prot_M-pyrifera_M_contig9803.22574.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig9803.22574.1
Unique Nameprot_M-pyrifera_M_contig9803.22574.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length220
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9803.22574.1 vs. uniprot
Match: D8LTM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.430e-10
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0 
Query:    1 FSNGFHNSGDLQ--ITTKVDQSIVAMVVSLLMTIVTAGLAFAKARGRLREMPIFAVEVLNNAVNLTAIFYAVHALVPSKHLPKRRLP 85
            FS G   +G  +  +   V Q+I++  +SL+MTI  AG+A AKA+G L   P+FAVEVL+N VNL AIFYAVH    S   P RRLP
Sbjct:  197 FSGGLKATGSCRKCLNISVWQTIISEGLSLVMTITVAGIALAKAKGGLGNTPVFAVEVLDNIVNLAAIFYAVHRRYSSG--PIRRLP 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9803.22574.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTM0_ECTSI2.430e-1050.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..220
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 41..51
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 20..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9803contigM-pyrifera_M_contig9803:206..1241 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9803.22574.1mRNA_M-pyrifera_M_contig9803.22574.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig9803 206..1241 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig9803.22574.1 ID=prot_M-pyrifera_M_contig9803.22574.1|Name=mRNA_M-pyrifera_M_contig9803.22574.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
FSNGFHNSGDLQITTKVDQSIVAMVVSLLMTIVTAGLAFAKARGRLREMP
IFAVEVLNNAVNLTAIFYAVHALVPSKHLPKRRLPLKNSQRLDLASANKR
YRSMAAVGSGGGGGGGGSNSRTRSGRVGSRMRGFGVGGGSAGCPGHGHGA
NGGSDSGSGSGRSFRYPHGPEATSSGLPSPLQRHTGPIKRLPPVLDMSPE
IRSPSSGNFSENFSLGTSSP
back to top