mRNA_M-pyrifera_M_contig126456.5329.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A3M1KP64_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1KP64_9DELT) HSP 1 Score: 56.6 bits (135), Expect = 5.110e-7 Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 73 MSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPK 234
+ GD FG + +GDVDGDG PDLAVG+PG DDGG +D G + ++L S K
Sbjct: 169 LDGDQFGAALARLGDVDGDGVPDLAVGAPGDDDGG-DDRGAVWILLLESDGTVK 221
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A5R9E1G2_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces marianii TaxID=1817406 RepID=A0A5R9E1G2_9ACTN) HSP 1 Score: 55.1 bits (131), Expect = 1.740e-6 Identity = 26/66 (39.39%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 25 RVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSS 222
R + QG+ ++ ++ +P +GD FG+ + +GD++GDG DLA+G+PG+D GVE +G + V+ T++
Sbjct: 352 RTITQGTDNIPSSASP-NGDRFGYSLS-LGDINGDGKADLAIGTPGKDINGVEGTGAVTVLYGTAA 415
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: UPI00164F080B (FG-GAP-like repeat-containing protein n=1 Tax=Actinomadura alba TaxID=406431 RepID=UPI00164F080B) HSP 1 Score: 54.7 bits (130), Expect = 2.360e-6 Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 4 GMGFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPKPGWWQIGATSARWQVPGSIQNWIGVSHKLEL 327
G GF R ++ Q +S + GD FG + +GD++GDG D+A+G+PG D G V D+G V+ T+S G QIG +A VPG+ + ++L +
Sbjct: 308 GTGFRRQLLVTQDTSGVPGTGE--QGDGFGAGLA-VGDLNGDGKGDVAIGAPGEDIGTVADAGAFTVLYGTASGVTTAGAQQIGQNTA--DVPGNAETRDAFGYELSV 410
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A7Z0PUN7_9ACTN (VCBS repeat-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A7Z0PUN7_9ACTN) HSP 1 Score: 54.3 bits (129), Expect = 3.230e-6 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 10 GFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPKPGWWQIGATSARWQVPGSIQ--NWIGVSHKLE 324
G RV+ + QG+ + GD FG ++ +GD+DGDG+ DLAVG+PG D G ++DSG + V+ + G +A VPG+ + +W G KL+
Sbjct: 326 GTGRVQAVGQGTPGVPGT--AEDGDRFGSSVD-LGDIDGDGYLDLAVGAPGEDVGTLKDSGSVVVLRGGPAGLTTTGARTFHQDTAG--VPGTAEAYDWFGTDVKLD 427
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A1A9BY72_9ACTN (FG-GAP repeat-containing protein n=1 Tax=Streptomyces sp. DI166 TaxID=1839783 RepID=A0A1A9BY72_9ACTN) HSP 1 Score: 53.5 bits (127), Expect = 5.930e-6 Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 1
Query: 10 GFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPKPGWWQIGATSARW---QVPGSIQNWIGVSHKLEL 327
G S + Q SS + A +P + D FG+ + GDVDGDG+ DLAVG P D GG ED GG+ + R PG + T + W V G Q + H + L
Sbjct: 301 GPSGSMMYNQASSGV--AGSPEADDNFGYALA-AGDVDGDGYADLAVGVPHEDVGGNEDQGGVTLF------RGGPG--GLTGTRSSWIPQTVTGPAQEYAAFGHTVRL 398
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A3M0ZGQ1_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M0ZGQ1_9BACT) HSP 1 Score: 52.8 bits (125), Expect = 1.150e-5 Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 76 SGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPK 234
+GD FG + G+GD+DGDG DLAVG+PG DDGG D GG+ ++ + K
Sbjct: 124 NGDRFGAAVAGVGDLDGDGIGDLAVGAPGDDDGGT-DRGGLWILWLNADGTVK 175
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A124I6S8_9ACTN (Uncharacterized protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A124I6S8_9ACTN) HSP 1 Score: 52.4 bits (124), Expect = 1.530e-5 Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 28 VLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSS 222
LEQ SS + +GD FG+ + +GD++GDG+ DLA+GSPG D G+ D+G ++V+ ++S
Sbjct: 327 TLEQNSSGIPGTSE--TGDAFGWELS-LGDINGDGYDDLAIGSPGEDLNGIADAGMVSVLYGSTS 388
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A7C5AE15_9BACT (Peptidase_S8 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5AE15_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 2.240e-5 Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 28 VLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAV 204
L+ S+ L DAP+S D +G + G+GDVDGDG D AVG P D GG+ D+G + V
Sbjct: 554 TLQDPSTVLFRQDAPLSEDLYGTALAGLGDVDGDGIEDFAVGVPSDDQGGL-DAGAVVV 611
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A3B0Z0Y4_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0Z0Y4_9ZZZZ) HSP 1 Score: 51.2 bits (121), Expect = 3.860e-5 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 82 DTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILF 213
D FG + GIGD+DGDG PDL VG+PG DDGG+ D G + V+
Sbjct: 413 DQFGAAVAGIGDLDGDGVPDLVVGAPGDDDGGL-DRGAVWVLFL 455
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: UPI001C2E0C18 (integrin alpha n=1 Tax=Streptomyces sp. BV286 TaxID=2849672 RepID=UPI001C2E0C18) HSP 1 Score: 51.2 bits (121), Expect = 3.890e-5 Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 1
Query: 4 GMGFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPKPGWW----QIGATSARWQ 276
G+ +R VL Q S+ + P + D FG + D+DGDG+ DLAVGSPG D G V D+GG+ V+ ++ W +G +SAR Q
Sbjct: 78 GIDTARRVVLTQSSAGVPGT--PEAHDAFGSAVTSA-DLDGDGYADLAVGSPGEDIGDVVDAGGVTVLWGSARGLTGTSSWLESGTLGPSSAREQ 169 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126456.5329.1 >prot_M-pyrifera_M_contig126456.5329.1 ID=prot_M-pyrifera_M_contig126456.5329.1|Name=mRNA_M-pyrifera_M_contig126456.5329.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp MGFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSback to top mRNA from alignment at M-pyrifera_M_contig126456:17..346- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126456.5329.1 ID=mRNA_M-pyrifera_M_contig126456.5329.1|Name=mRNA_M-pyrifera_M_contig126456.5329.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig126456:17..346- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126456:17..346- >mRNA_M-pyrifera_M_contig126456.5329.1 ID=mRNA_M-pyrifera_M_contig126456.5329.1|Name=mRNA_M-pyrifera_M_contig126456.5329.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig126456:17..346- (Macrocystis pyrifera P11B4 male)back to top |