mRNA_M-pyrifera_M_contig125590.5179.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125590.5179.1
Unique NamemRNA_M-pyrifera_M_contig125590.5179.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: A0A031JIY0_9SPHN (Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Novosphingobium resinovorum TaxID=158500 RepID=A0A031JIY0_9SPHN)

HSP 1 Score: 243 bits (620), Expect = 1.930e-80
Identity = 110/144 (76.39%), Postives = 126/144 (87.50%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWEHSDKAGW 432
            I LWRDVMGFE+ VETVIPDG  PGP+T+MYP LLDDIFK+KGARS+MALLSS +GA IELQEC NPAI +TP ENLRYGHTG HELGL+V DID +FEKVRAAGY TQT+YVWQCA++GRSFLFYD+DGNMIQ+WE+  +  W
Sbjct:   17 IRLWRDVMGFELGVETVIPDGAEPGPNTFMYPALLDDIFKIKGARSRMALLSSKDGAFIELQECLNPAITKTPEENLRYGHTGIHELGLLVTDIDGWFEKVRAAGYRTQTDYVWQCASMGRSFLFYDQDGNMIQLWENLGEPEW 160          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: UPI001BAF8B50 (VOC family protein n=1 Tax=Sphingobium phenoxybenzoativorans TaxID=1592790 RepID=UPI001BAF8B50)

HSP 1 Score: 239 bits (610), Expect = 6.450e-79
Identity = 105/144 (72.92%), Postives = 127/144 (88.19%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWEHSDKAGW 432
            I LWRDV+GFE+ V+TVIPDGP PGPDT+MYPELLDDIFKVKGA+S+MALLSSAEGA IELQEC+NP  ++TP ENLRY HTG HELGL+V  IDA+++K++AAGY  QT+YVWQCA++GRSFLFYD+DGNMIQ+WE+  +  W
Sbjct:   17 IKLWRDVLGFELGVQTVIPDGPEPGPDTFMYPELLDDIFKVKGAKSRMALLSSAEGAFIELQECQNPPAQKTPEENLRYAHTGIHELGLLVTGIDAWYDKIKAAGYRMQTDYVWQCASMGRSFLFYDQDGNMIQIWENLGEPEW 160          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: UPI0012E88E9B (VOC family protein n=1 Tax=Sphingomonas profundi TaxID=2681549 RepID=UPI0012E88E9B)

HSP 1 Score: 238 bits (606), Expect = 2.810e-78
Identity = 106/146 (72.60%), Postives = 125/146 (85.62%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWEH--SDKAGW 432
            I LWRD MGFE+ V+TVIPDGP  GP+T+MYP LLDDIFKVKGARSKMALLSS EGA IELQECENP I++TP ENLRYGHTG HELGL+V+D+D ++ +++AAGY  QT+YVW CAN+GRSFLFYD+DGNMIQMWE+   + A W
Sbjct:   17 IKLWRDTMGFELGVQTVIPDGPEAGPETFMYPALLDDIFKVKGARSKMALLSSKEGAFIELQECENPVIKKTPEENLRYGHTGIHELGLIVEDLDGWYARIKAAGYRMQTDYVWSCANLGRSFLFYDQDGNMIQMWENPPGEAATW 162          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: UPI00167346DE (VOC family protein n=2 Tax=Novosphingobium colocasiae TaxID=1256513 RepID=UPI00167346DE)

HSP 1 Score: 234 bits (598), Expect = 4.340e-77
Identity = 104/144 (72.22%), Postives = 125/144 (86.81%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWEHSDKAGW 432
            I LWRDVMGFE+ V+TVIPDG  PGP+T+M+P+LLDDIFKVKGA+S+MALLSS +GA IELQEC NP IE+TP ENLRYGHTG HELGL+V+ ID +FEK++AAGY  QT+YVWQCA IGRSF+FYD+DGNMIQ+WE+  +  W
Sbjct:   17 IRLWRDVMGFELGVQTVIPDGQEPGPNTFMHPKLLDDIFKVKGAQSRMALLSSKDGAFIELQECINPKIEKTPEENLRYGHTGIHELGLLVEGIDGWFEKIKAAGYRMQTDYVWQCAEIGRSFIFYDQDGNMIQIWENMGQPEW 160          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: A0A1C6NMS7_9BURK (Catechol 2,3-dioxygenase n=1 Tax=Variovorax sp. HW608 TaxID=1034889 RepID=A0A1C6NMS7_9BURK)

