prot_M-pyrifera_M_contig99674.22909.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig99674.22909.1
Unique Nameprot_M-pyrifera_M_contig99674.22909.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length124
Homology
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BLAST of mRNA_M-pyrifera_M_contig99674.22909.1 vs. uniprot
Match: A0A1G2JCH4_9BACT (NodB homology domain-containing protein n=1 Tax=Candidatus Staskawiczbacteria bacterium RIFOXYC1_FULL_38_18 TaxID=1802229 RepID=A0A1G2JCH4_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.370e-5
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 0 
Query:    9 WIPVPGDWDGDGIDTAASYDRQSGAWYIRNSNTPGGVDL 47
            W+PV GDWDGDG  T   Y+ ++  +Y+RNSNT G  D+
Sbjct:   45 WLPVAGDWDGDGTATIGLYNLKTSIFYLRNSNTTGVADI 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99674.22909.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1G2JCH4_9BACT3.370e-551.28NodB homology domain-containing protein n=1 Tax=Ca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 9..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99674contigM-pyrifera_M_contig99674:7..378 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99674.22909.1mRNA_M-pyrifera_M_contig99674.22909.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig99674 7..378 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig99674.22909.1 ID=prot_M-pyrifera_M_contig99674.22909.1|Name=mRNA_M-pyrifera_M_contig99674.22909.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
VFGFGRRDWIPVPGDWDGDGIDTAASYDRQSGAWYIRNSNTPGGVDLFPF
KFGGQNLVPVVGDWNDDGRDTPGVYDITSGTWYLTDVNNAGNPTIAPFQF
GAPGFTPVVGDWDDNGTDTVGVVS
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