mRNA_M-pyrifera_M_contig100230.56.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A7X6ARV9_9ACTN (SCP2 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ARV9_9ACTN) HSP 1 Score: 126 bits (317), Expect = 3.940e-35 Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1 Query: 4 MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLL 315 M + D W A A+ALADLP +EGA AV+DYVVS +P GK T+GVT+ DG+VT + +SA+PD+V+S Y+ IL+GE S+DAG+MNGALKVEGAH +WLL Sbjct: 1 MRLLDPDWLAAAAAALADLPGMEGADAVVDYVVSGAPQGKVTVGVTVADGRVTGIAEGRSADPDVVVSGSYETFASILSGESSADAGYMNGALKVEGAHAQWLL 104
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A6B1B3V2_9ACTN (SCP2 sterol-binding domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B3V2_9ACTN) HSP 1 Score: 125 bits (313), Expect = 1.690e-34 Identity = 63/126 (50.00%), Postives = 87/126 (69.05%), Query Frame = 1 Query: 4 MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPVRQAAIEALAPVMADTTT 381 M +F + W A ALA LP V G AVI+Y +S P G+ ++ VT+VDG + + KS E D+ IS+ Y A+ IL+GE++SDAG+M+GA+KVEG + WLLDLRPVR AAI+ LAP+M T++ Sbjct: 1 MQLFGEEWIAAANEALAGLPAVSGLDAVIEYTISGRPIGRTSLTVTLVDGVFSGIALGKSKECDIAISMNYSDAVAILSGELTSDAGYMSGAVKVEGDYPLWLLDLRPVRVAAIDVLAPLMVQTSS 126
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A6I2YJJ4_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I2YJJ4_9ACTN) HSP 1 Score: 70.1 bits (170), Expect = 6.740e-13 Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 1 Query: 4 MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPV-----RQAAIEALAPVMAD 372 M + D W V+ A LP EGAS V+ +VVS SP+GK V + DG++ + K A+ I+ Y+ AL L G D FM G LK++G + ++ DLRPV QA + A+ V D Sbjct: 1 MKLLSDEWLAFVSEQAAALPRSEGASLVMQHVVSGSPSGKVQCWVELRDGELVDLAVGKRADATCTITWTYEDALAALRGA-DLDVAFMRGRLKLDGDYRSFMYDLRPVFASPEGQALLAAVRSVTED 127
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A6B0WIN4_9ACTN (SCP2 sterol-binding domain-containing protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WIN4_9ACTN) HSP 1 Score: 60.1 bits (144), Expect = 8.840e-9 Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 4 MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPVRQAAI--EALAPV 363 ++ + W AVA+ L + A V VVS SPAG A V + DG+V AV + + EPD+V+S Y ++ GE+S +A +M+G +K+EG RP+ +++ ALAP+ Sbjct: 34 LEPLSEGWLAAVAAELEAVDEPGSADGVAQIVVSGSPAGAAPFHVVVADGRV-AVVAGRHPEPDMVLSGSYPDFVRAWEGELSVEAAYMSGRMKLEGDQVLLFDGWRPLLRSSQLRAALAPL 154
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A2E3JCC5_9ACTN (SCP2 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E3JCC5_9ACTN) HSP 1 Score: 56.6 bits (135), Expect = 1.180e-7 Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1 Query: 79 SAVIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPVRQA 339 S VI Y +S + GK + I D Q+ + + K+ D +S A KI +GE FM G LKVEG H+R+L+D VR++ Sbjct: 26 SLVIQYEISGTEQGKLRFSLVIKDSQIKEILTGKNKNADCGVSTTSTEAFKIFSGEKKVIEAFMQGDLKVEGDHQRYLIDFESVRKS 112
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Match: A0A0J0UX49_9ACTN (SCP-2 sterol transfer family protein n=3 Tax=root TaxID=1 RepID=A0A0J0UX49_9ACTN) HSP 1 Score: 52.0 bits (123), Expect = 6.600e-6 Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 1 Query: 19 DTWRGAVASALADLPPVEGASA----VIDYVVSASPAGKATIGVTIVDGQVTAVESAKSAEPDLVISLKYDAALKILTGEMSSDAGFMNGALKVEGAHERWLLDLRPVRQAAIEALAPVMADTT 378 + W A+ALA P + A+A +I Y V+ SP GK T + + GQ T++ + + + + YD A I GE+S+ A FM G LK+ G L+ +ALAP+ TT Sbjct: 7 EEWLDQAATALAADPAIAAATAESELIILYEVTGSPTGKTTYSIQMDHGQ-TSLRIGPAKDAQVSFGMDYDTAAAIAQGELSAQAAFMQGRLKL-GGDVSVLIRQHACIDGLSDALAPLRDATT 128 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100230.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig100230.56.1 >prot_M-pyrifera_M_contig100230.56.1 ID=prot_M-pyrifera_M_contig100230.56.1|Name=mRNA_M-pyrifera_M_contig100230.56.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp MDIFDDTWRGAVASALADLPPVEGASAVIDYVVSASPAGKATIGVTIVDGback to top mRNA from alignment at M-pyrifera_M_contig100230:100..483+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig100230.56.1 ID=mRNA_M-pyrifera_M_contig100230.56.1|Name=mRNA_M-pyrifera_M_contig100230.56.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig100230:100..483+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig100230:100..483+ >mRNA_M-pyrifera_M_contig100230.56.1 ID=mRNA_M-pyrifera_M_contig100230.56.1|Name=mRNA_M-pyrifera_M_contig100230.56.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig100230:100..483+ (Macrocystis pyrifera P11B4 male)back to top |