mRNA_M-pyrifera_M_contig88414.20535.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88414.20535.1
Unique NamemRNA_M-pyrifera_M_contig88414.20535.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: A0A7V3UYT4_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3UYT4_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 5.180e-9
Identity = 67/275 (24.36%), Postives = 123/275 (44.73%), Query Frame = 1 
Query:   13 FVFGKGDLNASSSQPEAMDVLQFQAWVGNWAPVRAIEPQNDTLLFAAPMLEPVGQFEEYGGKRYVVENVREALVGGGGEFYSDDAQKRVIWAVE-----EDSKGVVPVLDTVVGFRG-------VQGLSMQGLSVAHAS--DG--GDLRYSAYFSPTSAISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQ------AAAPDAT--HLLISDTIVNDTAKIFLNQPAGIRV--KGAEDIRIQHNQVAFSPYGGILVGW 759
            F+F +G + +       +DVL F  W  +   ++ ++    T+ F  P +  V   +   G+R++VENVREAL   G E+Y D     + +        E ++ + P L+ +V  +G       V+ +  +GL+ AHA+  +G  G +   A      AIS   +         V +VG   + + +   H  + +C + D G  G++      A+ P+A   H ++ +  +    ++    PAGI +    + D  I+HN +    Y G+ +GW
Sbjct:   48 FIFKEGQIRSDWHNLGDVDVLVFHMWTMSRLRIKTVDDATRTVTFTGPTVAAVWYADLAKGRRFIVENVREALERPG-EWYLDSHTGVLTYLPMPGEDMETAEVMAPRLERLVQIKGDGALGQWVEHIVFRGLTFAHANWVEGPKGYVFAQAESILPGAISATGAWGCVFEDCAVCHVGTYAVELGAGCKHCRLENCDLWDLGAGGVKIGEMGIASDPNAVADHNVVRNCTIAHGGRLH---PAGIGIWIGQSPDNLIEHNDIFDFYYSGMSIGW 318
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BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: A0A1H6DED8_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces yanglinensis TaxID=310779 RepID=A0A1H6DED8_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 1.590e-5
Identity = 35/116 (30.17%), Postives = 53/116 (45.69%), Query Frame = 1 
Query:  439 AISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQAAAPDATH-----LLISDTIVNDTAKIFLNQP----AGIRVKGAEDIRIQHNQVAFSPYGGILVGW 759
            A+ +   + ++ SG TV+  G SGIA+   T    ++   V DT G G+     D  +     L+ S   V+ +   F  Q      GI V  A    + HN V ++PY GI +GW
Sbjct:  474 AVQVHRGARITFSGDTVQQTGTSGIALADQTQDSTVSGATVTDTSGTGVSVGEVDDYYQTDPALMTSGNTVSGSVVRFPGQEYQDAVGIWVGHARGTLLSHNDVGYTPYSGISLGW 589
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BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: A0A177MFR4_METMH (Uncharacterized protein n=3 Tax=Methylomonas TaxID=416 RepID=A0A177MFR4_METMH)

HSP 1 Score: 56.2 bits (134), Expect = 2.010e-5
Identity = 53/231 (22.94%), Postives = 106/231 (45.89%), Query Frame = 1 
Query:   88 WVGNWAPVRAIEPQNDTLLFAAPMLEPVGQFEEYGGKRYVVENVREALVGGGGEFYSDDAQKRVIWAVEED---SKGVVPVLDTVVGFRGVQGLSMQGLSVAHASDGGDLRYSAYFSPTSAISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGI------QAAAPDATHLLISDTIVNDTAKIFLNQPAGIRVKGAEDIRIQHNQVAFSPYGGILV 753
            W   + PV AI+  ++ +  +A    P+       G+R+ ++N+   L    GE++ D  + R+++   +       +V  L  +V  +  + +S   L   H+++             +AISI NSS ++L+ + V NVG   I  + +++++ I +  + +TG  GI      +     + +L I++ I +    I    PA IR+ G      +HN V ++   GI++
Sbjct:  194 WYDQYLPVLAIDQNSNQITLSAETTFPLAS-----GRRFYLQNILSEL-NSSGEWFYDKPKARILFIPPDKVIPENIIVSSLQKLVSLKAAKNISFHNLIFRHSTE-------------TAISISNSSDITLNKLEVNNVGARAIEAV-DSNNIIIANSQIYETGEGGILLTGGNRNTLQSSNNLAINNHIHHFGTTILTYSPA-IRLGGVGG-SAKHNMVEYAAGTGIIL 402
