prot_M-pyrifera_M_contig99489.22888.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig99489.22888.1
Unique Nameprot_M-pyrifera_M_contig99489.22888.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length142
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99489.22888.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..142
e-value: 2.4E-11
score: 45.4
NoneNo IPR availablePANTHERPTHR22850:SF200coord: 2..140
NoneNo IPR availablePANTHERPTHR22850WD40 REPEAT FAMILYcoord: 2..140
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 48..89
score: 8.94
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 48..89
score: 8.971
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 14..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99489contigM-pyrifera_M_contig99489:252..677 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99489.22888.1mRNA_M-pyrifera_M_contig99489.22888.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig99489 246..677 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig99489.22888.1 ID=prot_M-pyrifera_M_contig99489.22888.1|Name=mRNA_M-pyrifera_M_contig99489.22888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MPGVERIAVTKTDSETLYVWDTGALGGLERDKPLPKVVPCSRPTLGLIGH
SSDAMYALALCPRDHRVLSGAGDGSILMWSLDHASIASLSSPTPSTPTPL
SSTRPSVLGGHRRSIGAPRLEPFARFKGHVKAVEDVVFMPVT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf