mRNA_M-pyrifera_M_contig99489.22888.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99489.22888.1
Unique NamemRNA_M-pyrifera_M_contig99489.22888.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99489.22888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99489contigM-pyrifera_M_contig99489:246..677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.1
Seed ortholog evalue2.9e-14
Seed eggNOG ortholog42345.XP_008793220.1
KEGG koko:K10752
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD-40 repeat-containing protein
EggNOG OGs37M78@33090,3GDJ8@35493,3KKWE@4447,KOG0264@1,KOG0264@2759
COG Functional cat.B
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size432
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.533818-UTR-M-pyrifera_M_contig99489:245..2511622816912.533818-UTR-M-pyrifera_M_contig99489:245..251Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99489 246..251 +
1692278251.5697465-UTR-M-pyrifera_M_contig99489:245..2511692278251.5697465-UTR-M-pyrifera_M_contig99489:245..251Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99489 246..251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.5486283-CDS-M-pyrifera_M_contig99489:251..6771622816912.5486283-CDS-M-pyrifera_M_contig99489:251..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99489 252..677 +
1692278251.5849328-CDS-M-pyrifera_M_contig99489:251..6771692278251.5849328-CDS-M-pyrifera_M_contig99489:251..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99489 252..677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99489.22888.1prot_M-pyrifera_M_contig99489.22888.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99489 252..677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99489.22888.1

>prot_M-pyrifera_M_contig99489.22888.1 ID=prot_M-pyrifera_M_contig99489.22888.1|Name=mRNA_M-pyrifera_M_contig99489.22888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MPGVERIAVTKTDSETLYVWDTGALGGLERDKPLPKVVPCSRPTLGLIGH
SSDAMYALALCPRDHRVLSGAGDGSILMWSLDHASIASLSSPTPSTPTPL
SSTRPSVLGGHRRSIGAPRLEPFARFKGHVKAVEDVVFMPVT
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mRNA from alignment at M-pyrifera_M_contig99489:246..677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99489.22888.1 ID=mRNA_M-pyrifera_M_contig99489.22888.1|Name=mRNA_M-pyrifera_M_contig99489.22888.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig99489:246..677+ (Macrocystis pyrifera P11B4 male)
AGGTGTATGCCTGGAGTGGAGCGCATCGCGGTGACGAAGACGGATTCCGA
GACCTTGTATGTGTGGGACACGGGTGCTCTGGGAGGGCTGGAGCGGGACA
AGCCCCTCCCCAAGGTGGTGCCTTGCAGTCGTCCGACTCTGGGTTTGATC
GGCCACAGCTCCGACGCCATGTACGCGCTGGCTCTTTGTCCTCGCGACCA
CCGGGTGTTGTCTGGGGCTGGCGACGGGTCGATTTTGATGTGGTCCCTGG
ACCACGCCTCGATCGCCTCCCTCTCCTCCCCGACCCCTTCCACCCCGACC
CCTCTCTCCTCCACACGACCCTCCGTGCTTGGAGGACACCGAAGGAGCAT
TGGAGCGCCTCGCTTGGAGCCGTTTGCCAGGTTCAAGGGCCACGTCAAGG
CCGTGGAAGATGTGGTGTTCATGCCCGTGACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99489:246..677+

>mRNA_M-pyrifera_M_contig99489.22888.1 ID=mRNA_M-pyrifera_M_contig99489.22888.1|Name=mRNA_M-pyrifera_M_contig99489.22888.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig99489:246..677+ (Macrocystis pyrifera P11B4 male)
ATGCCTGGAGTGGAGCGCATCGCGGTGACGAAGACGGATTCCGAGACCTT
GTATGTGTGGGACACGGGTGCTCTGGGAGGGCTGGAGCGGGACAAGCCCC
TCCCCAAGGTGGTGCCTTGCAGTCGTCCGACTCTGGGTTTGATCGGCCAC
AGCTCCGACGCCATGTACGCGCTGGCTCTTTGTCCTCGCGACCACCGGGT
GTTGTCTGGGGCTGGCGACGGGTCGATTTTGATGTGGTCCCTGGACCACG
CCTCGATCGCCTCCCTCTCCTCCCCGACCCCTTCCACCCCGACCCCTCTC
TCCTCCACACGACCCTCCGTGCTTGGAGGACACCGAAGGAGCATTGGAGC
GCCTCGCTTGGAGCCGTTTGCCAGGTTCAAGGGCCACGTCAAGGCCGTGG
AAGATGTGGTGTTCATGCCCGTGACTATGCCTGGAGTGGAGCGCATCGCG
GTGACGAAGACGGATTCCGAGACCTTGTATGTGTGGGACACGGGTGCTCT
GGGAGGGCTGGAGCGGGACAAGCCCCTCCCCAAGGTGGTGCCTTGCAGTC
GTCCGACTCTGGGTTTGATCGGCCACAGCTCCGACGCCATGTACGCGCTG
GCTCTTTGTCCTCGCGACCACCGGGTGTTGTCTGGGGCTGGCGACGGGTC
GATTTTGATGTGGTCCCTGGACCACGCCTCGATCGCCTCCCTCTCCTCCC
CGACCCCTTCCACCCCGACCCCTCTCTCCTCCACACGACCCTCCGTGCTT
GGAGGACACCGAAGGAGCATTGGAGCGCCTCGCTTGGAGCCGTTTGCCAG
GTTCAAGGGCCACGTCAAGGCCGTGGAAGATGTGGTGTTCATGCCCGTGA
CT
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