mRNA_M-pyrifera_M_contig124649.5013.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124649.5013.1
Unique NamemRNA_M-pyrifera_M_contig124649.5013.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: A0A653XCT5_9PSED (Short chain dehydrogenase n=1 Tax=Pseudomonas sp. 8Z TaxID=2653166 RepID=A0A653XCT5_9PSED)

HSP 1 Score: 61.6 bits (148), Expect = 3.110e-8
Identity = 49/156 (31.41%), Postives = 76/156 (48.72%), Query Frame = 1
Query:    1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIATP----------EVLADPGNAAIAIPVPQCASDMLFHAATR 438
            GG+DV+  N  +  ++     A AD  QE  Q+I+  N    +   +AA+P L   SG   + SS +   P  +RS Y ASK ALHG  ++LR+ELK +    V++ ++  G  AT            V A P  A   +  PQ  ++ ++H A +
Sbjct:   90 GGIDVLVNNAGVTHRS-----AFADTRQEVFQRIMAVNYFGALHCTQAALPSLIARSGQIIVLSSLSGIAPLLYRSAYNASKHALHGLFETLRYELKGS---GVNVMLVCPGFTATDLRKNALVGDGSVAAQPALAMGKVASPQDVAEAIYHGALK 237          
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: U1ZYQ8_9PSED (Short-chain dehydrogenase (Fragment) n=8 Tax=Pseudomonas TaxID=286 RepID=U1ZYQ8_9PSED)

HSP 1 Score: 57.8 bits (138), Expect = 6.150e-7
Identity = 47/156 (30.13%), Postives = 74/156 (47.44%), Query Frame = 1
Query:    1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIATP----------EVLADPGNAAIAIPVPQCASDMLFHAATR 438
            GG+DV+  N  I  ++       AD + E  Q+++  N    +   +AA+P L    G   + SS +   P  +RS Y ASK ALHG  ++LR+ELK +    V++ ++  G  AT            V A P  A   +  PQ  ++ ++H A R
Sbjct:   60 GGIDVLVNNAGITHRSTF-----ADTSLEVFQRVMAVNYFGALHCTQAALPSLIARGGQIIVLSSLSGIAPLLYRSAYNASKHALHGLFETLRYELKGS---GVNVMLVCPGFTATDLRKNALVGDGSVAAQPPLAMGKVASPQDVAEAIYHGALR 207          
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: A9UT09_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UT09_MONBE)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-6
Identity = 37/116 (31.90%), Postives = 56/116 (48.28%), Query Frame = 1
Query:    1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIAT 348
            GG+D V  NH        L     ++     +     N  S+I +A  A+PYL  ++G   + SS    L     + Y A+K ALHG+ +SLRFEL   +  N+ + + +LG I T
Sbjct:   79 GGIDTVILNHVAGYWGNWLTDMADNNISSHLEWYFGVNTYSYIYVAAHALPYLEATNGRLAVVSSAAGLLGLPRVATYAATKHALHGFFNSLRFELA-ERASNISMTLAILGSIDT 193          
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: UPI0019653786 (SDR family oxidoreductase n=1 Tax=Pseudomonas sp. UL073 TaxID=2809017 RepID=UPI0019653786)

HSP 1 Score: 53.9 bits (128), Expect = 1.660e-5
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1
Query:    1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIAT 348
            GG+DV+  N  I  ++    +A  D A    Q+I+  N    + + +AA+P L Q  G   + SS +   P  +RS Y ASK ALHG  D+LR+E+K +    V++ ++  G  AT
Sbjct:   90 GGVDVLINNAGITHRST---FAETDLAVF--QRIMAVNYFGALHLTKAALPSLLQRQGQIIVLSSLSGFTPLLYRSAYNASKHALHGLFDTLRYEIKGS---GVNVMLVCPGFTAT 197          
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: A0A0A1YDL4_9PSED (Short-chain dehydrogenase n=6 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0A1YDL4_9PSED)

