mRNA_M-pyrifera_M_contig9803.22574.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9803.22574.1
Unique NamemRNA_M-pyrifera_M_contig9803.22574.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9803.22574.1 vs. uniprot
Match: D8LTM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.430e-10
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 FSNGFHNSGDLQ--ITTKVDQSIVAMVVSLLMTIVTAGLAFAKARGRLREMPIFAVEVLNNAVNLTAIFYAVHALVPSKHLPKRRLP 255
            FS G   +G  +  +   V Q+I++  +SL+MTI  AG+A AKA+G L   P+FAVEVL+N VNL AIFYAVH    S   P RRLP
Sbjct:  197 FSGGLKATGSCRKCLNISVWQTIISEGLSLVMTITVAGIALAKAKGGLGNTPVFAVEVLDNIVNLAAIFYAVHRRYSSG--PIRRLP 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9803.22574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTM0_ECTSI2.430e-1050.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9803contigM-pyrifera_M_contig9803:206..1241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003600.3
Exons2
Model size660
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.650048-CDS-M-pyrifera_M_contig9803:205..3551622816897.650048-CDS-M-pyrifera_M_contig9803:205..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9803 206..355 +
1692278243.131-CDS-M-pyrifera_M_contig9803:205..3551692278243.131-CDS-M-pyrifera_M_contig9803:205..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9803 206..355 +
1622816897.6657126-CDS-M-pyrifera_M_contig9803:731..12411622816897.6657126-CDS-M-pyrifera_M_contig9803:731..1241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9803 732..1241 +
1692278243.1432617-CDS-M-pyrifera_M_contig9803:731..12411692278243.1432617-CDS-M-pyrifera_M_contig9803:731..1241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9803 732..1241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9803.22574.1prot_M-pyrifera_M_contig9803.22574.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9803 206..1241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9803.22574.1

>prot_M-pyrifera_M_contig9803.22574.1 ID=prot_M-pyrifera_M_contig9803.22574.1|Name=mRNA_M-pyrifera_M_contig9803.22574.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
FSNGFHNSGDLQITTKVDQSIVAMVVSLLMTIVTAGLAFAKARGRLREMP
IFAVEVLNNAVNLTAIFYAVHALVPSKHLPKRRLPLKNSQRLDLASANKR
YRSMAAVGSGGGGGGGGSNSRTRSGRVGSRMRGFGVGGGSAGCPGHGHGA
NGGSDSGSGSGRSFRYPHGPEATSSGLPSPLQRHTGPIKRLPPVLDMSPE
IRSPSSGNFSENFSLGTSSP
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mRNA from alignment at M-pyrifera_M_contig9803:206..1241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9803.22574.1 ID=mRNA_M-pyrifera_M_contig9803.22574.1|Name=mRNA_M-pyrifera_M_contig9803.22574.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1036bp|location=Sequence derived from alignment at M-pyrifera_M_contig9803:206..1241+ (Macrocystis pyrifera P11B4 male)