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BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: A0A1C4KDG2_9ACTN (Right handed beta helix region n=1 Tax=Streptomyces sp. DvalAA-14 TaxID=1839759 RepID=A0A1C4KDG2_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 2.140e-5
Identity = 33/116 (28.45%), Postives = 54/116 (46.55%), Query Frame = 1 
Query:  439 AISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQAAAPDATH-----LLISDTIVNDTAKIFLNQP----AGIRVKGAEDIRIQHNQVAFSPYGGILVGW 759
            A+ +   + ++ SG TV++ G SG+ +   T    +T   V DT G G+     D  +     L+ S   V+D+   F  Q      GI V  +    + HN + ++PY GI +GW
Sbjct:  474 AVQVHRGARITFSGDTVQHTGTSGVDLADQTQDSTVTASSVTDTSGIGVAIGEADDYYQTEPALMTSGNTVSDSTVQFPGQEYQDAVGIWVGHSRGTTLSHNDIGYTPYSGISIGW 589
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BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Match: UPI001BA56818 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Kutzneria sp. CA-103260 TaxID=2802641 RepID=UPI001BA56818)

HSP 1 Score: 55.1 bits (131), Expect = 5.150e-5
Identity = 33/117 (28.21%), Postives = 51/117 (43.59%), Query Frame = 1 
Query:  439 AISIQNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQAAAPDATHLL----------ISDTIVNDTAKIFLNQPAGIRVKGAEDIRIQHNQVAFSPYGGILVGW 759
            A+ +     ++ S  TVRNVG SGI +   T    +    V DT G G+     D  +            +SD  +    + F +   GI V  + +  + HN V ++PY GI +GW
Sbjct:  465 AVQVHRGQRITFSDDTVRNVGTSGIELADQTQDSTVYRSTVTDTSGIGVAVGEVDDYYQTQPALQTSGNSVSDNTIQRVGQEFADA-VGILVGHSRNTTLSHNDVGYTPYSGISIGW 580
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88414.20535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7V3UYT4_9BACT5.180e-924.36Right-handed parallel beta-helix repeat-containing... [more]
A0A1H6DED8_9ACTN1.590e-530.17Uncharacterized protein n=1 Tax=Streptomyces yangl... [more]
A0A177MFR4_METMH2.010e-522.94Uncharacterized protein n=3 Tax=Methylomonas TaxID... [more]
A0A1C4KDG2_9ACTN2.140e-528.45Right handed beta helix region n=1 Tax=Streptomyce... [more]
UPI001BA568185.150e-528.21right-handed parallel beta-helix repeat-containing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88414contigM-pyrifera_M_contig88414:59..820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score91.7
Seed ortholog evalue5.4e-16
Seed eggNOG ortholog7719.XP_002119256.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3KA@1,2SAMW@2759,3ABWA@33154,3BWCA@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size762
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.2173173-CDS-M-pyrifera_M_contig88414:58..8201622816794.2173173-CDS-M-pyrifera_M_contig88414:58..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88414 59..820 -
1692278182.36875-CDS-M-pyrifera_M_contig88414:58..8201692278182.36875-CDS-M-pyrifera_M_contig88414:58..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88414 59..820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88414.20535.1prot_M-pyrifera_M_contig88414.20535.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88414 59..820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88414.20535.1

>prot_M-pyrifera_M_contig88414.20535.1 ID=prot_M-pyrifera_M_contig88414.20535.1|Name=mRNA_M-pyrifera_M_contig88414.20535.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
NNWGFVFGKGDLNASSSQPEAMDVLQFQAWVGNWAPVRAIEPQNDTLLFA
