mRNA_M-pyrifera_M_contig96134.22162.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96134.22162.1
Unique NamemRNA_M-pyrifera_M_contig96134.22162.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig96134.22162.1 vs. uniprot
Match: A0A5A8CRN5_CAFRO (HMG box domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRN5_CAFRO)

HSP 1 Score: 80.9 bits (198), Expect = 3.460e-15
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:    1 DNLVSPWELQLGSRFSTPSLTHMHSLPPPHLSHPSSIVAYLRRTECGFPFREPVPKSEYAYHRLISNPISLRTIAQRAAEGRYTPTPPTSDPVALWNDLRLLISNAKKANQKERWEWRAADALEKEVRRLR 393
            DNL SPW+L+  S F  PS     +   P L     ++AY+ +TE    FRE                + LR + ++  +G Y  +   S    LW D RL+ISNAK+ N++  WEWRAAD LE E+R ++
Sbjct:  495 DNLASPWDLRTSSNFVHPSNVAAFAYDVPELGDAEQVLAYIGKTEPAAAFRERGSGGASG-----DAAVWLRAMERKCKQGHYAGSAGLS---RLWEDFRLMISNAKRDNEEAYWEWRAADMLEAELRAVK 617
[Close]
BLAST of mRNA_M-pyrifera_M_contig96134.22162.1 vs. uniprot
Match: A0A196SFG8_BLAHN (Bromo domain-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFG8_BLAHN)

HSP 1 Score: 69.3 bits (168), Expect = 3.610e-11
Identity = 47/136 (34.56%), Postives = 67/136 (49.26%), Query Frame = 1 
Query:    1 DNLVSPWELQLGSRFSTPSLTHMHSLPPPHLSHPSSIVAYLRRTECG------FPFREPVPKSEYAYHRLISNPISLRTIAQRAAEGRYTPTPPTSDPVALWNDLRLLISNAKKANQKERWEWRAADALEKEVRRL 390
            DN  SPWEL+  S+ + PS      +  P    P +I+A LR  + G      F     + K E  Y   I++P+    I ++   G Y         V  W+DL L+  NAK+ NQKER+EWR AD LE+ + R+
Sbjct:  367 DNDASPWELRR-SKIAEPSSEREQVVRAPLNPEPETILALLRDAKLGVEGVNVFEDSSELLKME-TYRSSITHPMDFHIIEEKLKHGEYG----KEKSVIFWSDLALIAVNAKQFNQKERFEWRIADNLERTLHRI 496
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96134.22162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8CRN5_CAFRO3.460e-1535.88HMG box domain-containing protein n=3 Tax=Cafeteri... [more]
A0A196SFG8_BLAHN3.610e-1134.56Bromo domain-containing protein n=1 Tax=Blastocyst... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96134contigM-pyrifera_M_contig96134:327..719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.8059916-CDS-M-pyrifera_M_contig96134:326..7191622816876.8059916-CDS-M-pyrifera_M_contig96134:326..719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96134 327..719 -
1692278231.1172814-CDS-M-pyrifera_M_contig96134:326..7191692278231.1172814-CDS-M-pyrifera_M_contig96134:326..719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96134 327..719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96134.22162.1prot_M-pyrifera_M_contig96134.22162.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96134 327..719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96134.22162.1

>prot_M-pyrifera_M_contig96134.22162.1 ID=prot_M-pyrifera_M_contig96134.22162.1|Name=mRNA_M-pyrifera_M_contig96134.22162.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
DNLVSPWELQLGSRFSTPSLTHMHSLPPPHLSHPSSIVAYLRRTECGFPF
REPVPKSEYAYHRLISNPISLRTIAQRAAEGRYTPTPPTSDPVALWNDLR
LLISNAKKANQKERWEWRAADALEKEVRRLR
back to top

mRNA from alignment at M-pyrifera_M_contig96134:327..719-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96134.22162.1 ID=mRNA_M-pyrifera_M_contig96134.22162.1|Name=mRNA_M-pyrifera_M_contig96134.22162.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig96134:327..719- (Macrocystis pyrifera P11B4 male)
GACAACCTTGTGAGTCCTTGGGAATTGCAGTTGGGCTCACGTTTCTCCAC
TCCAAGCCTCACCCACATGCATTCCCTACCCCCACCCCATCTCTCACATC
CTTCATCTATCGTGGCGTACCTCCGACGTACAGAATGTGGTTTTCCCTTT
CGTGAACCTGTGCCAAAGTCAGAGTACGCCTACCATCGCCTCATTTCCAA
TCCAATCTCATTGCGTACCATTGCACAACGAGCAGCAGAAGGCCGATACA
CCCCTACACCCCCCACTTCTGATCCTGTTGCCTTGTGGAATGACCTTCGT
CTGCTGATTTCCAACGCAAAGAAAGCCAATCAAAAGGAGCGCTGGGAATG
GCGTGCAGCAGATGCCCTTGAAAAAGAAGTGCGTCGCCTCCGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig96134:327..719-

>mRNA_M-pyrifera_M_contig96134.22162.1 ID=mRNA_M-pyrifera_M_contig96134.22162.1|Name=mRNA_M-pyrifera_M_contig96134.22162.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig96134:327..719- (Macrocystis pyrifera P11B4 male)
GACAACCTTGTGAGTCCTTGGGAATTGCAGTTGGGCTCACGTTTCTCCAC
TCCAAGCCTCACCCACATGCATTCCCTACCCCCACCCCATCTCTCACATC
CTTCATCTATCGTGGCGTACCTCCGACGTACAGAATGTGGTTTTCCCTTT
CGTGAACCTGTGCCAAAGTCAGAGTACGCCTACCATCGCCTCATTTCCAA
TCCAATCTCATTGCGTACCATTGCACAACGAGCAGCAGAAGGCCGATACA
CCCCTACACCCCCCACTTCTGATCCTGTTGCCTTGTGGAATGACCTTCGT
CTGCTGATTTCCAACGCAAAGAAAGCCAATCAAAAGGAGCGCTGGGAATG
GCGTGCAGCAGATGCCCTTGAAAAAGAAGTGCGTCGCCTCCGTGACAACC
TTGTGAGTCCTTGGGAATTGCAGTTGGGCTCACGTTTCTCCACTCCAAGC
CTCACCCACATGCATTCCCTACCCCCACCCCATCTCTCACATCCTTCATC
TATCGTGGCGTACCTCCGACGTACAGAATGTGGTTTTCCCTTTCGTGAAC
CTGTGCCAAAGTCAGAGTACGCCTACCATCGCCTCATTTCCAATCCAATC
TCATTGCGTACCATTGCACAACGAGCAGCAGAAGGCCGATACACCCCTAC
ACCCCCCACTTCTGATCCTGTTGCCTTGTGGAATGACCTTCGTCTGCTGA
TTTCCAACGCAAAGAAAGCCAATCAAAAGGAGCGCTGGGAATGGCGTGCA
GCAGATGCCCTTGAAAAAGAAGTGCGTCGCCTCCGT
back to top