mRNA_M-pyrifera_M_contig124796.5036.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A6L8H367_9ACTN (YncE family protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L8H367_9ACTN) HSP 1 Score: 104 bits (260), Expect = 5.240e-24 Identity = 56/116 (48.28%), Postives = 63/116 (54.31%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAES 348
VG SPRHLVLSPDD TLYATLNGE V+ +D TG+V+DRV TG DTA PIGITYD NDEVWV+ YSG IHV+AE+
Sbjct: 340 VGLSPRHLVLSPDDRTLYATLNGEDAVVAVDVETGDVVDRVRTGHRPRSIDISDDGTALYIVNYRSDTMYKIGTGDLAVLQQFDTAPRPIGITYDPLNDEVWVAAYSGAIHVFAET 455
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A6L7NC49_9ACTN (YncE family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7NC49_9ACTN) HSP 1 Score: 99.8 bits (247), Expect = 2.720e-22 Identity = 55/118 (46.61%), Postives = 62/118 (52.54%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAESAS 354
VG SPRHLVLSPD TLYATLNGE V+ +D +G+V+ R TG A DT PIGITYD FN+EVWVS YSG IHVYAE A+
Sbjct: 301 VGISPRHLVLSPDGRTLYATLNGEDAVVAVDLDSGQVIRRARTGQAPRSIDISSDGTALYVVNYKSHTVSKLRARDFTILQELDTTPRPIGITYDPFNNEVWVSTYSGTIHVYAEEAT 418
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A7K2B7H6_9ACTN (YncE family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B7H6_9ACTN) HSP 1 Score: 94.7 bits (234), Expect = 1.710e-20 Identity = 52/115 (45.22%), Postives = 59/115 (51.30%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAE 345
VG +PRHLVLSPDD TLY TLN E V+ +D +G+V+ R TG A DT PIGITYD FN+EVWVS YSG IHVYAE
Sbjct: 297 VGITPRHLVLSPDDKTLYVTLNREHAVVAVDLDSGQVIRRARTGRAPRSMDISSDGTALYVVNYESNTMSKIRTGDFAILQEFDTTPRPIGITYDPFNNEVWVSTYSGTIHVYAE 411
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: UPI0016868A88 (YncE family protein n=2 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016868A88) HSP 1 Score: 73.2 bits (178), Expect = 1.010e-12 Identity = 65/115 (56.52%), Postives = 74/115 (64.35%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAE 345
VG PRHL LSPD+ LYA+LN EGT+ KID +T E +V TG AXXXXXXXXXXXXXXXXXXXXX T HPIGITYD +VWV CYSG I ++ +
Sbjct: 322 VGAGPRHLNLSPDNRYLYASLNSEGTIAKIDLSTNE-WQKVRTGNAXXXXXXXXXXXXXXXXXXXXXTVSKVRTSDLKVLQSLPTDTHPIGITYDPDTQQVWVVCYSGSIMIFQD 435
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: UPI001F393F90 (YncE family protein n=1 Tax=Nostoc sp. CMAA1605 TaxID=2055159 RepID=UPI001F393F90) HSP 1 Score: 68.2 bits (165), Expect = 2.130e-12 Identity = 76/115 (66.09%), Postives = 87/115 (75.65%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYAE 345
+G SPRHL + P LYA+LNGEG + KI+ V+D+V TG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HPIGITYD EVWV+CYSG I ++ +
Sbjct: 1 MGNSPRHLNIDPTGKYLYASLNGEGKIAKINLQQRRVVDKVITGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESHPIGITYDPQTREVWVACYSGNIMIFQD 115
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A6I3CU19_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3CU19_9ACTN) HSP 1 Score: 69.7 bits (169), Expect = 1.450e-11 Identity = 37/113 (32.74%), Postives = 49/113 (43.36%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVY 339
+G +PR LV SPD T+YATLN G V+ +D + +V+ VTTG A PIG+TY+ ND WV+CY G I V+
Sbjct: 248 IGPNPRALVFSPDQKTIYATLNASGKVVALDLSLNKVVKTVTTGKATRSLDISTDGTALFVVNFNSATLSKIRTSDFKVLQTVKVCPDPIGVTYEPINDRTWVACYKGSIKVF 360
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A7Y1U4N8_9ACTN (YncE family protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1U4N8_9ACTN) HSP 1 Score: 67.0 bits (162), Expect = 1.420e-10 Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIA 138
VG+ PRH++LSPDD LYATLNGEG V+KID TGEV+ +V TG A
Sbjct: 338 VGRGPRHVILSPDDRVLYATLNGEGRVVKIDLETGEVIAKVRTGNA 383
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A520XX65_9ACTN (YncE family protein n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XX65_9ACTN) HSP 1 Score: 66.6 bits (161), Expect = 1.600e-10 Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTG 132
VG+ PRH++LSPDD LYATLNGEG V+KID TGEV+ +V TG
Sbjct: 205 VGRGPRHVILSPDDRVLYATLNGEGRVVKIDLETGEVIAKVRTG 248
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A249LKA8_9ACTN (NHL repeat-containing protein n=1 Tax=Candidatus Planktophila lacus TaxID=1884913 RepID=A0A249LKA8_9ACTN) HSP 1 Score: 64.7 bits (156), Expect = 8.850e-10 Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVYA 342
+G +PR +VLSPD++ LYATLN G VI D AT + + V TG XXXXXXXXX PIG+TYD + WV+CY G I V+A
Sbjct: 251 IGSNPRAIVLSPDNTKLYATLNISGKVIAWDLATNKAIKSVATGKXXXXXXXXXXGSALYVVNFRSGTLSVVSTETMKVLQNVKVCSEPIGVTYDQTESKTWVACYGGSIKVFA 364
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Match: A0A249KQN0_9ACTN (NHL repeat-containing protein n=4 Tax=Candidatus Planktophila versatilis TaxID=1884905 RepID=A0A249KQN0_9ACTN) HSP 1 Score: 63.5 bits (153), Expect = 2.240e-9 Identity = 35/113 (30.97%), Postives = 49/113 (43.36%), Query Frame = 1
Query: 1 VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAHHPIGITYDSFNDEVWVSCYSGVIHVY 339
+G +PR + LSPDD TLYATLN G VI + +V+ V TG++ PIG+TYD+ ++ WV+CY G I V+
Sbjct: 246 IGSNPRAIQLSPDDKTLYATLNISGKVIAWNLERNKVIKSVKTGLSARSLALNGDGTALFVVNFRSGTMTKLRAADLSIIQNVKVCKEPIGVTYDNETEQAWVACYEGSIKVF 358 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124796.5036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124796.5036.1 >prot_M-pyrifera_M_contig124796.5036.1 ID=prot_M-pyrifera_M_contig124796.5036.1|Name=mRNA_M-pyrifera_M_contig124796.5036.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp VGQSPRHLVLSPDDSTLYATLNGEGTVIKIDTATGEVLDRVTTGIAPRSMback to top mRNA from alignment at M-pyrifera_M_contig124796:161..517- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124796.5036.1 ID=mRNA_M-pyrifera_M_contig124796.5036.1|Name=mRNA_M-pyrifera_M_contig124796.5036.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig124796:161..517- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124796:161..517- >mRNA_M-pyrifera_M_contig124796.5036.1 ID=mRNA_M-pyrifera_M_contig124796.5036.1|Name=mRNA_M-pyrifera_M_contig124796.5036.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig124796:161..517- (Macrocystis pyrifera P11B4 male)back to top |