mRNA_M-pyrifera_M_contig126456.5329.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126456.5329.1
Unique NamemRNA_M-pyrifera_M_contig126456.5329.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A3M1KP64_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1KP64_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 5.110e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   73 MSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPK 234
            + GD FG  +  +GDVDGDG PDLAVG+PG DDGG +D G + ++L  S    K
Sbjct:  169 LDGDQFGAALARLGDVDGDGVPDLAVGAPGDDDGG-DDRGAVWILLLESDGTVK 221          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A5R9E1G2_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces marianii TaxID=1817406 RepID=A0A5R9E1G2_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-6
Identity = 26/66 (39.39%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   25 RVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSS 222
            R + QG+ ++ ++ +P +GD FG+ +  +GD++GDG  DLA+G+PG+D  GVE +G + V+  T++
Sbjct:  352 RTITQGTDNIPSSASP-NGDRFGYSLS-LGDINGDGKADLAIGTPGKDINGVEGTGAVTVLYGTAA 415          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: UPI00164F080B (FG-GAP-like repeat-containing protein n=1 Tax=Actinomadura alba TaxID=406431 RepID=UPI00164F080B)

HSP 1 Score: 54.7 bits (130), Expect = 2.360e-6
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 1
Query:    4 GMGFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPKPGWWQIGATSARWQVPGSIQNWIGVSHKLEL 327
            G GF R  ++ Q +S +        GD FG  +  +GD++GDG  D+A+G+PG D G V D+G   V+  T+S     G  QIG  +A   VPG+ +      ++L +
Sbjct:  308 GTGFRRQLLVTQDTSGVPGTGE--QGDGFGAGLA-VGDLNGDGKGDVAIGAPGEDIGTVADAGAFTVLYGTASGVTTAGAQQIGQNTA--DVPGNAETRDAFGYELSV 410          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A7Z0PUN7_9ACTN (VCBS repeat-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A7Z0PUN7_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 3.230e-6
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:   10 GFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPKPGWWQIGATSARWQVPGSIQ--NWIGVSHKLE 324
            G  RV+ + QG+  +        GD FG  ++ +GD+DGDG+ DLAVG+PG D G ++DSG + V+    +     G       +A   VPG+ +  +W G   KL+
Sbjct:  326 GTGRVQAVGQGTPGVPGT--AEDGDRFGSSVD-LGDIDGDGYLDLAVGAPGEDVGTLKDSGSVVVLRGGPAGLTTTGARTFHQDTAG--VPGTAEAYDWFGTDVKLD 427          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A1A9BY72_9ACTN (FG-GAP repeat-containing protein n=1 Tax=Streptomyces sp. DI166 TaxID=1839783 RepID=A0A1A9BY72_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 5.930e-6
Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 1
Query:   10 GFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPKPGWWQIGATSARW---QVPGSIQNWIGVSHKLEL 327
            G S   +  Q SS +  A +P + D FG+ +   GDVDGDG+ DLAVG P  D GG ED GG+ +       R  PG   +  T + W    V G  Q +    H + L
Sbjct:  301 GPSGSMMYNQASSGV--AGSPEADDNFGYALA-AGDVDGDGYADLAVGVPHEDVGGNEDQGGVTLF------RGGPG--GLTGTRSSWIPQTVTGPAQEYAAFGHTVRL 398          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A3M0ZGQ1_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M0ZGQ1_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.150e-5
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   76 SGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPK 234
            +GD FG  + G+GD+DGDG  DLAVG+PG DDGG  D GG+ ++   +    K
Sbjct:  124 NGDRFGAAVAGVGDLDGDGIGDLAVGAPGDDDGGT-DRGGLWILWLNADGTVK 175          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A124I6S8_9ACTN (Uncharacterized protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A124I6S8_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.530e-5
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   28 VLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSS 222
             LEQ SS +       +GD FG+ +  +GD++GDG+ DLA+GSPG D  G+ D+G ++V+  ++S
Sbjct:  327 TLEQNSSGIPGTSE--TGDAFGWELS-LGDINGDGYDDLAIGSPGEDLNGIADAGMVSVLYGSTS 388          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A7C5AE15_9BACT (Peptidase_S8 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5AE15_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 2.240e-5
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   28 VLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAV 204
             L+  S+ L   DAP+S D +G  + G+GDVDGDG  D AVG P  D GG+ D+G + V
Sbjct:  554 TLQDPSTVLFRQDAPLSEDLYGTALAGLGDVDGDGIEDFAVGVPSDDQGGL-DAGAVVV 611          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: A0A3B0Z0Y4_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0Z0Y4_9ZZZZ)

HSP 1 Score: 51.2 bits (121), Expect = 3.860e-5
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   82 DTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILF 213
            D FG  + GIGD+DGDG PDL VG+PG DDGG+ D G + V+  
Sbjct:  413 DQFGAAVAGIGDLDGDGVPDLVVGAPGDDDGGL-DRGAVWVLFL 455          
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Match: UPI001C2E0C18 (integrin alpha n=1 Tax=Streptomyces sp. BV286 TaxID=2849672 RepID=UPI001C2E0C18)