HSP 1 Score: 53.5 bits (127), Expect = 2.300e-5
Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = 1
Query:    1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIATP----------EVLADPGNAAIAIPVPQCASDMLFHAATR 438
            GG+DV+  N  I  ++  +     D      Q+++  N    +   +AA+P L + SG   + SS +   P  +RS Y ASK ALHG  ++LR+ELK +    V++ ++  G  AT            V A P  A   +  PQ  +D ++ AA +
Sbjct:   90 GGIDVLVNNAGITHRSSFV-----DTELAVFQRVMAVNYFGALHCTQAALPSLIERSGQIIVLSSLSGFAPLLYRSAYNASKHALHGLFETLRYELKGS---GVNVMLVCPGFTATDLRKNALVGDGSVAAQPPLAMGKVASPQDVADAIYLAALK 237          
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Match: A0A379IQM8_PSEME (Short chain dehydrogenase n=67 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A379IQM8_PSEME)

HSP 1 Score: 52.0 bits (123), Expect = 9.100e-5
Identity = 41/135 (30.37%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    1 GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAIPYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAKLHNVHIGILVLGMIATP---EVLADPGNAAIAIPV 396
            GG+DV+  N  I  ++       A+ + E  Q+++  N    +   +AA+P L    G   + SS +   P  +RS Y ASK ALHG  ++LR+ELK +    V++ ++  G  AT      L   G+ A   P+
Sbjct:  148 GGIDVLVNNAGITHRSTF-----AETSLEVFQRVMAVNYFGALHCTQAALPSLIARRGQVIVLSSLSGIAPLLYRSAYNASKHALHGMFETLRYELKGS---GVNVMLVCPGFTATDLRKNALVGDGSVAAQAPL 274          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124649.5013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A653XCT5_9PSED3.110e-831.41Short chain dehydrogenase n=1 Tax=Pseudomonas sp. ... [more]
U1ZYQ8_9PSED6.150e-730.13Short-chain dehydrogenase (Fragment) n=8 Tax=Pseud... [more]
A9UT09_MONBE1.010e-631.90Predicted protein (Fragment) n=1 Tax=Monosiga brev... [more]
UPI00196537861.660e-534.48SDR family oxidoreductase n=1 Tax=Pseudomonas sp. ... [more]
A0A0A1YDL4_9PSED2.300e-529.49Short-chain dehydrogenase n=6 Tax=Pseudomonadaceae... [more]
A0A379IQM8_PSEME9.100e-530.37Short chain dehydrogenase n=67 Tax=Gammaproteobact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124649contigM-pyrifera_M_contig124649:12..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.9
Seed ortholog evalue7.8e-11
Seed eggNOG ortholog7739.XP_002611300.1
Preferred nameHSD11B1L
KEGG rclassRC00154,RC01491
KEGG koko:K15680
KEGG ReactionR02836,R03848,R04758,R04840,R09420
KEGG Pathwayko00140,ko00980,ko01100,ko05204,map00140,map00980,map01100,map05204
KEGG ModuleM00109
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0008150,GO:0008152,GO:0016229,GO:0016491,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0055114,GO:0070013
EggNOG free text desc.oxidoreductase activity
EggNOG OGs39IQV@33154,3BJRF@33208,3CX6K@33213,487AB@7711,COG1028@1,KOG1205@2759
EC1.1.1.146
COG Functional cat.Q
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.9154181-CDS-M-pyrifera_M_contig124649:11..5151622815763.9154181-CDS-M-pyrifera_M_contig124649:11..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124649 12..515 +
1692277558.4255772-CDS-M-pyrifera_M_contig124649:11..5151692277558.4255772-CDS-M-pyrifera_M_contig124649:11..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124649 12..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124649.5013.1prot_M-pyrifera_M_contig124649.5013.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124649 12..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124649.5013.1

