mRNA_M-pyrifera_M_contig100230.56.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100230.56.1
Unique NamemRNA_M-pyrifera_M_contig100230.56.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A7X6ARV9_9ACTN (SCP2 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ARV9_9ACTN)

HSP 1 Score: 126 bits (317), Expect = 3.940e-35
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    4 MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLL 315
            M + D  W  A A+ALADLP +EGA AV+DYVVS +P GK T+GVT+ DG+VT +   +SA+PD+V+S  Y+    IL+GE S+DAG+MNGALKVEGAH +WLL
Sbjct:    1 MRLLDPDWLAAAAAALADLPGMEGADAVVDYVVSGAPQGKVTVGVTVADGRVTGIAEGRSADPDVVVSGSYETFASILSGESSADAGYMNGALKVEGAHAQWLL 104          
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A6B1B3V2_9ACTN (SCP2 sterol-binding domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B3V2_9ACTN)

HSP 1 Score: 125 bits (313), Expect = 1.690e-34
Identity = 63/126 (50.00%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPVRQAAIEALAPVMADTTT 381
            M +F + W  A   ALA LP V G  AVI+Y +S  P G+ ++ VT+VDG  + +   KS E D+ IS+ Y  A+ IL+GE++SDAG+M+GA+KVEG +  WLLDLRPVR AAI+ LAP+M  T++
Sbjct:    1 MQLFGEEWIAAANEALAGLPAVSGLDAVIEYTISGRPIGRTSLTVTLVDGVFSGIALGKSKECDIAISMNYSDAVAILSGELTSDAGYMSGAVKVEGDYPLWLLDLRPVRVAAIDVLAPLMVQTSS 126          
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A6I2YJJ4_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I2YJJ4_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 6.740e-13
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 1
Query:    4 MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPV-----RQAAIEALAPVMAD 372
            M +  D W   V+   A LP  EGAS V+ +VVS SP+GK    V + DG++  +   K A+    I+  Y+ AL  L G    D  FM G LK++G +  ++ DLRPV      QA + A+  V  D
Sbjct:    1 MKLLSDEWLAFVSEQAAALPRSEGASLVMQHVVSGSPSGKVQCWVELRDGELVDLAVGKRADATCTITWTYEDALAALRGA-DLDVAFMRGRLKLDGDYRSFMYDLRPVFASPEGQALLAAVRSVTED 127          
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A6B0WIN4_9ACTN (SCP2 sterol-binding domain-containing protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WIN4_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 8.840e-9
Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    4 MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPVRQAAI--EALAPV 363
            ++   + W  AVA+ L  +     A  V   VVS SPAG A   V + DG+V AV + +  EPD+V+S  Y   ++   GE+S +A +M+G +K+EG         RP+ +++    ALAP+
Sbjct:   34 LEPLSEGWLAAVAAELEAVDEPGSADGVAQIVVSGSPAGAAPFHVVVADGRV-AVVAGRHPEPDMVLSGSYPDFVRAWEGELSVEAAYMSGRMKLEGDQVLLFDGWRPLLRSSQLRAALAPL 154          
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A2E3JCC5_9ACTN (SCP2 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E3JCC5_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 1.180e-7
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1
Query:   79 SAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPVRQA 339
            S VI Y +S +  GK    + I D Q+  + + K+   D  +S     A KI +GE      FM G LKVEG H+R+L+D   VR++
Sbjct:   26 SLVIQYEISGTEQGKLRFSLVIKDSQIKEILTGKNKNADCGVSTTSTEAFKIFSGEKKVIEAFMQGDLKVEGDHQRYLIDFESVRKS 112          
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A0J0UX49_9ACTN (SCP-2 sterol transfer family protein n=3 Tax=root TaxID=1 RepID=A0A0J0UX49_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 6.600e-6
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 1
Query:   19 DTWRGAVASALADLPPVEGASA----VIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPVRQAAIEALAPVMADTT 378
            + W    A+ALA  P +  A+A    +I Y V+ SP GK T  + +  GQ T++    + +  +   + YD A  I  GE+S+ A FM G LK+ G     L+          +ALAP+   TT
Sbjct:    7 EEWLDQAATALAADPAIAAATAESELIILYEVTGSPTGKTTYSIQMDHGQ-TSLRIGPAKDAQVSFGMDYDTAAAIAQGELSAQAAFMQGRLKL-GGDVSVLIRQHACIDGLSDALAPLRDATT 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7X6ARV9_9ACTN3.940e-3558.65SCP2 domain-containing protein n=1 Tax=Actinomycet... [more]
A0A6B1B3V2_9ACTN1.690e-3450.00SCP2 sterol-binding domain-containing protein n=1 ... [more]
A0A6I2YJJ4_9ACTN6.740e-1336.72Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6B0WIN4_9ACTN8.840e-934.43SCP2 sterol-binding domain-containing protein n=6 ... [more]
A0A2E3JCC5_9ACTN1.180e-736.78SCP2 domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A0J0UX49_9ACTN6.600e-632.26SCP-2 sterol transfer family protein n=3 Tax=root ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100230contigM-pyrifera_M_contig100230:100..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.7694654-UTR-M-pyrifera_M_contig100230:99..1021622815497.7694654-UTR-M-pyrifera_M_contig100230:99..102Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100230 100..102 +
1692277438.6713367-UTR-M-pyrifera_M_contig100230:99..1021692277438.6713367-UTR-M-pyrifera_M_contig100230:99..102Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100230 100..102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.7803636-CDS-M-pyrifera_M_contig100230:102..4831622815497.7803636-CDS-M-pyrifera_M_contig100230:102..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100230 103..483 +
1692277438.680873-CDS-M-pyrifera_M_contig100230:102..4831692277438.680873-CDS-M-pyrifera_M_contig100230:102..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100230 103..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100230.56.1prot_M-pyrifera_M_contig100230.56.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100230 103..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100230.56.1