HSP 1 Score: 51.2 bits (121), Expect = 3.890e-5
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    4 GMGFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGSPGRDDGGVEDSGGIAVILFTSSARPKPGWW----QIGATSARWQ 276
            G+  +R  VL Q S+ +     P + D FG  +    D+DGDG+ DLAVGSPG D G V D+GG+ V+  ++        W     +G +SAR Q
Sbjct:   78 GIDTARRVVLTQSSAGVPGT--PEAHDAFGSAVTSA-DLDGDGYADLAVGSPGEDIGDVVDAGGVTVLWGSARGLTGTSSWLESGTLGPSSAREQ 169          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126456.5329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A3M1KP64_9DELT5.110e-751.85Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A5R9E1G2_9ACTN1.740e-639.39Uncharacterized protein n=1 Tax=Streptomyces maria... [more]
UPI00164F080B2.360e-634.26FG-GAP-like repeat-containing protein n=1 Tax=Acti... [more]
A0A7Z0PUN7_9ACTN3.230e-634.58VCBS repeat-containing protein n=2 Tax=Streptomyce... [more]
A0A1A9BY72_9ACTN5.930e-636.70FG-GAP repeat-containing protein n=1 Tax=Streptomy... [more]
A0A3M0ZGQ1_9BACT1.150e-549.06Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A124I6S8_9ACTN1.530e-541.54Uncharacterized protein n=4 Tax=Streptomyces TaxID... [more]
A0A7C5AE15_9BACT2.240e-547.46Peptidase_S8 domain-containing protein n=1 Tax=Pla... [more]
A0A3B0Z0Y4_9ZZZZ3.860e-556.82Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
UPI001C2E0C183.890e-537.89integrin alpha n=1 Tax=Streptomyces sp. BV286 TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126456contigM-pyrifera_M_contig126456:17..346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.8389084-CDS-M-pyrifera_M_contig126456:16..3401622815778.8389084-CDS-M-pyrifera_M_contig126456:16..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126456 17..340 -
1692277565.2758083-CDS-M-pyrifera_M_contig126456:16..3401692277565.2758083-CDS-M-pyrifera_M_contig126456:16..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126456 17..340 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.8576229-UTR-M-pyrifera_M_contig126456:340..3461622815778.8576229-UTR-M-pyrifera_M_contig126456:340..346Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126456 341..346 -
1692277565.284205-UTR-M-pyrifera_M_contig126456:340..3461692277565.284205-UTR-M-pyrifera_M_contig126456:340..346Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126456 341..346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126456.5329.1prot_M-pyrifera_M_contig126456.5329.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126456 17..340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126456.5329.1

>prot_M-pyrifera_M_contig126456.5329.1 ID=prot_M-pyrifera_M_contig126456.5329.1|Name=mRNA_M-pyrifera_M_contig126456.5329.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MGFSRVRVLEQGSSDLDAADAPMSGDTFGFVMEGIGDVDGDGWPDLAVGS
PGRDDGGVEDSGGIAVILFTSSARPKPGWWQIGATSARWQVPGSIQNWIG
VSHKLELG
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mRNA from alignment at M-pyrifera_M_contig126456:17..346-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126456.5329.1 ID=mRNA_M-pyrifera_M_contig126456.5329.1|Name=mRNA_M-pyrifera_M_contig126456.5329.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig126456:17..346- (Macrocystis pyrifera P11B4 male)
GAAGGCATGGGATTTTCAAGAGTTCGGGTCTTGGAACAAGGAAGTTCTGA TCTTGATGCAGCTGATGCACCAATGTCTGGTGACACGTTTGGTTTTGTGA TGGAAGGGATTGGGGATGTGGATGGAGATGGTTGGCCAGATTTGGCAGTG GGAAGTCCTGGTCGCGATGACGGAGGTGTAGAGGACAGTGGGGGGATTGC TGTGATTCTCTTTACGTCAAGTGCGCGTCCCAAGCCAGGGTGGTGGCAAA TTGGAGCCACTTCTGCTCGTTGGCAAGTTCCTGGATCCATTCAAAACTGG ATTGGAGTGTCGCACAAGCTCGAGCTGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126456:17..346-

>mRNA_M-pyrifera_M_contig126456.5329.1 ID=mRNA_M-pyrifera_M_contig126456.5329.1|Name=mRNA_M-pyrifera_M_contig126456.5329.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig126456:17..346- (Macrocystis pyrifera P11B4 male)
ATGGGATTTTCAAGAGTTCGGGTCTTGGAACAAGGAAGTTCTGATCTTGA
TGCAGCTGATGCACCAATGTCTGGTGACACGTTTGGTTTTGTGATGGAAG
GGATTGGGGATGTGGATGGAGATGGTTGGCCAGATTTGGCAGTGGGAAGT
CCTGGTCGCGATGACGGAGGTGTAGAGGACAGTGGGGGGATTGCTGTGAT
TCTCTTTACGTCAAGTGCGCGTCCCAAGCCAGGGTGGTGGCAAATTGGAG
CCACTTCTGCTCGTTGGCAAGTTCCTGGATCCATTCAAAACTGGATTGGA
GTGTCGCACAAGCTCGAGCTGGGAATGGGATTTTCAAGAGTTCGGGTCTT
GGAACAAGGAAGTTCTGATCTTGATGCAGCTGATGCACCAATGTCTGGTG
ACACGTTTGGTTTTGTGATGGAAGGGATTGGGGATGTGGATGGAGATGGT
TGGCCAGATTTGGCAGTGGGAAGTCCTGGTCGCGATGACGGAGGTGTAGA
GGACAGTGGGGGGATTGCTGTGATTCTCTTTACGTCAAGTGCGCGTCCCA
AGCCAGGGTGGTGGCAAATTGGAGCCACTTCTGCTCGTTGGCAAGTTCCT
GGATCCATTCAAAACTGGATTGGAGTGTCGCACAAGCTCGAGCTGGGA
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