>prot_M-pyrifera_M_contig124649.5013.1 ID=prot_M-pyrifera_M_contig124649.5013.1|Name=mRNA_M-pyrifera_M_contig124649.5013.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
GGLDVVFANHAIFDKAMLLEYANADDAQEKAQQILNTNVASFIAIARAAI
PYLHQSSGAFYITSSGTAALPCAFRSFYVASKRALHGWADSLRFELKLAK
LHNVHIGILVLGMIATPEVLADPGNAAIAIPVPQCASDMLFHAATRATQA
HIPPYLAPFATLNFFLPQ
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mRNA from alignment at M-pyrifera_M_contig124649:12..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124649.5013.1 ID=mRNA_M-pyrifera_M_contig124649.5013.1|Name=mRNA_M-pyrifera_M_contig124649.5013.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig124649:12..515+ (Macrocystis pyrifera P11B4 male)
GGTGGCTTGGATGTGGTTTTCGCAAATCACGCCATTTTTGACAAGGCCAT GCTGCTGGAGTATGCGAACGCAGACGATGCGCAAGAGAAAGCACAGCAGA TTCTGAACACGAACGTCGCTTCCTTCATCGCCATTGCCCGCGCAGCGATC CCCTACCTCCACCAATCCTCTGGAGCCTTCTACATCACTTCCTCTGGCAC TGCTGCTCTCCCCTGTGCATTTCGGTCCTTCTATGTGGCCTCAAAGAGAG CCTTGCATGGGTGGGCGGATTCGTTGCGGTTTGAATTGAAACTCGCGAAG TTGCACAATGTGCACATTGGAATCCTCGTTCTCGGCATGATCGCCACCCC AGAAGTGCTAGCAGACCCAGGAAATGCCGCCATCGCCATTCCAGTGCCAC AATGCGCCAGCGACATGCTCTTCCACGCCGCAACCAGAGCCACCCAGGCC CACATCCCTCCGTACCTCGCCCCCTTCGCCACCCTCAACTTCTTCCTCCC GCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124649:12..515+

>mRNA_M-pyrifera_M_contig124649.5013.1 ID=mRNA_M-pyrifera_M_contig124649.5013.1|Name=mRNA_M-pyrifera_M_contig124649.5013.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig124649:12..515+ (Macrocystis pyrifera P11B4 male)
GGTGGCTTGGATGTGGTTTTCGCAAATCACGCCATTTTTGACAAGGCCAT
GCTGCTGGAGTATGCGAACGCAGACGATGCGCAAGAGAAAGCACAGCAGA
TTCTGAACACGAACGTCGCTTCCTTCATCGCCATTGCCCGCGCAGCGATC
CCCTACCTCCACCAATCCTCTGGAGCCTTCTACATCACTTCCTCTGGCAC
TGCTGCTCTCCCCTGTGCATTTCGGTCCTTCTATGTGGCCTCAAAGAGAG
CCTTGCATGGGTGGGCGGATTCGTTGCGGTTTGAATTGAAACTCGCGAAG
TTGCACAATGTGCACATTGGAATCCTCGTTCTCGGCATGATCGCCACCCC
AGAAGTGCTAGCAGACCCAGGAAATGCCGCCATCGCCATTCCAGTGCCAC
AATGCGCCAGCGACATGCTCTTCCACGCCGCAACCAGAGCCACCCAGGCC
CACATCCCTCCGTACCTCGCCCCCTTCGCCACCCTCAACTTCTTCCTCCC
GCAAGGTGGCTTGGATGTGGTTTTCGCAAATCACGCCATTTTTGACAAGG
CCATGCTGCTGGAGTATGCGAACGCAGACGATGCGCAAGAGAAAGCACAG
CAGATTCTGAACACGAACGTCGCTTCCTTCATCGCCATTGCCCGCGCAGC
GATCCCCTACCTCCACCAATCCTCTGGAGCCTTCTACATCACTTCCTCTG
GCACTGCTGCTCTCCCCTGTGCATTTCGGTCCTTCTATGTGGCCTCAAAG
AGAGCCTTGCATGGGTGGGCGGATTCGTTGCGGTTTGAATTGAAACTCGC
GAAGTTGCACAATGTGCACATTGGAATCCTCGTTCTCGGCATGATCGCCA
CCCCAGAAGTGCTAGCAGACCCAGGAAATGCCGCCATCGCCATTCCAGTG
CCACAATGCGCCAGCGACATGCTCTTCCACGCCGCAACCAGAGCCACCCA
GGCCCACATCCCTCCGTACCTCGCCCCCTTCGCCACCCTCAACTTCTTCC
TCCCGCAA
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