prot_M-pyrifera_M_contig88414.20535.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig88414.20535.1
Unique Nameprot_M-pyrifera_M_contig88414.20535.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length254
Homology
BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: A0A7V3UYT4_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3UYT4_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 5.180e-9
Identity = 67/275 (24.36%), Postives = 123/275 (44.73%), Query Frame = 0
Query:    5 FVFGKGDLNASSSQPEAMDVLQFQAWVGNWAPVRAIEPQNDTLLFAAPMLEPVGQFEEYGGKRYVVENVREALVGGGGEFYSDDAQKRVIWAVE-----EDSKGVVPVLDTVVGFRG-------VQGLSMQGLSVAHAS--DG--GDLRYSAYFSPTSAISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQ------AAAPDAT--HLLISDTIVNDTAKIFLNQPAGIRV--KGAEDIRIQHNQVAFSPYGGILVGW 253
            F+F +G + +       +DVL F  W  +   ++ ++    T+ F  P +  V   +   G+R++VENVREAL   G E+Y D     + +        E ++ + P L+ +V  +G       V+ +  +GL+ AHA+  +G  G +   A      AIS   +         V +VG   + + +   H  + +C + D G  G++      A+ P+A   H ++ +  +    ++    PAGI +    + D  I+HN +    Y G+ +GW
Sbjct:   48 FIFKEGQIRSDWHNLGDVDVLVFHMWTMSRLRIKTVDDATRTVTFTGPTVAAVWYADLAKGRRFIVENVREALERPG-EWYLDSHTGVLTYLPMPGEDMETAEVMAPRLERLVQIKGDGALGQWVEHIVFRGLTFAHANWVEGPKGYVFAQAESILPGAISATGAWGCVFEDCAVCHVGTYAVELGAGCKHCRLENCDLWDLGAGGVKIGEMGIASDPNAVADHNVVRNCTIAHGGRLH---PAGIGIWIGQSPDNLIEHNDIFDFYYSGMSIGW 318          
BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: A0A1H6DED8_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces yanglinensis TaxID=310779 RepID=A0A1H6DED8_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 1.590e-5
Identity = 35/116 (30.17%), Postives = 53/116 (45.69%), Query Frame = 0
Query:  147 AISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQAAAPDATH-----LLISDTIVNDTAKIFLNQP----AGIRVKGAEDIRIQHNQVAFSPYGGILVGW 253
            A+ +   + ++ SG TV+  G SGIA+   T    ++   V DT G G+     D  +     L+ S   V+ +   F  Q      GI V  A    + HN V ++PY GI +GW
Sbjct:  474 AVQVHRGARITFSGDTVQQTGTSGIALADQTQDSTVSGATVTDTSGTGVSVGEVDDYYQTDPALMTSGNTVSGSVVRFPGQEYQDAVGIWVGHARGTLLSHNDVGYTPYSGISLGW 589          
BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: A0A177MFR4_METMH (Uncharacterized protein n=3 Tax=Methylomonas TaxID=416 RepID=A0A177MFR4_METMH)

HSP 1 Score: 56.2 bits (134), Expect = 2.010e-5
Identity = 53/231 (22.94%), Postives = 106/231 (45.89%), Query Frame = 0
Query:   30 WVGNWAPVRAIEPQNDTLLFAAPMLEPVGQFEEYGGKRYVVENVREALVGGGGEFYSDDAQKRVIWAVEED---SKGVVPVLDTVVGFRGVQGLSMQGLSVAHASDGGDLRYSAYFSPTSAISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGI------QAAAPDATHLLISDTIVNDTAKIFLNQPAGIRVKGAEDIRIQHNQVAFSPYGGILV 251
            W   + PV AI+  ++ +  +A    P+       G+R+ ++N+   L    GE++ D  + R+++   +       +V  L  +V  +  + +S   L   H+++             +AISI NSS ++L+ + V NVG   I  + +++++ I +  + +TG  GI      +     + +L I++ I +    I    PA IR+ G      +HN V ++   GI++
Sbjct:  194 WYDQYLPVLAIDQNSNQITLSAETTFPLAS-----GRRFYLQNILSEL-NSSGEWFYDKPKARILFIPPDKVIPENIIVSSLQKLVSLKAAKNISFHNLIFRHSTE-------------TAISISNSSDITLNKLEVNNVGARAIEAV-DSNNIIIANSQIYETGEGGILLTGGNRNTLQSSNNLAINNHIHHFGTTILTYSPA-IRLGGVGG-SAKHNMVEYAAGTGIIL 402          
BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: A0A1C4KDG2_9ACTN (Right handed beta helix region n=1 Tax=Streptomyces sp. DvalAA-14 TaxID=1839759 RepID=A0A1C4KDG2_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 2.140e-5
Identity = 33/116 (28.45%), Postives = 54/116 (46.55%), Query Frame = 0
Query:  147 AISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQAAAPDATH-----LLISDTIVNDTAKIFLNQP----AGIRVKGAEDIRIQHNQVAFSPYGGILVGW 253
            A+ +   + ++ SG TV++ G SG+ +   T    +T   V DT G G+     D  +     L+ S   V+D+   F  Q      GI V  +    + HN + ++PY GI +GW
Sbjct:  474 AVQVHRGARITFSGDTVQHTGTSGVDLADQTQDSTVTASSVTDTSGIGVAIGEADDYYQTEPALMTSGNTVSDSTVQFPGQEYQDAVGIWVGHSRGTTLSHNDIGYTPYSGISIGW 589          
BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: UPI001BA56818 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Kutzneria sp. CA-103260 TaxID=2802641 RepID=UPI001BA56818)

HSP 1 Score: 55.1 bits (131), Expect = 5.150e-5
Identity = 33/117 (28.21%), Postives = 51/117 (43.59%), Query Frame = 0
Query:  147 AISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQAAAPDATHLL----------ISDTIVNDTAKIFLNQPAGIRVKGAEDIRIQHNQVAFSPYGGILVGW 253
            A+ +     ++ S  TVRNVG SGI +   T    +    V DT G G+     D  +            +SD  +    + F +   GI V  + +  + HN V ++PY GI +GW
Sbjct:  465 AVQVHRGQRITFSDDTVRNVGTSGIELADQTQDSTVYRSTVTDTSGIGVAVGEVDDYYQTQPALQTSGNSVSDNTIQRVGQEFADA-VGILVGHSRNTTLSHNDVGYTPYSGISIGW 580          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7V3UYT4_9BACT5.180e-924.36Right-handed parallel beta-helix repeat-containing... [more]
A0A1H6DED8_9ACTN1.590e-530.17Uncharacterized protein n=1 Tax=Streptomyces yangl... [more]
A0A177MFR4_METMH2.010e-522.94Uncharacterized protein n=3 Tax=Methylomonas TaxID... [more]
A0A1C4KDG2_9ACTN2.140e-528.45Right handed beta helix region n=1 Tax=Streptomyce... [more]
UPI001BA568185.150e-528.21right-handed parallel beta-helix repeat-containing... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 177..199
e-value: 430.0
score: 9.7
coord: 202..230
e-value: 1800.0
score: 5.3
coord: 231..252
e-value: 2200.0
score: 4.8
coord: 153..175
e-value: 35.0
score: 13.3
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 143..250
e-value: 2.0E-9
score: 37.5
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 77..254
e-value: 3.7E-14
score: 54.5
NoneNo IPR availablePANTHERPTHR36453FAMILY NOT NAMEDcoord: 12..253
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 143..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88414contigM-pyrifera_M_contig88414:59..820 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88414.20535.1mRNA_M-pyrifera_M_contig88414.20535.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig88414 59..820 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig88414.20535.1 ID=prot_M-pyrifera_M_contig88414.20535.1|Name=mRNA_M-pyrifera_M_contig88414.20535.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
NNWGFVFGKGDLNASSSQPEAMDVLQFQAWVGNWAPVRAIEPQNDTLLFA
APMLEPVGQFEEYGGKRYVVENVREALVGGGGEFYSDDAQKRVIWAVEED
SKGVVPVLDTVVGFRGVQGLSMQGLSVAHASDGGDLRYSAYFSPTSAISI
QNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQAAAP
DATHLLISDTIVNDTAKIFLNQPAGIRVKGAEDIRIQHNQVAFSPYGGIL
VGWQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR039448Beta_helix
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence