mRNA_M-pyrifera_M_contig102551.550.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102551.550.1
Unique NamemRNA_M-pyrifera_M_contig102551.550.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A556V8U9_BAGYA (Spondin-1 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556V8U9_BAGYA)

HSP 1 Score: 54.7 bits (130), Expect = 3.130e-6
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    4 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 189
            C++++W +WS C ++     CGTGV+SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  524 CMMSEWITWSPCSMS-----CGTGVRSRERYV--KQFPEDGFACTLPTEETEPCTVNKDCSPSS 580
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BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: UPI001955DAFE (spondin-1-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955DAFE)

HSP 1 Score: 52.8 bits (125), Expect = 1.440e-5
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    4 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 189
            C++++W +WS C ++     CG GV+SR R    ++ P  G  CTLP +ET PCT+  DC+ +S
Sbjct:  299 CIMSEWITWSPCSVS-----CGAGVRSRERYV--KQFPDDGFPCTLPTDETEPCTVNEDCSPSS 355
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BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: UPI000C042159 (SCO-spondin-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C042159)

HSP 1 Score: 52.4 bits (124), Expect = 2.000e-5
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 3 
Query:  252 KDCAVSEWTTWSNCSVDCGSGGSQYRTRKVV 344
            KDC VS W+ WSNC+  CG GG+Q+RTR+V+
Sbjct:  927 KDCVVSSWSKWSNCTQLCGEGGTQWRTRRVI 957
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BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: W5UED8_ICTPU (Spondin-1 n=2 Tax=Siluroidei TaxID=1489793 RepID=W5UED8_ICTPU)

HSP 1 Score: 52.4 bits (124), Expect = 2.020e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    4 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 189
            C++++W +WS C ++     CG GV+SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  499 CMMSEWITWSPCSVS-----CGAGVRSRERYV--KQFPEDGFACTLPTEETEPCTVNHDCSPSS 555
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BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A8J1YV96_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YV96_9DINO)

HSP 1 Score: 51.6 bits (122), Expect = 3.730e-5
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  249 PKDCAVSEWTTWSNCSVDCGSGGSQYRTRKVVTQ 350
            P+DC +SEW++WS+CS DCG GG + RTR VVT+
Sbjct:  247 PQDCVLSEWSSWSSCSKDCG-GGQKNRTRVVVTE 279
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BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: UPI000F54E2A3 (thrombospondin-2-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F54E2A3)

HSP 1 Score: 50.8 bits (120), Expect = 4.880e-5
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:  252 KDCAVSEWTTWSNCSVDCGSGGSQYRTRKVV 344
            +DC VS W+ WSNC+  CG GG+Q+RTR+V 
Sbjct:   51 RDCIVSSWSKWSNCTQPCGEGGTQWRTRRVT 81
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BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A7R9WHB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHB0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.710e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  237 TALAPKDCAVSEWTTWSNCSVDCGSGGSQYRTRKVVTQ 350
            T   P DCA+S+W+ WS+CS DCG GG+Q+R+R +  Q
Sbjct:  526 THCCPVDCALSDWSAWSDCSKDCG-GGTQFRSRSISVQ 562
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BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A3B4DBA3_PYGNA (Spondin-1 n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4DBA3_PYGNA)

HSP 1 Score: 50.8 bits (120), Expect = 6.960e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    4 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 189
            C++++W +WS C ++     CG G++SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  476 CMMSEWITWSPCSVS-----CGLGMRSRERYV--KQFPEDGFACTLPTEETEPCTVNEDCSPSS 532
[Close]
BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: W5K6J9_ASTMX (Spondin-1 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K6J9_ASTMX)

HSP 1 Score: 50.8 bits (120), Expect = 6.960e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    4 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 189
            C++++W +WS C ++     CG G++SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  490 CMMSEWITWSPCSVS-----CGLGMRSRERYV--KQFPEDGFACTLPTEETEPCTVNEDCSPSS 546
[Close]
BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A8B9JQZ4_ASTMX (Spondin-1 n=5 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JQZ4_ASTMX)

HSP 1 Score: 50.8 bits (120), Expect = 6.970e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    4 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 189
            C++++W +WS C ++     CG G++SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  487 CMMSEWITWSPCSVS-----CGLGMRSRERYV--KQFPEDGFACTLPTEETEPCTVNEDCSPSS 543
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A556V8U9_BAGYA3.130e-642.19Spondin-1 n=1 Tax=Bagarius yarrelli TaxID=175774 R... [more]
UPI001955DAFE1.440e-540.63spondin-1-like n=1 Tax=Pimephales promelas TaxID=9... [more]
UPI000C0421592.000e-561.29SCO-spondin-like n=1 Tax=Stylophora pistillata Tax... [more]
W5UED8_ICTPU2.020e-540.63Spondin-1 n=2 Tax=Siluroidei TaxID=1489793 RepID=W... [more]
A0A8J1YV96_9DINO3.730e-561.76Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
UPI000F54E2A34.880e-558.06thrombospondin-2-like n=1 Tax=Pocillopora damicorn... [more]
A0A7R9WHB0_9STRA6.710e-552.63Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A3B4DBA3_PYGNA6.960e-539.06Spondin-1 n=1 Tax=Pygocentrus nattereri TaxID=4251... [more]
W5K6J9_ASTMX6.960e-539.06Spondin-1 n=1 Tax=Astyanax mexicanus TaxID=7994 Re... [more]
A0A8B9JQZ4_ASTMX6.970e-539.06Spondin-1 n=5 Tax=Astyanax mexicanus TaxID=7994 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102551contigM-pyrifera_M_contig102551:2..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.9581792-CDS-M-pyrifera_M_contig102551:3..3541622815528.9581792-CDS-M-pyrifera_M_contig102551:3..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102551 4..354 -
1692277450.6023488-CDS-M-pyrifera_M_contig102551:3..3541692277450.6023488-CDS-M-pyrifera_M_contig102551:3..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102551 4..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102551.550.1prot_M-pyrifera_M_contig102551.550.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102551 4..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102551.550.1

>prot_M-pyrifera_M_contig102551.550.1 ID=prot_M-pyrifera_M_contig102551.550.1|Name=mRNA_M-pyrifera_M_contig102551.550.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
NCLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLN
ETMPCTIDCTSASTARTRISRTHTSPRSPQPWPRKTAPCRSGLPGATAAS
TAAPAAASTAPARSSRS
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mRNA from alignment at M-pyrifera_M_contig102551:2..354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102551.550.1 ID=mRNA_M-pyrifera_M_contig102551.550.1|Name=mRNA_M-pyrifera_M_contig102551.550.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=353bp|location=Sequence derived from alignment at M-pyrifera_M_contig102551:2..354- (Macrocystis pyrifera P11B4 male)
AACTGCCTCGTCACCAAGTGGTCTTCCTGGTCCAAGTGCAAGCTGGCCAA
CCCCGTTTCCGGCTGCGGAACTGGCGTGCAGAGCAGGACACGCACAAAGA
CGCGTGAAGAGGACCCTAGCCGCGGTGGAAAGTGCACCCTGCCTCTGAAC
GAGACCATGCCGTGCACCATCGACTGCACCAGTGCGTCCACCGCTCGCAC
ACGCATCTCTCGCACACACACCTCACCCCGCTCCCCACAGCCTTGGCCCC
GAAAGACTGCGCCGTGTCGGAGTGGACTACCTGGAGCAACTGCAGCGTCG
ACTGCGGCTCCGGCGGCAGCCAGTACCGCACCCGCAAGGTCGTCACGCAG
TCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102551:2..354-

>mRNA_M-pyrifera_M_contig102551.550.1 ID=mRNA_M-pyrifera_M_contig102551.550.1|Name=mRNA_M-pyrifera_M_contig102551.550.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig102551:2..354- (Macrocystis pyrifera P11B4 male)
AACTGCCTCGTCACCAAGTGGTCTTCCTGGTCCAAGTGCAAGCTGGCCAA
CCCCGTTTCCGGCTGCGGAACTGGCGTGCAGAGCAGGACACGCACAAAGA
CGCGTGAAGAGGACCCTAGCCGCGGTGGAAAGTGCACCCTGCCTCTGAAC
GAGACCATGCCGTGCACCATCGACTGCACCAGTGCGTCCACCGCTCGCAC
ACGCATCTCTCGCACACACACCTCACCCCGCTCCCCACAGCCTTGGCCCC
GAAAGACTGCGCCGTGTCGGAGTGGACTACCTGGAGCAACTGCAGCGTCG
ACTGCGGCTCCGGCGGCAGCCAGTACCGCACCCGCAAGGTCGTCACGCAG
TAACTGCCTCGTCACCAAGTGGTCTTCCTGGTCCAAGTGCAAGCTGGCCA
ACCCCGTTTCCGGCTGCGGAACTGGCGTGCAGAGCAGGACACGCACAAAG
ACGCGTGAAGAGGACCCTAGCCGCGGTGGAAAGTGCACCCTGCCTCTGAA
CGAGACCATGCCGTGCACCATCGACTGCACCAGTGCGTCCACCGCTCGCA
CACGCATCTCTCGCACACACACCTCACCCCGCTCCCCACAGCCTTGGCCC
CGAAAGACTGCGCCGTGTCGGAGTGGACTACCTGGAGCAACTGCAGCGTC
GACTGCGGCTCCGGCGGCAGCCAGTACCGCACCCGCAAGGTCGTCACGCA
GT
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