HSP 1 Score: 190 bits (482), Expect = 2.260e-59
Identity = 88/143 (61.54%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPE-LLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWEHSDKA 426
            I LWRD+MGF +  + +IPDG   GP T M P  LL+D++KV GA +++A+L S EGA+IEL + + P +++TPP+ L YGH+G  ELGLV+DDID FFEKVRAAGY TQT+YVW CAN+GRSF+FYDKDGNMIQ+WEH+  A
Sbjct:   17 IRLWRDLMGFTLKADLIIPDGEEYGP-TVMAPRILLEDLYKVPGATARVAVLISKEGAMIELLQPQTPHVQQTPPDRLLYGHSGIRELGLVLDDIDDFFEKVRAAGYRTQTDYVWPCANMGRSFIFYDKDGNMIQIWEHAVDA 158          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: A0A0D4ZZW6_9SPHN (VOC domain-containing protein n=2 Tax=Sphingomonas sp. JE1 TaxID=1628059 RepID=A0A0D4ZZW6_9SPHN)

HSP 1 Score: 178 bits (452), Expect = 8.250e-55
Identity = 83/142 (58.45%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWEHSDKA 426
            I +W D+MGFE  V+  IPDG    PD      LL+D++KV GA + +A+L S EGA+IEL E   P   +TPPE LRY  TG HELGLV++ ID FFEKVRA GYETQTEYVW CA +G++FLFYD DGN+IQ+WEH   A
Sbjct:   17 IRMWEDLMGFETKVKMTIPDGDDWAPDVMAPRALLEDLYKVPGATATVAVLLSKEGAMIELLEPHVPTTRQTPPEQLRYADTGIHELGLVMEGIDDFFEKVRAQGYETQTEYVWPCATMGKTFLFYDPDGNLIQIWEHGPDA 158          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: A0A7R7CHK9_9HYPH (VOC domain-containing protein n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A7R7CHK9_9HYPH)

HSP 1 Score: 176 bits (446), Expect = 6.330e-54
Identity = 85/145 (58.62%), Postives = 104/145 (71.72%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWEHSDKAGWK 435
            + LW DV+GF +     IPDG      T M  E LDDIF V+GARS+MALL+S++GA+IELQ    P IERTPP+NLRY HTG HELG  V+DID +FE++RAAGYETQT YVW  A  G+SFLFYD+DGN+IQ  E    + W+
Sbjct:   18 LRLWIDVLGFTLTHRGFIPDGRRGQSGTRMPAETLDDIFGVEGARSEMALLTSSDGAMIELQSPLVPKIERTPPQNLRYRHTGIHELGFQVEDIDGWFERIRAAGYETQTNYVWPWAINGKSFLFYDQDGNLIQFCEQKGTSSWR 162          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: A0A6M2BXV1_9GAMM (VOC family protein n=1 Tax=Solimonas terrae TaxID=1396819 RepID=A0A6M2BXV1_9GAMM)

HSP 1 Score: 169 bits (428), Expect = 2.850e-51
Identity = 76/137 (55.47%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWE 411
            I  WR++MGF +AV T IPDG   GP  +    L+ D F  + AR+ +AL++SA+GA+IEL   E+P++E TP   L Y HTG HEL L V DID FF+KVR AG+  QT+YVW CAN+GRSF+FYD +GNMIQ+WE
Sbjct:   17 IDFWREIMGFTLAVRTSIPDGDAAGPTVFAPRSLMRDTFGDESARATVALMTSADGAMIELLAPEHPSVESTPAAQLLYRHTGIHELALAVSDIDVFFDKVRRAGHRLQTDYVWSCANLGRSFIFYDPEGNMIQIWE 153          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: UPI001BAA245C (VOC family protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI001BAA245C)

