prot_M-pyrifera_M_contig102551.550.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig102551.550.1
Unique Name	prot_M-pyrifera_M_contig102551.550.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	117

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A556V8U9_BAGYA (Spondin-1 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556V8U9_BAGYA)

HSP 1 Score: 54.7 bits (130), Expect = 3.130e-6
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 0

Query:    2 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 63
            C++++W +WS C ++     CGTGV+SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  524 CMMSEWITWSPCSMS-----CGTGVRSRERYV--KQFPEDGFACTLPTEETEPCTVNKDCSPSS 580

[Close]

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: UPI001955DAFE (spondin-1-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955DAFE)

HSP 1 Score: 52.8 bits (125), Expect = 1.440e-5
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 0

Query:    2 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 63
            C++++W +WS C ++     CG GV+SR R    ++ P  G  CTLP +ET PCT+  DC+ +S
Sbjct:  299 CIMSEWITWSPCSVS-----CGAGVRSRERYV--KQFPDDGFPCTLPTDETEPCTVNEDCSPSS 355

[Close]

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: W5UED8_ICTPU (Spondin-1 n=2 Tax=Siluroidei TaxID=1489793 RepID=W5UED8_ICTPU)

HSP 1 Score: 52.4 bits (124), Expect = 2.020e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0

Query:    2 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 63
            C++++W +WS C ++     CG GV+SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  499 CMMSEWITWSPCSVS-----CGAGVRSRERYV--KQFPEDGFACTLPTEETEPCTVNHDCSPSS 555

[Close]

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A3B4DBA3_PYGNA (Spondin-1 n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4DBA3_PYGNA)

HSP 1 Score: 50.8 bits (120), Expect = 6.960e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0

Query:    2 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 63
            C++++W +WS C ++     CG G++SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  476 CMMSEWITWSPCSVS-----CGLGMRSRERYV--KQFPEDGFACTLPTEETEPCTVNEDCSPSS 532

[Close]

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: W5K6J9_ASTMX (Spondin-1 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K6J9_ASTMX)

HSP 1 Score: 50.8 bits (120), Expect = 6.960e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0

Query:    2 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 63
            C++++W +WS C ++     CG G++SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  490 CMMSEWITWSPCSVS-----CGLGMRSRERYV--KQFPEDGFACTLPTEETEPCTVNEDCSPSS 546

[Close]

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A8B9JQZ4_ASTMX (Spondin-1 n=5 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JQZ4_ASTMX)

HSP 1 Score: 50.8 bits (120), Expect = 6.970e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0

Query:    2 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 63
            C++++W +WS C ++     CG G++SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  487 CMMSEWITWSPCSVS-----CGLGMRSRERYV--KQFPEDGFACTLPTEETEPCTVNEDCSPSS 543

[Close]

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A8B9R8M1_ASTMX (Spondin-1 n=6 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9R8M1_ASTMX)

HSP 1 Score: 50.8 bits (120), Expect = 6.980e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0

Query:    2 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 63
            C++++W +WS C ++     CG G++SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  497 CMMSEWITWSPCSVS-----CGLGMRSRERYV--KQFPEDGFACTLPTEETEPCTVNEDCSPSS 553

[Close]

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Match: A0A3B4DDY1_PYGNA (Spondin-1 n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4DDY1_PYGNA)

HSP 1 Score: 50.8 bits (120), Expect = 6.990e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0

Query:    2 CLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLNETMPCTI--DCTSAS 63
            C++++W +WS C ++     CG G++SR R    ++ P  G  CTLP  ET PCT+  DC+ +S
Sbjct:  517 CMMSEWITWSPCSVS-----CGLGMRSRERYV--KQFPEDGFACTLPTEETEPCTVNEDCSPSS 573

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig102551.550.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8


Match Name	E-value	Identity	Description
A0A556V8U9_BAGYA	3.130e-6	42.19	Spondin-1 n=1 Tax=Bagarius yarrelli TaxID=175774 R...	[more]
UPI001955DAFE	1.440e-5	40.63	spondin-1-like n=1 Tax=Pimephales promelas TaxID=9...	[more]
W5UED8_ICTPU	2.020e-5	40.63	Spondin-1 n=2 Tax=Siluroidei TaxID=1489793 RepID=W...	[more]
A0A3B4DBA3_PYGNA	6.960e-5	39.06	Spondin-1 n=1 Tax=Pygocentrus nattereri TaxID=4251...	[more]
W5K6J9_ASTMX	6.960e-5	39.06	Spondin-1 n=1 Tax=Astyanax mexicanus TaxID=7994 Re...	[more]
A0A8B9JQZ4_ASTMX	6.970e-5	39.06	Spondin-1 n=5 Tax=Astyanax mexicanus TaxID=7994 Re...	[more]
A0A8B9R8M1_ASTMX	6.980e-5	39.06	Spondin-1 n=6 Tax=Astyanax mexicanus TaxID=7994 Re...	[more]
A0A3B4DDY1_PYGNA	6.990e-5	39.06	Spondin-1 n=2 Tax=Serrasalmidae TaxID=42495 RepID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036383	Thrombospondin type-1 (TSP1) repeat superfamily	GENE3D	2.20.100.10		coord: 1..56 e-value: 2.2E-9 score: 39.5
IPR036383	Thrombospondin type-1 (TSP1) repeat superfamily	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 1..56
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 1..60 score: 9.526

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig102551	contig	M-pyrifera_M_contig102551:4..354 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig102551.550.1	mRNA_M-pyrifera_M_contig102551.550.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig102551 2..354 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig102551.550.1 ID=prot_M-pyrifera_M_contig102551.550.1|Name=mRNA_M-pyrifera_M_contig102551.550.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
NCLVTKWSSWSKCKLANPVSGCGTGVQSRTRTKTREEDPSRGGKCTLPLN
ETMPCTIDCTSASTARTRISRTHTSPRSPQPWPRKTAPCRSGLPGATAAS
TAAPAAASTAPARSSRS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036383	TSP1_rpt_sf
IPR000884	TSP1_rpt