APMLEPVGQFEEYGGKRYVVENVREALVGGGGEFYSDDAQKRVIWAVEED
SKGVVPVLDTVVGFRGVQGLSMQGLSVAHASDGGDLRYSAYFSPTSAISI
QNSSFVSLSGVTVRNVGGSGIAVLSNTHHLNITHCLVLDTGGDGIQAAAP
DATHLLISDTIVNDTAKIFLNQPAGIRVKGAEDIRIQHNQVAFSPYGGIL
VGWQ
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mRNA from alignment at M-pyrifera_M_contig88414:59..820-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88414.20535.1 ID=mRNA_M-pyrifera_M_contig88414.20535.1|Name=mRNA_M-pyrifera_M_contig88414.20535.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig88414:59..820- (Macrocystis pyrifera P11B4 male)
AACAACTGGGGCTTCGTTTTCGGCAAAGGGGACTTGAACGCCTCTTCGTC
CCAGCCCGAGGCGATGGACGTGCTGCAGTTCCAGGCGTGGGTGGGCAACT
GGGCGCCGGTGCGTGCCATAGAGCCGCAAAACGACACGCTCCTGTTTGCC
GCGCCCATGCTGGAGCCTGTGGGGCAGTTCGAGGAGTATGGGGGCAAGCG
GTACGTGGTGGAGAACGTGCGGGAGGCGCTGGTCGGGGGTGGAGGGGAAT
TTTACAGCGACGATGCCCAGAAAAGAGTGATTTGGGCCGTAGAAGAAGAC
TCAAAGGGAGTTGTGCCAGTTTTGGATACGGTGGTGGGGTTTCGAGGCGT
GCAAGGGTTGTCGATGCAAGGTCTGAGCGTGGCGCACGCGAGTGATGGGG
GAGACTTGCGCTACTCTGCCTACTTCTCTCCCACCAGCGCCATTTCCATC
CAAAACTCCTCGTTTGTGTCTCTCTCCGGAGTCACTGTTCGGAACGTAGG
GGGGAGCGGCATCGCCGTCCTCTCCAACACCCACCACCTGAACATCACCC
ACTGCCTCGTGCTTGACACGGGCGGCGATGGCATCCAGGCAGCCGCCCCG
GACGCCACCCACCTCCTCATCTCCGACACCATCGTGAACGATACGGCCAA
GATCTTCCTCAACCAACCCGCGGGGATCCGCGTCAAGGGAGCGGAGGACA
TTCGAATCCAACACAACCAAGTCGCCTTCTCCCCCTACGGAGGCATCCTC
GTCGGCTGGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88414:59..820-

>mRNA_M-pyrifera_M_contig88414.20535.1 ID=mRNA_M-pyrifera_M_contig88414.20535.1|Name=mRNA_M-pyrifera_M_contig88414.20535.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig88414:59..820- (Macrocystis pyrifera P11B4 male)
AACAACTGGGGCTTCGTTTTCGGCAAAGGGGACTTGAACGCCTCTTCGTC
CCAGCCCGAGGCGATGGACGTGCTGCAGTTCCAGGCGTGGGTGGGCAACT
GGGCGCCGGTGCGTGCCATAGAGCCGCAAAACGACACGCTCCTGTTTGCC
GCGCCCATGCTGGAGCCTGTGGGGCAGTTCGAGGAGTATGGGGGCAAGCG
GTACGTGGTGGAGAACGTGCGGGAGGCGCTGGTCGGGGGTGGAGGGGAAT
TTTACAGCGACGATGCCCAGAAAAGAGTGATTTGGGCCGTAGAAGAAGAC
TCAAAGGGAGTTGTGCCAGTTTTGGATACGGTGGTGGGGTTTCGAGGCGT
GCAAGGGTTGTCGATGCAAGGTCTGAGCGTGGCGCACGCGAGTGATGGGG
GAGACTTGCGCTACTCTGCCTACTTCTCTCCCACCAGCGCCATTTCCATC
CAAAACTCCTCGTTTGTGTCTCTCTCCGGAGTCACTGTTCGGAACGTAGG
GGGGAGCGGCATCGCCGTCCTCTCCAACACCCACCACCTGAACATCACCC
ACTGCCTCGTGCTTGACACGGGCGGCGATGGCATCCAGGCAGCCGCCCCG
GACGCCACCCACCTCCTCATCTCCGACACCATCGTGAACGATACGGCCAA
GATCTTCCTCAACCAACCCGCGGGGATCCGCGTCAAGGGAGCGGAGGACA
TTCGAATCCAACACAACCAAGTCGCCTTCTCCCCCTACGGAGGCATCCTC
GTCGGCTGGCAGAACAACTGGGGCTTCGTTTTCGGCAAAGGGGACTTGAA
CGCCTCTTCGTCCCAGCCCGAGGCGATGGACGTGCTGCAGTTCCAGGCGT
GGGTGGGCAACTGGGCGCCGGTGCGTGCCATAGAGCCGCAAAACGACACG
CTCCTGTTTGCCGCGCCCATGCTGGAGCCTGTGGGGCAGTTCGAGGAGTA
TGGGGGCAAGCGGTACGTGGTGGAGAACGTGCGGGAGGCGCTGGTCGGGG
GTGGAGGGGAATTTTACAGCGACGATGCCCAGAAAAGAGTGATTTGGGCC
GTAGAAGAAGACTCAAAGGGAGTTGTGCCAGTTTTGGATACGGTGGTGGG
GTTTCGAGGCGTGCAAGGGTTGTCGATGCAAGGTCTGAGCGTGGCGCACG
CGAGTGATGGGGGAGACTTGCGCTACTCTGCCTACTTCTCTCCCACCAGC
GCCATTTCCATCCAAAACTCCTCGTTTGTGTCTCTCTCCGGAGTCACTGT
TCGGAACGTAGGGGGGAGCGGCATCGCCGTCCTCTCCAACACCCACCACC
TGAACATCACCCACTGCCTCGTGCTTGACACGGGCGGCGATGGCATCCAG
GCAGCCGCCCCGGACGCCACCCACCTCCTCATCTCCGACACCATCGTGAA
CGATACGGCCAAGATCTTCCTCAACCAACCCGCGGGGATCCGCGTCAAGG
GAGCGGAGGACATTCGAATCCAACACAACCAAGTCGCCTTCTCCCCCTAC
GGAGGCATCCTCGTCGGCTGGCAG
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