HSP 1 Score: 166 bits (419), Expect = 6.650e-50
Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWE 411
            + LWRDV+GF + V+  IPDG   GP+ Y   +LLD I   +G++S+M ++ SAEGA++ELQEC  P +++ P E + Y  TG  EL L V +ID +FEKVR AGY+TQT+ VW CANI RSFLFYD+DGN+IQM E
Sbjct:   17 LRLWRDVLGFNVRVDMTIPDGQASGPNVYFSGDLLDQILGARGSKSRMVIVWSAEGAVVELQECATPKLQKRPSERVGYRETGILELALQVKNIDGWFEKVRGAGYKTQTDGVWSCANILRSFLFYDQDGNLIQMCE 153          
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Match: A0A848LAT8_9ACTN (VOC family protein n=1 Tax=Gordonia asplenii TaxID=2725283 RepID=A0A848LAT8_9ACTN)

HSP 1 Score: 159 bits (401), Expect = 4.210e-47
Identity = 75/140 (53.57%), Postives = 100/140 (71.43%), Query Frame = 1
Query:    1 IHLWRDVMGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAE--GALIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYETQTEYVWQCANIGRSFLFYDKDGNMIQMWEH 414
            + L+RD++GF++  +T+IPD P     T+   + LDDIFKV+G++S+M LL+  E  G  +E Q+  NP ++R P E LRY HTG  ELG  V DID +FEKVR+AGYETQTEYVW+   I RSFLFYD DGNM+Q+ E+
Sbjct:   17 LKLYRDILGFKVVTDTIIPDRPE---GTFFDQKTLDDIFKVEGSKSRMVLLAPPEVDGTFLEFQQPLNPPVQRKPKETLRYAHTGISELGFEVTDIDQWFEKVRSAGYETQTEYVWEAGGIVRSFLFYDPDGNMVQLCEN 153          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125590.5179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A031JIY0_9SPHN1.930e-8076.39Glyoxalase/bleomycin resistance protein/dioxygenas... [more]
UPI001BAF8B506.450e-7972.92VOC family protein n=1 Tax=Sphingobium phenoxybenz... [more]
UPI0012E88E9B2.810e-7872.60VOC family protein n=1 Tax=Sphingomonas profundi T... [more]
UPI00167346DE4.340e-7772.22VOC family protein n=2 Tax=Novosphingobium colocas... [more]
A0A1C6NMS7_9BURK2.260e-5961.54Catechol 2,3-dioxygenase n=1 Tax=Variovorax sp. HW... [more]
A0A0D4ZZW6_9SPHN8.250e-5558.45VOC domain-containing protein n=2 Tax=Sphingomonas... [more]
A0A7R7CHK9_9HYPH6.330e-5458.62VOC domain-containing protein n=3 Tax=Mesorhizobiu... [more]
A0A6M2BXV1_9GAMM2.850e-5155.47VOC family protein n=1 Tax=Solimonas terrae TaxID=... [more]
UPI001BAA245C6.650e-5054.74VOC family protein n=1 Tax=Bradyrhizobium tropicia... [more]
A0A848LAT8_9ACTN4.210e-4753.57VOC family protein n=1 Tax=Gordonia asplenii TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125590contigM-pyrifera_M_contig125590:2..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score228.4
Seed ortholog evalue2e-57
Seed eggNOG ortholog158500.BV97_04941
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lactoylglutathione lyase activity
EggNOG OGsCOG0346@1,COG0346@2
COG Functional cat.E
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size417
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.9120262-UTR-M-pyrifera_M_contig125590:1..221622815771.9120262-UTR-M-pyrifera_M_contig125590:1..22Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125590 2..22 +
1692277561.9988208-UTR-M-pyrifera_M_contig125590:1..221692277561.9988208-UTR-M-pyrifera_M_contig125590:1..22Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125590 2..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.9247978-CDS-M-pyrifera_M_contig125590:22..4391622815771.9247978-CDS-M-pyrifera_M_contig125590:22..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125590 23..439 +
1692277562.0119603-CDS-M-pyrifera_M_contig125590:22..4391692277562.0119603-CDS-M-pyrifera_M_contig125590:22..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125590 23..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125590.5179.1prot_M-pyrifera_M_contig125590.5179.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125590 23..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125590.5179.1

