prot_M-pyrifera_M_contig96134.22162.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig96134.22162.1
Unique Nameprot_M-pyrifera_M_contig96134.22162.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length131
Homology
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BLAST of mRNA_M-pyrifera_M_contig96134.22162.1 vs. uniprot
Match: A0A5A8CRN5_CAFRO (HMG box domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRN5_CAFRO)

HSP 1 Score: 80.9 bits (198), Expect = 3.460e-15
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 0 
Query:    1 DNLVSPWELQLGSRFSTPSLTHMHSLPPPHLSHPSSIVAYLRRTECGFPFREPVPKSEYAYHRLISNPISLRTIAQRAAEGRYTPTPPTSDPVALWNDLRLLISNAKKANQKERWEWRAADALEKEVRRLR 131
            DNL SPW+L+  S F  PS     +   P L     ++AY+ +TE    FRE                + LR + ++  +G Y  +   S    LW D RL+ISNAK+ N++  WEWRAAD LE E+R ++
Sbjct:  495 DNLASPWDLRTSSNFVHPSNVAAFAYDVPELGDAEQVLAYIGKTEPAAAFRERGSGGASG-----DAAVWLRAMERKCKQGHYAGSAGLS---RLWEDFRLMISNAKRDNEEAYWEWRAADMLEAELRAVK 617
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BLAST of mRNA_M-pyrifera_M_contig96134.22162.1 vs. uniprot
Match: A0A196SFG8_BLAHN (Bromo domain-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFG8_BLAHN)

HSP 1 Score: 69.3 bits (168), Expect = 3.610e-11
Identity = 47/136 (34.56%), Postives = 67/136 (49.26%), Query Frame = 0 
Query:    1 DNLVSPWELQLGSRFSTPSLTHMHSLPPPHLSHPSSIVAYLRRTECG------FPFREPVPKSEYAYHRLISNPISLRTIAQRAAEGRYTPTPPTSDPVALWNDLRLLISNAKKANQKERWEWRAADALEKEVRRL 130
            DN  SPWEL+  S+ + PS      +  P    P +I+A LR  + G      F     + K E  Y   I++P+    I ++   G Y         V  W+DL L+  NAK+ NQKER+EWR AD LE+ + R+
Sbjct:  367 DNDASPWELRR-SKIAEPSSEREQVVRAPLNPEPETILALLRDAKLGVEGVNVFEDSSELLKME-TYRSSITHPMDFHIIEEKLKHGEYG----KEKSVIFWSDLALIAVNAKQFNQKERFEWRIADNLERTLHRI 496
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96134.22162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8CRN5_CAFRO3.460e-1535.88HMG box domain-containing protein n=3 Tax=Cafeteri... [more]
A0A196SFG8_BLAHN3.610e-1134.56Bromo domain-containing protein n=1 Tax=Blastocyst... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainSMARTSM00297bromo_6coord: 23..129
e-value: 1.0E-4
score: 31.7
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 37..118
e-value: 1.1E-12
score: 47.8
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 42..117
score: 9.628
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 30..131
e-value: 3.9E-17
score: 63.9
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 25..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96134contigM-pyrifera_M_contig96134:327..719 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96134.22162.1mRNA_M-pyrifera_M_contig96134.22162.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig96134 327..719 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig96134.22162.1 ID=prot_M-pyrifera_M_contig96134.22162.1|Name=mRNA_M-pyrifera_M_contig96134.22162.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
DNLVSPWELQLGSRFSTPSLTHMHSLPPPHLSHPSSIVAYLRRTECGFPF
REPVPKSEYAYHRLISNPISLRTIAQRAAEGRYTPTPPTSDPVALWNDLR
LLISNAKKANQKERWEWRAADALEKEVRRLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf