mRNA_M-pyrifera_M_contig124649.5013.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: A0A653XCT5_9PSED (Short chain dehydrogenase n=1 Tax=Pseudomonas sp. 8Z TaxID=2653166 RepID=A0A653XCT5_9PSED) HSP 1 Score: 61.6 bits (148), Expect = 3.110e-8 Identity = 49/156 (31.41%), Postives = 76/156 (48.72%), Query Frame = 1
Query: 1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIATP----------EVLADPGNAAIAIPVPQCASDMLFHAATR 438
GG+DV+ N + ++ A AD QE Q+I+ N + +AA+P L SG + SS + P +RS Y ASK ALHG ++LR+ELK + V++ ++ G AT V A P A + PQ ++ ++H A +
Sbjct: 90 GGIDVLVNNAGVTHRS-----AFADTRQEVFQRIMAVNYFGALHCTQAALPSLIARSGQIIVLSSLSGIAPLLYRSAYNASKHALHGLFETLRYELKGS---GVNVMLVCPGFTATDLRKNALVGDGSVAAQPALAMGKVASPQDVAEAIYHGALK 237
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: U1ZYQ8_9PSED (Short-chain dehydrogenase (Fragment) n=8 Tax=Pseudomonas TaxID=286 RepID=U1ZYQ8_9PSED) HSP 1 Score: 57.8 bits (138), Expect = 6.150e-7 Identity = 47/156 (30.13%), Postives = 74/156 (47.44%), Query Frame = 1
Query: 1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIATP----------EVLADPGNAAIAIPVPQCASDMLFHAATR 438
GG+DV+ N I ++ AD + E Q+++ N + +AA+P L G + SS + P +RS Y ASK ALHG ++LR+ELK + V++ ++ G AT V A P A + PQ ++ ++H A R
Sbjct: 60 GGIDVLVNNAGITHRSTF-----ADTSLEVFQRVMAVNYFGALHCTQAALPSLIARGGQIIVLSSLSGIAPLLYRSAYNASKHALHGLFETLRYELKGS---GVNVMLVCPGFTATDLRKNALVGDGSVAAQPPLAMGKVASPQDVAEAIYHGALR 207
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: A9UT09_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UT09_MONBE) HSP 1 Score: 57.0 bits (136), Expect = 1.010e-6 Identity = 37/116 (31.90%), Postives = 56/116 (48.28%), Query Frame = 1
Query: 1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIAT 348
GG+D V NH L ++ + N S+I +A A+PYL ++G + SS L + Y A+K ALHG+ +SLRFEL + N+ + + +LG I T
Sbjct: 79 GGIDTVILNHVAGYWGNWLTDMADNNISSHLEWYFGVNTYSYIYVAAHALPYLEATNGRLAVVSSAAGLLGLPRVATYAATKHALHGFFNSLRFELA-ERASNISMTLAILGSIDT 193
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: UPI0019653786 (SDR family oxidoreductase n=1 Tax=Pseudomonas sp. UL073 TaxID=2809017 RepID=UPI0019653786) HSP 1 Score: 53.9 bits (128), Expect = 1.660e-5 Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1
Query: 1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIAT 348
GG+DV+ N I ++ +A D A Q+I+ N + + +AA+P L Q G + SS + P +RS Y ASK ALHG D+LR+E+K + V++ ++ G AT
Sbjct: 90 GGVDVLINNAGITHRST---FAETDLAVF--QRIMAVNYFGALHLTKAALPSLLQRQGQIIVLSSLSGFTPLLYRSAYNASKHALHGLFDTLRYEIKGS---GVNVMLVCPGFTAT 197
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: A0A0A1YDL4_9PSED (Short-chain dehydrogenase n=6 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0A1YDL4_9PSED) HSP 1 Score: 53.5 bits (127), Expect = 2.300e-5 Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = 1
Query: 1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIATP----------EVLADPGNAAIAIPVPQCASDMLFHAATR 438
GG+DV+ N I ++ + D Q+++ N + +AA+P L + SG + SS + P +RS Y ASK ALHG ++LR+ELK + V++ ++ G AT V A P A + PQ +D ++ AA +
Sbjct: 90 GGIDVLVNNAGITHRSSFV-----DTELAVFQRVMAVNYFGALHCTQAALPSLIERSGQIIVLSSLSGFAPLLYRSAYNASKHALHGLFETLRYELKGS---GVNVMLVCPGFTATDLRKNALVGDGSVAAQPPLAMGKVASPQDVADAIYLAALK 237
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: A0A379IQM8_PSEME (Short chain dehydrogenase n=67 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A379IQM8_PSEME) HSP 1 Score: 52.0 bits (123), Expect = 9.100e-5 Identity = 41/135 (30.37%), Postives = 66/135 (48.89%), Query Frame = 1
Query: 1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIATP---EVLADPGNAAIAIPV 396
GG+DV+ N I ++ A+ + E Q+++ N + +AA+P L G + SS + P +RS Y ASK ALHG ++LR+ELK + V++ ++ G AT L G+ A P+
Sbjct: 148 GGIDVLVNNAGITHRSTF-----AETSLEVFQRVMAVNYFGALHCTQAALPSLIARRGQVIVLSSLSGIAPLLYRSAYNASKHALHGMFETLRYELKGS---GVNVMLVCPGFTATDLRKNALVGDGSVAAQAPL 274 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124649.5013.1 >prot_M-pyrifera_M_contig124649.5013.1 ID=prot_M-pyrifera_M_contig124649.5013.1|Name=mRNA_M-pyrifera_M_contig124649.5013.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIback to top mRNA from alignment at M-pyrifera_M_contig124649:12..515+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124649.5013.1 ID=mRNA_M-pyrifera_M_contig124649.5013.1|Name=mRNA_M-pyrifera_M_contig124649.5013.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig124649:12..515+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124649:12..515+ >mRNA_M-pyrifera_M_contig124649.5013.1 ID=mRNA_M-pyrifera_M_contig124649.5013.1|Name=mRNA_M-pyrifera_M_contig124649.5013.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig124649:12..515+ (Macrocystis pyrifera P11B4 male)back to top |