mRNA_M-pyrifera_M_contig124796.5036.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124796.5036.1
Unique NamemRNA_M-pyrifera_M_contig124796.5036.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A6L8H367_9ACTN (YncE family protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L8H367_9ACTN)

HSP 1 Score: 104 bits (260), Expect = 5.240e-24
Identity = 56/116 (48.28%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAES 348
            VG SPRHLVLSPDD TLYATLNGE  V+ +D  TG+V+DRV TG                                       DTA  PIGITYD  NDEVWV+ YSG IHV+AE+
Sbjct:  340 VGLSPRHLVLSPDDRTLYATLNGEDAVVAVDVETGDVVDRVRTGHRPRSIDISDDGTALYIVNYRSDTMYKIGTGDLAVLQQFDTAPRPIGITYDPLNDEVWVAAYSGAIHVFAET 455          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A6L7NC49_9ACTN (YncE family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7NC49_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 2.720e-22
Identity = 55/118 (46.61%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAESAS 354
            VG SPRHLVLSPD  TLYATLNGE  V+ +D  +G+V+ R  TG A                                     DT   PIGITYD FN+EVWVS YSG IHVYAE A+
Sbjct:  301 VGISPRHLVLSPDGRTLYATLNGEDAVVAVDLDSGQVIRRARTGQAPRSIDISSDGTALYVVNYKSHTVSKLRARDFTILQELDTTPRPIGITYDPFNNEVWVSTYSGTIHVYAEEAT 418          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A7K2B7H6_9ACTN (YncE family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B7H6_9ACTN)

HSP 1 Score: 94.7 bits (234), Expect = 1.710e-20
Identity = 52/115 (45.22%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAE 345
            VG +PRHLVLSPDD TLY TLN E  V+ +D  +G+V+ R  TG A                                     DT   PIGITYD FN+EVWVS YSG IHVYAE
Sbjct:  297 VGITPRHLVLSPDDKTLYVTLNREHAVVAVDLDSGQVIRRARTGRAPRSMDISSDGTALYVVNYESNTMSKIRTGDFAILQEFDTTPRPIGITYDPFNNEVWVSTYSGTIHVYAE 411          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: UPI0016868A88 (YncE family protein n=2 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016868A88)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-12
Identity = 65/115 (56.52%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAE 345
            VG  PRHL LSPD+  LYA+LN EGT+ KID +T E   +V TG AXXXXXXXXXXXXXXXXXXXXX                 T  HPIGITYD    +VWV CYSG I ++ +
Sbjct:  322 VGAGPRHLNLSPDNRYLYASLNSEGTIAKIDLSTNE-WQKVRTGNAXXXXXXXXXXXXXXXXXXXXXTVSKVRTSDLKVLQSLPTDTHPIGITYDPDTQQVWVVCYSGSIMIFQD 435          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: UPI001F393F90 (YncE family protein n=1 Tax=Nostoc sp. CMAA1605 TaxID=2055159 RepID=UPI001F393F90)

HSP 1 Score: 68.2 bits (165), Expect = 2.130e-12
Identity = 76/115 (66.09%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAE 345
            +G SPRHL + P    LYA+LNGEG + KI+     V+D+V TG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    HPIGITYD    EVWV+CYSG I ++ +
Sbjct:    1 MGNSPRHLNIDPTGKYLYASLNGEGKIAKINLQQRRVVDKVITGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESHPIGITYDPQTREVWVACYSGNIMIFQD 115          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A6I3CU19_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3CU19_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 1.450e-11
Identity = 37/113 (32.74%), Postives = 49/113 (43.36%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVY 339
            +G +PR LV SPD  T+YATLN  G V+ +D +  +V+  VTTG A                                          PIG+TY+  ND  WV+CY G I V+
Sbjct:  248 IGPNPRALVFSPDQKTIYATLNASGKVVALDLSLNKVVKTVTTGKATRSLDISTDGTALFVVNFNSATLSKIRTSDFKVLQTVKVCPDPIGVTYEPINDRTWVACYKGSIKVF 360          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A7Y1U4N8_9ACTN (YncE family protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1U4N8_9ACTN)

HSP 1 Score: 67.0 bits (162), Expect = 1.420e-10
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIA 138
            VG+ PRH++LSPDD  LYATLNGEG V+KID  TGEV+ +V TG A
Sbjct:  338 VGRGPRHVILSPDDRVLYATLNGEGRVVKIDLETGEVIAKVRTGNA 383          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A520XX65_9ACTN (YncE family protein n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XX65_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-10
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTG 132
            VG+ PRH++LSPDD  LYATLNGEG V+KID  TGEV+ +V TG
Sbjct:  205 VGRGPRHVILSPDDRVLYATLNGEGRVVKIDLETGEVIAKVRTG 248          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A249LKA8_9ACTN (NHL repeat-containing protein n=1 Tax=Candidatus Planktophila lacus TaxID=1884913 RepID=A0A249LKA8_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 8.850e-10
Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYA 342
            +G +PR +VLSPD++ LYATLN  G VI  D AT + +  V TG  XXXXXXXXX                                 PIG+TYD    + WV+CY G I V+A
Sbjct:  251 IGSNPRAIVLSPDNTKLYATLNISGKVIAWDLATNKAIKSVATGKXXXXXXXXXXGSALYVVNFRSGTLSVVSTETMKVLQNVKVCSEPIGVTYDQTESKTWVACYGGSIKVFA 364          
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A249KQN0_9ACTN (NHL repeat-containing protein n=4 Tax=Candidatus Planktophila versatilis TaxID=1884905 RepID=A0A249KQN0_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 2.240e-9
Identity = 35/113 (30.97%), Postives = 49/113 (43.36%), Query Frame = 1
Query:    1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVY 339
            +G +PR + LSPDD TLYATLN  G VI  +    +V+  V TG++                                          PIG+TYD+  ++ WV+CY G I V+
Sbjct:  246 IGSNPRAIQLSPDDKTLYATLNISGKVIAWNLERNKVIKSVKTGLSARSLALNGDGTALFVVNFRSGTMTKLRAADLSIIQNVKVCKEPIGVTYDNETEQAWVACYEGSIKVF 358          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L8H367_9ACTN5.240e-2448.28YncE family protein n=2 Tax=Acidimicrobiia bacteri... [more]
A0A6L7NC49_9ACTN2.720e-2246.61YncE family protein n=1 Tax=Acidimicrobiia bacteri... [more]
A0A7K2B7H6_9ACTN1.710e-2045.22YncE family protein n=1 Tax=Acidimicrobiia bacteri... [more]
UPI0016868A881.010e-1256.52YncE family protein n=2 Tax=Oscillatoria sp. FACHB... [more]
UPI001F393F902.130e-1266.09YncE family protein n=1 Tax=Nostoc sp. CMAA1605 Ta... [more]
A0A6I3CU19_9ACTN1.450e-1132.74Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A7Y1U4N8_9ACTN1.420e-1067.39YncE family protein (Fragment) n=1 Tax=Acidimicrob... [more]
A0A520XX65_9ACTN1.600e-1068.18YncE family protein n=2 Tax=Acidimicrobiales bacte... [more]
A0A249LKA8_9ACTN8.850e-1040.35NHL repeat-containing protein n=1 Tax=Candidatus P... [more]
A0A249KQN0_9ACTN2.240e-930.97NHL repeat-containing protein n=4 Tax=Candidatus P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124796contigM-pyrifera_M_contig124796:161..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.8849525-CDS-M-pyrifera_M_contig124796:160..5171622815764.8849525-CDS-M-pyrifera_M_contig124796:160..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124796 161..517 -
1692277558.8041303-CDS-M-pyrifera_M_contig124796:160..5171692277558.8041303-CDS-M-pyrifera_M_contig124796:160..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124796 161..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124796.5036.1prot_M-pyrifera_M_contig124796.5036.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124796 161..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124796.5036.1

>prot_M-pyrifera_M_contig124796.5036.1 ID=prot_M-pyrifera_M_contig124796.5036.1|Name=mRNA_M-pyrifera_M_contig124796.5036.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAPRSM
AMSTDGTSLYVVNYESDTMSKVRTSDFEILQEFDTAHHPIGITYDSFNDE
VWVSCYSGVIHVYAESAS*
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mRNA from alignment at M-pyrifera_M_contig124796:161..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124796.5036.1 ID=mRNA_M-pyrifera_M_contig124796.5036.1|Name=mRNA_M-pyrifera_M_contig124796.5036.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig124796:161..517- (Macrocystis pyrifera P11B4 male)
GTCGGGCAGTCGCCTCGGCACCTCGTGCTGAGCCCCGACGACTCGACGCT CTACGCCACGCTCAACGGCGAGGGCACCGTGATCAAGATCGACACCGCCA CCGGCGAGGTGCTCGATCGGGTGACCACCGGCATCGCCCCGCGGAGCATG GCGATGTCGACAGACGGCACCTCGCTCTACGTGGTCAACTACGAGTCCGA CACGATGTCGAAGGTCCGAACCTCCGACTTCGAGATCCTGCAGGAGTTCG ACACCGCGCACCATCCGATCGGCATCACCTACGACTCGTTCAACGACGAG GTCTGGGTGTCGTGCTATTCGGGCGTCATCCACGTGTACGCCGAGTCCGC CTCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124796:161..517-

>mRNA_M-pyrifera_M_contig124796.5036.1 ID=mRNA_M-pyrifera_M_contig124796.5036.1|Name=mRNA_M-pyrifera_M_contig124796.5036.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig124796:161..517- (Macrocystis pyrifera P11B4 male)
GTCGGGCAGTCGCCTCGGCACCTCGTGCTGAGCCCCGACGACTCGACGCT
CTACGCCACGCTCAACGGCGAGGGCACCGTGATCAAGATCGACACCGCCA
CCGGCGAGGTGCTCGATCGGGTGACCACCGGCATCGCCCCGCGGAGCATG
GCGATGTCGACAGACGGCACCTCGCTCTACGTGGTCAACTACGAGTCCGA
CACGATGTCGAAGGTCCGAACCTCCGACTTCGAGATCCTGCAGGAGTTCG
ACACCGCGCACCATCCGATCGGCATCACCTACGACTCGTTCAACGACGAG
GTCTGGGTGTCGTGCTATTCGGGCGTCATCCACGTGTACGCCGAGTCCGC
CTCCTGAGTCGGGCAGTCGCCTCGGCACCTCGTGCTGAGCCCCGACGACT
CGACGCTCTACGCCACGCTCAACGGCGAGGGCACCGTGATCAAGATCGAC
ACCGCCACCGGCGAGGTGCTCGATCGGGTGACCACCGGCATCGCCCCGCG
GAGCATGGCGATGTCGACAGACGGCACCTCGCTCTACGTGGTCAACTACG
AGTCCGACACGATGTCGAAGGTCCGAACCTCCGACTTCGAGATCCTGCAG
GAGTTCGACACCGCGCACCATCCGATCGGCATCACCTACGACTCGTTCAA
CGACGAGGTCTGGGTGTCGTGCTATTCGGGCGTCATCCACGTGTACGCCG
AGTCCGCCTCCTGA
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