TTTTCTAACGGATTCCACAACTCGGGCGACCTACAGATCACGACTAAAGT
GGACCAAAGTATAGTCGCCATGGTGGTCTCCTTGCTGATGACAATCGTTA
CTGCGGGACTTGCGTTCGCCAAAGCTCGGGGGCGTCTTCGTGAAATGCCG
GTGAGTTGTTGCGGCGGGCGGGACGGGGGGGGGGGGTGTACTAATGCTCA
TGAGGGGGTCAATTTATGTCATGCGTGGACGTAGTCGTGTGGCCATAGAC
TCTCGCATCTCAACAATGCCGGAACGGAGCACGTCGGGTTTTCACCGACC
AGGTAGATGTTGCGGAGTGTGTGGGGGGCGAACTCATGTCATGCATGGCC
GTACTATATTACCATAGAACAGCAACACGTACGGAGTGTATACACCGTCG
CACCCCATATACCCCCCCCCTCACTTTCCCCGCACTCCCTACCCGCCTCA
TTTACCCGCCCGCCCCCGCCCCCCTCCCCCCCCCGCCGACCTACACTACG
ACACACATGAACAAATAAAAATTTAGATTTTCGCCGTGGAGGTGCTGAAT
AACGCGGTCAATCTCACGGCCATTTTCTACGCCGTTCACGCGCTCGTGCC
GAGCAAGCACCTCCCGAAGCGTCGCCTCCCCCTGAAGAACTCGCAGAGGC
TAGACCTAGCGTCCGCCAACAAGCGGTACCGCTCCATGGCCGCGGTCGGC
AGCGGCGGCGGTGGTGGCGGCGGCGGCAGCAACAGCAGAACCAGAAGCGG
GCGCGTCGGGTCCCGTATGCGTGGGTTCGGCGTCGGCGGCGGTAGCGCAG
GTTGCCCCGGTCACGGCCATGGCGCTAACGGCGGCAGCGATAGCGGTAGC
GGCTCCGGGAGGTCCTTCCGCTACCCCCACGGGCCAGAAGCAACATCGTC
CGGACTTCCTTCGCCGCTGCAACGTCACACCGGTCCCATCAAAAGGCTGC
CGCCGGTATTGGACATGTCTCCGGAGATTAGGTCACCCAGTTCCGGAAAT
TTCTCGGAGAATTTCTCGCTCGGCACCAGCTCTCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9803:206..1241+

>mRNA_M-pyrifera_M_contig9803.22574.1 ID=mRNA_M-pyrifera_M_contig9803.22574.1|Name=mRNA_M-pyrifera_M_contig9803.22574.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig9803:206..1241+ (Macrocystis pyrifera P11B4 male)
TTTTCTAACGGATTCCACAACTCGGGCGACCTACAGATCACGACTAAAGT
GGACCAAAGTATAGTCGCCATGGTGGTCTCCTTGCTGATGACAATCGTTA
CTGCGGGACTTGCGTTCGCCAAAGCTCGGGGGCGTCTTCGTGAAATGCCG
TTTTCTAACGGATTCCACAACTCGGGCGACCTACAGATCACGACTAAAGT
GGACCAAAGTATAGTCGCCATGGTGGTCTCCTTGCTGATGACAATCGTTA
CTGCGGGACTTGCGTTCGCCAAAGCTCGGGGGCGTCTTCGTGAAATGCCG
ATTTTCGCCGTGGAGGTGCTGAATAACGCGGTCAATCTCACGGCCATTTT
CTACGCCGTTCACGCGCTCGTGCCGAGCAAGCACCTCCCGAAGCGTCGCC
TCCCCCTGAAGAACTCGCAGAGGCTAGACCTAGCGTCCGCCAACAAGCGG
TACCGCTCCATGGCCGCGGTCGGCAGCGGCGGCGGTGGTGGCGGCGGCGG
CAGCAACAGCAGAACCAGAAGCGGGCGCGTCGGGTCCCGTATGCGTGGGT
TCGGCGTCGGCGGCGGTAGCGCAGGTTGCCCCGGTCACGGCCATGGCGCT
AACGGCGGCAGCGATAGCGGTAGCGGCTCCGGGAGGTCCTTCCGCTACCC
CCACGGGCCAGAAGCAACATCGTCCGGACTTCCTTCGCCGCTGCAACGTC
ACACCGGTCCCATCAAAAGGCTGCCGCCGGTATTGGACATGTCTCCGGAG
ATTAGGTCACCCAGTTCCGGAAATTTCTCGGAGAATTTCTCGCTCGGCAC
CAGCTCTCCCATTTTCGCCGTGGAGGTGCTGAATAACGCGGTCAATCTCA
CGGCCATTTTCTACGCCGTTCACGCGCTCGTGCCGAGCAAGCACCTCCCG
AAGCGTCGCCTCCCCCTGAAGAACTCGCAGAGGCTAGACCTAGCGTCCGC
CAACAAGCGGTACCGCTCCATGGCCGCGGTCGGCAGCGGCGGCGGTGGTG
GCGGCGGCGGCAGCAACAGCAGAACCAGAAGCGGGCGCGTCGGGTCCCGT
ATGCGTGGGTTCGGCGTCGGCGGCGGTAGCGCAGGTTGCCCCGGTCACGG
CCATGGCGCTAACGGCGGCAGCGATAGCGGTAGCGGCTCCGGGAGGTCCT
TCCGCTACCCCCACGGGCCAGAAGCAACATCGTCCGGACTTCCTTCGCCG
CTGCAACGTCACACCGGTCCCATCAAAAGGCTGCCGCCGGTATTGGACAT
GTCTCCGGAGATTAGGTCACCCAGTTCCGGAAATTTCTCGGAGAATTTCT
CGCTCGGCACCAGCTCTCCC
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