>prot_M-pyrifera_M_contig100230.56.1 ID=prot_M-pyrifera_M_contig100230.56.1|Name=mRNA_M-pyrifera_M_contig100230.56.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDG
QVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHE
RWLLDLRPVRQAAIEALAPVMADTTT*
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mRNA from alignment at M-pyrifera_M_contig100230:100..483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100230.56.1 ID=mRNA_M-pyrifera_M_contig100230.56.1|Name=mRNA_M-pyrifera_M_contig100230.56.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig100230:100..483+ (Macrocystis pyrifera P11B4 male)
CTGATGGACATCTTCGACGACACGTGGCGCGGCGCGGTGGCCTCGGCGCT GGCCGACCTTCCCCCGGTCGAAGGAGCGTCGGCGGTGATCGACTATGTCG TCAGCGCCAGCCCGGCCGGCAAGGCCACCATCGGCGTGACGATCGTCGAT GGCCAGGTCACGGCGGTCGAGAGCGCAAAGTCGGCCGAGCCCGATCTGGT CATCTCGCTCAAATACGACGCGGCGCTCAAGATCCTCACCGGCGAGATGT CGAGCGATGCCGGGTTCATGAACGGCGCGCTGAAGGTGGAGGGAGCCCAC GAACGATGGCTCCTCGACCTGCGCCCGGTGCGTCAGGCCGCCATCGAGGC GCTCGCCCCGGTGATGGCCGACACCACCACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100230:100..483+

>mRNA_M-pyrifera_M_contig100230.56.1 ID=mRNA_M-pyrifera_M_contig100230.56.1|Name=mRNA_M-pyrifera_M_contig100230.56.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig100230:100..483+ (Macrocystis pyrifera P11B4 male)
ATGGACATCTTCGACGACACGTGGCGCGGCGCGGTGGCCTCGGCGCTGGC
CGACCTTCCCCCGGTCGAAGGAGCGTCGGCGGTGATCGACTATGTCGTCA
GCGCCAGCCCGGCCGGCAAGGCCACCATCGGCGTGACGATCGTCGATGGC
CAGGTCACGGCGGTCGAGAGCGCAAAGTCGGCCGAGCCCGATCTGGTCAT
CTCGCTCAAATACGACGCGGCGCTCAAGATCCTCACCGGCGAGATGTCGA
GCGATGCCGGGTTCATGAACGGCGCGCTGAAGGTGGAGGGAGCCCACGAA
CGATGGCTCCTCGACCTGCGCCCGGTGCGTCAGGCCGCCATCGAGGCGCT
CGCCCCGGTGATGGCCGACACCACCACCTGAATGGACATCTTCGACGACA
CGTGGCGCGGCGCGGTGGCCTCGGCGCTGGCCGACCTTCCCCCGGTCGAA
GGAGCGTCGGCGGTGATCGACTATGTCGTCAGCGCCAGCCCGGCCGGCAA
GGCCACCATCGGCGTGACGATCGTCGATGGCCAGGTCACGGCGGTCGAGA
GCGCAAAGTCGGCCGAGCCCGATCTGGTCATCTCGCTCAAATACGACGCG
GCGCTCAAGATCCTCACCGGCGAGATGTCGAGCGATGCCGGGTTCATGAA
CGGCGCGCTGAAGGTGGAGGGAGCCCACGAACGATGGCTCCTCGACCTGC
GCCCGGTGCGTCAGGCCGCCATCGAGGCGCTCGCCCCGGTGATGGCCGAC
ACCACCACCTGA
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