>prot_M-pyrifera_M_contig125590.5179.1 ID=prot_M-pyrifera_M_contig125590.5179.1|Name=mRNA_M-pyrifera_M_contig125590.5179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MGFEIAVETVIPDGPGPGPDTYMYPELLDDIFKVKGARSKMALLSSAEGA
LIELQECENPAIERTPPENLRYGHTGFHELGLVVDDIDAFFEKVRAAGYE
TQTEYVWQCANIGRSFLFYDKDGNMIQMWEHSDKAGWK*
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mRNA from alignment at M-pyrifera_M_contig125590:2..439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125590.5179.1 ID=mRNA_M-pyrifera_M_contig125590.5179.1|Name=mRNA_M-pyrifera_M_contig125590.5179.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig125590:2..439+ (Macrocystis pyrifera P11B4 male)
ATTCATCTGTGGCGCGATGTGATGGGGTTCGAAATCGCGGTGGAAACCGT GATTCCCGACGGCCCCGGTCCCGGCCCCGATACGTACATGTATCCGGAAC TGCTCGACGATATTTTCAAGGTCAAAGGTGCGCGTTCGAAGATGGCCTTG CTGAGTTCGGCCGAAGGTGCGTTGATTGAATTGCAGGAATGCGAGAACCC GGCGATCGAGCGCACGCCACCGGAAAACCTGCGCTACGGGCATACCGGGT TTCATGAACTCGGTCTCGTCGTCGACGACATCGACGCGTTCTTCGAGAAG GTCCGTGCGGCGGGTTACGAAACCCAAACGGAGTATGTCTGGCAGTGTGC GAACATCGGACGGTCATTTCTGTTCTACGATAAAGACGGCAACATGATCC AGATGTGGGAACACAGCGACAAGGCCGGCTGGAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125590:2..439+

>mRNA_M-pyrifera_M_contig125590.5179.1 ID=mRNA_M-pyrifera_M_contig125590.5179.1|Name=mRNA_M-pyrifera_M_contig125590.5179.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig125590:2..439+ (Macrocystis pyrifera P11B4 male)
ATGGGGTTCGAAATCGCGGTGGAAACCGTGATTCCCGACGGCCCCGGTCC
CGGCCCCGATACGTACATGTATCCGGAACTGCTCGACGATATTTTCAAGG
TCAAAGGTGCGCGTTCGAAGATGGCCTTGCTGAGTTCGGCCGAAGGTGCG
TTGATTGAATTGCAGGAATGCGAGAACCCGGCGATCGAGCGCACGCCACC
GGAAAACCTGCGCTACGGGCATACCGGGTTTCATGAACTCGGTCTCGTCG
TCGACGACATCGACGCGTTCTTCGAGAAGGTCCGTGCGGCGGGTTACGAA
ACCCAAACGGAGTATGTCTGGCAGTGTGCGAACATCGGACGGTCATTTCT
GTTCTACGATAAAGACGGCAACATGATCCAGATGTGGGAACACAGCGACA
AGGCCGGCTGGAAGTAGATGGGGTTCGAAATCGCGGTGGAAACCGTGATT
CCCGACGGCCCCGGTCCCGGCCCCGATACGTACATGTATCCGGAACTGCT
CGACGATATTTTCAAGGTCAAAGGTGCGCGTTCGAAGATGGCCTTGCTGA
GTTCGGCCGAAGGTGCGTTGATTGAATTGCAGGAATGCGAGAACCCGGCG
ATCGAGCGCACGCCACCGGAAAACCTGCGCTACGGGCATACCGGGTTTCA
TGAACTCGGTCTCGTCGTCGACGACATCGACGCGTTCTTCGAGAAGGTCC
GTGCGGCGGGTTACGAAACCCAAACGGAGTATGTCTGGCAGTGTGCGAAC
ATCGGACGGTCATTTCTGTTCTACGATAAAGACGGCAACATGATCCAGAT
GTGGGAACACAGCGACAAGGCCGGCTGGAAGTAG
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