4_PLAHL1.470e-3472.62U4 tri-snrnp-associated n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128526contigM-pyrifera_M_contig128526:199..450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue5.4e-37
Seed eggNOG ortholog2880.D8LCL6
Preferred nameUSP39
KEGG koko:K12847
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008380,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0010498,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016579,GO:0016740,GO:0016787,GO:0019538,GO:0019783,GO:0019787,GO:0019941,GO:0022607,GO:0022613,GO:0022618,GO:0030163,GO:0031146,GO:0031974,GO:0031981,GO:0032446,GO:0034622,GO:0034641,GO:0036211,GO:0036459,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0051603,GO:0065003,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG2026@1,KOG2026@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.034676-CDS-M-pyrifera_M_contig128526:198..4501622815798.034676-CDS-M-pyrifera_M_contig128526:198..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128526 199..450 -
1692277574.319014-CDS-M-pyrifera_M_contig128526:198..4501692277574.319014-CDS-M-pyrifera_M_contig128526:198..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128526 199..450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128526.5728.1prot_M-pyrifera_M_contig128526.5728.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128526 199..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128526.5728.1

>prot_M-pyrifera_M_contig128526.5728.1 ID=prot_M-pyrifera_M_contig128526.5728.1|Name=mRNA_M-pyrifera_M_contig128526.5728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
CSVSLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQHSHHVFINLRTCRVY
CLPDSYEVVDSSLEDIQRALDPRYSPAAIAALDQ
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mRNA from alignment at M-pyrifera_M_contig128526:199..450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128526.5728.1 ID=mRNA_M-pyrifera_M_contig128526.5728.1|Name=mRNA_M-pyrifera_M_contig128526.5728.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig128526:199..450- (Macrocystis pyrifera P11B4 male)
TGCAGCGTATCCCTATCAAACAACAACGTCTACGCATGTCTGGTGTGCGG
CAAGTACTTCCAGGGGAGGGGGCGCAACACCCACGCCTACACGCATAGCG
TCCAGCACTCCCACCACGTGTTCATCAACCTCAGGACGTGCCGAGTGTAC
TGCCTGCCCGACTCTTACGAGGTGGTGGACTCGTCTCTCGAGGACATCCA
GAGGGCGCTCGACCCTCGGTACTCGCCGGCAGCTATCGCGGCGCTGGACC
AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128526:199..450-

>mRNA_M-pyrifera_M_contig128526.5728.1 ID=mRNA_M-pyrifera_M_contig128526.5728.1|Name=mRNA_M-pyrifera_M_contig128526.5728.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig128526:199..450- (Macrocystis pyrifera P11B4 male)
TGCAGCGTATCCCTATCAAACAACAACGTCTACGCATGTCTGGTGTGCGG
CAAGTACTTCCAGGGGAGGGGGCGCAACACCCACGCCTACACGCATAGCG
TCCAGCACTCCCACCACGTGTTCATCAACCTCAGGACGTGCCGAGTGTAC
TGCCTGCCCGACTCTTACGAGGTGGTGGACTCGTCTCTCGAGGACATCCA
GAGGGCGCTCGACCCTCGGTACTCGCCGGCAGCTATCGCGGCGCTGGACC
AGTGCAGCGTATCCCTATCAAACAACAACGTCTACGCATGTCTGGTGTGC
GGCAAGTACTTCCAGGGGAGGGGGCGCAACACCCACGCCTACACGCATAG
CGTCCAGCACTCCCACCACGTGTTCATCAACCTCAGGACGTGCCGAGTGT
ACTGCCTGCCCGACTCTTACGAGGTGGTGGACTCGTCTCTCGAGGACATC
CAGAGGGCGCTCGACCCTCGGTACTCGCCGGCAGCTATCGCGGCGCTGGA
CCAG
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