mRNA_M-pyrifera_M_contig99674.22909.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99674.22909.1
Unique NamemRNA_M-pyrifera_M_contig99674.22909.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99674.22909.1 vs. uniprot
Match: A0A1G2JCH4_9BACT (NodB homology domain-containing protein n=1 Tax=Candidatus Staskawiczbacteria bacterium RIFOXYC1_FULL_38_18 TaxID=1802229 RepID=A0A1G2JCH4_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.370e-5
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   25 WIPVPGDWDGDGIDTAASYDRQSGAWYIRNSNTPGGVDL 141
            W+PV GDWDGDG  T   Y+ ++  +Y+RNSNT G  D+
Sbjct:   45 WLPVAGDWDGDGTATIGLYNLKTSIFYLRNSNTTGVADI 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99674.22909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1G2JCH4_9BACT3.370e-551.28NodB homology domain-containing protein n=1 Tax=Ca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99674contigM-pyrifera_M_contig99674:7..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.5775864-CDS-M-pyrifera_M_contig99674:6..3781622816913.5775864-CDS-M-pyrifera_M_contig99674:6..378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99674 7..378 +
1692278252.2214403-CDS-M-pyrifera_M_contig99674:6..3781692278252.2214403-CDS-M-pyrifera_M_contig99674:6..378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99674 7..378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99674.22909.1prot_M-pyrifera_M_contig99674.22909.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99674 7..378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99674.22909.1

>prot_M-pyrifera_M_contig99674.22909.1 ID=prot_M-pyrifera_M_contig99674.22909.1|Name=mRNA_M-pyrifera_M_contig99674.22909.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
VFGFGRRDWIPVPGDWDGDGIDTAASYDRQSGAWYIRNSNTPGGVDLFPF
KFGGQNLVPVVGDWNDDGRDTPGVYDITSGTWYLTDVNNAGNPTIAPFQF
GAPGFTPVVGDWDDNGTDTVGVVS
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mRNA from alignment at M-pyrifera_M_contig99674:7..378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99674.22909.1 ID=mRNA_M-pyrifera_M_contig99674.22909.1|Name=mRNA_M-pyrifera_M_contig99674.22909.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig99674:7..378+ (Macrocystis pyrifera P11B4 male)
GTCTTCGGTTTCGGACGCCGCGATTGGATTCCCGTTCCGGGTGACTGGGA
TGGCGACGGGATCGACACGGCGGCCAGCTACGACCGGCAAAGCGGTGCCT
GGTATATTCGAAACAGCAACACGCCTGGTGGAGTGGATTTGTTCCCCTTC
AAATTCGGAGGTCAAAACCTTGTTCCGGTTGTCGGCGATTGGAATGACGA
TGGTCGAGACACCCCGGGCGTGTACGACATTACCAGCGGTACCTGGTACT
TGACCGACGTAAACAACGCGGGTAATCCAACCATCGCGCCGTTTCAATTC
GGGGCCCCCGGGTTTACGCCCGTGGTCGGCGATTGGGACGACAACGGAAC
AGATACCGTAGGCGTCGTCTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99674:7..378+

>mRNA_M-pyrifera_M_contig99674.22909.1 ID=mRNA_M-pyrifera_M_contig99674.22909.1|Name=mRNA_M-pyrifera_M_contig99674.22909.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig99674:7..378+ (Macrocystis pyrifera P11B4 male)
GTCTTCGGTTTCGGACGCCGCGATTGGATTCCCGTTCCGGGTGACTGGGA
TGGCGACGGGATCGACACGGCGGCCAGCTACGACCGGCAAAGCGGTGCCT
GGTATATTCGAAACAGCAACACGCCTGGTGGAGTGGATTTGTTCCCCTTC
AAATTCGGAGGTCAAAACCTTGTTCCGGTTGTCGGCGATTGGAATGACGA
TGGTCGAGACACCCCGGGCGTGTACGACATTACCAGCGGTACCTGGTACT
TGACCGACGTAAACAACGCGGGTAATCCAACCATCGCGCCGTTTCAATTC
GGGGCCCCCGGGTTTACGCCCGTGGTCGGCGATTGGGACGACAACGGAAC
AGATACCGTAGGCGTCGTCTCGGTCTTCGGTTTCGGACGCCGCGATTGGA
TTCCCGTTCCGGGTGACTGGGATGGCGACGGGATCGACACGGCGGCCAGC
TACGACCGGCAAAGCGGTGCCTGGTATATTCGAAACAGCAACACGCCTGG
TGGAGTGGATTTGTTCCCCTTCAAATTCGGAGGTCAAAACCTTGTTCCGG
TTGTCGGCGATTGGAATGACGATGGTCGAGACACCCCGGGCGTGTACGAC
ATTACCAGCGGTACCTGGTACTTGACCGACGTAAACAACGCGGGTAATCC
AACCATCGCGCCGTTTCAATTCGGGGCCCCCGGGTTTACGCCCGTGGTCG
GCGATTGGGACGACAACGGAACAGATACCGTAGGCGTCGTCTCG
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